RNA–Protein interactions for RNA: ENST00000485140.1

VPS50-217, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 558 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-217ENST00000485140 TSPYL2Q9H2G4 693 aaPredicted RBP11.26□□□□□ -0.61
VPS50-217ENST00000485140 NUBP1P53384 320 aa11.23□□□□□ -0.61
VPS50-217ENST00000485140 DCBLD2Q96PD2 775 aa11.23□□□□□ -0.61
VPS50-217ENST00000485140 SGIP1Q9BQI5 828 aa11.23□□□□□ -0.61
VPS50-217ENST00000485140 CCDC61Q9Y6R9 512 aa11.23□□□□□ -0.61
VPS50-217ENST00000485140 GSE1Q14687 1217 aa11.22□□□□□ -0.61
VPS50-217ENST00000485140 RASEFQ8IZ41 740 aa11.21□□□□□ -0.61
VPS50-217ENST00000485140 PHF12Q96QT6 1004 aa11.19□□□□□ -0.62
VPS50-217ENST00000485140 SPOCK2Q92563 424 aa11.18□□□□□ -0.62
VPS50-217ENST00000485140 DCAF8Q5TAQ9 597 aa11.15□□□□□ -0.62
VPS50-217ENST00000485140 KIF12Q96FN5 646 aa11.15□□□□□ -0.62
VPS50-217ENST00000485140 GALR2O43603 387 aaPredicted RBP11.12□□□□□ -0.63
VPS50-217ENST00000485140 TRIM41Q8WV44 630 aa11.11□□□□□ -0.63
VPS50-217ENST00000485140 IFNLR1Q8IU57 520 aaPredicted RBP11.09□□□□□ -0.63
VPS50-217ENST00000485140 OTUD5Q96G74 571 aa11.09□□□□□ -0.63
VPS50-217ENST00000485140 MS4A3Q96HJ5 214 aa11.09□□□□□ -0.63
VPS50-217ENST00000485140 POTEB2H3BUK9 544 aa11.08□□□□□ -0.64
VPS50-217ENST00000485140 CHRM1P11229 460 aaPredicted RBP11.06□□□□□ -0.64
VPS50-217ENST00000485140 TIE1P35590 1138 aa11.06□□□□□ -0.64
VPS50-217ENST00000485140 PCDHB13Q9Y5F0 798 aa11.06□□□□□ -0.64
VPS50-217ENST00000485140 MAP3K13O43283 966 aa11.05□□□□□ -0.64
VPS50-217ENST00000485140 ASTLQ6HA08 431 aaPredicted RBP11.03□□□□□ -0.64
VPS50-217ENST00000485140 ZNF467Q7Z7K2 595 aaPredicted RBP11.03□□□□□ -0.64
VPS50-217ENST00000485140 SLC39A7Q92504 469 aa11□□□□□ -0.65
VPS50-217ENST00000485140 POTEMA6NI47 508 aa10.98□□□□□ -0.65
VPS50-217ENST00000485140 C7P10643 843 aa10.98□□□□□ -0.65
VPS50-217ENST00000485140 CIZ1Q9ULV3 898 aaPredicted RBP10.98□□□□□ -0.65
VPS50-217ENST00000485140 ATMINO43313 823 aaPredicted RBP10.97□□□□□ -0.65
VPS50-217ENST00000485140 PYGBP11216 843 aa10.96□□□□□ -0.65
VPS50-217ENST00000485140 IER5LQ5T953 404 aa10.94□□□□□ -0.66
VPS50-217ENST00000485140 IFNL1Q8IU54 200 aa10.94□□□□□ -0.66
VPS50-217ENST00000485140 POTEGQ6S5H5 508 aa10.93□□□□□ -0.66
VPS50-217ENST00000485140 BMP2KQ9NSY1 1161 aaPredicted RBP10.92□□□□□ -0.66
VPS50-217ENST00000485140 PELP1Q8IZL8 1130 aaKnown RBP10.91□□□□□ -0.66
VPS50-217ENST00000485140 TAOK2Q9UL54 1235 aa10.91□□□□□ -0.66
VPS50-217ENST00000485140 TTLL13PA6NNM8 815 aa10.9□□□□□ -0.66
VPS50-217ENST00000485140 TMEM106CQ9BVX2 250 aa10.88□□□□□ -0.67
VPS50-217ENST00000485140 METRNQ9UJH8 293 aa10.88□□□□□ -0.67
VPS50-217ENST00000485140 ATN1P54259 1190 aaPredicted RBP10.87□□□□□ -0.67
VPS50-217ENST00000485140 MAMSTRQ6ZN01 415 aa10.85□□□□□ -0.67
VPS50-217ENST00000485140 POTEJP0CG39 1038 aa10.84□□□□□ -0.67
VPS50-217ENST00000485140 GOLGA2Q08379 1002 aa10.84□□□□□ -0.67
VPS50-217ENST00000485140 PDAP1Q13442 181 aaKnown RBP10.84□□□□□ -0.67
VPS50-217ENST00000485140 TRIM35Q9UPQ4 493 aa10.83□□□□□ -0.68
VPS50-217ENST00000485140 SEC24BO95487 1268 aa10.82□□□□□ -0.68
VPS50-217ENST00000485140 PCDHB8Q9UN66 801 aa10.82□□□□□ -0.68
VPS50-217ENST00000485140 TRPC6Q9Y210 931 aa10.8□□□□□ -0.68
VPS50-217ENST00000485140 PSEN1P49768 467 aa10.79□□□□□ -0.68
VPS50-217ENST00000485140 LCE2DQ5TA82 110 aaPredicted RBP10.79□□□□□ -0.68
VPS50-217ENST00000485140 RIOK3O14730 519 aaKnown RBP10.76□□□□□ -0.69
VPS50-217ENST00000485140 MKRN3Q13064 507 aaKnown RBP10.76□□□□□ -0.69
VPS50-217ENST00000485140 PLCG2P16885 1265 aa10.75□□□□□ -0.69
VPS50-217ENST00000485140 SCUBE2Q9NQ36 999 aa10.75□□□□□ -0.69
VPS50-217ENST00000485140 VGFO15240 615 aaPredicted RBP10.74□□□□□ -0.69
VPS50-217ENST00000485140 OCEL1Q9H607 264 aa10.72□□□□□ -0.69
VPS50-217ENST00000485140 ECM2O94769 699 aaPredicted RBP10.69□□□□□ -0.7
VPS50-217ENST00000485140 IRX5P78411 483 aaPredicted RBP10.68□□□□□ -0.7
VPS50-217ENST00000485140 PCDH10Q9P2E7 1040 aa10.68□□□□□ -0.7
VPS50-217ENST00000485140 L3MBTL3Q96JM7 780 aaPredicted RBP10.65□□□□□ -0.7
VPS50-217ENST00000485140 FAM163AQ96GL9 167 aaPredicted RBP10.64□□□□□ -0.71
VPS50-217ENST00000485140 CABP2Q9NPB3 220 aa10.62□□□□□ -0.71
VPS50-217ENST00000485140 COLQQ9Y215 455 aaPredicted RBP10.62□□□□□ -0.71
VPS50-217ENST00000485140 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.61□□□□□ -0.71
VPS50-217ENST00000485140 G3V3G9 751 aa10.6□□□□□ -0.71
VPS50-217ENST00000485140 SOX12O15370 315 aa10.6□□□□□ -0.71
VPS50-217ENST00000485140 POTEFA5A3E0 1075 aa10.59□□□□□ -0.71
VPS50-217ENST00000485140 PKD2Q13563 968 aa10.59□□□□□ -0.71
VPS50-217ENST00000485140 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.58□□□□□ -0.72
VPS50-217ENST00000485140 RNF25Q96BH1 459 aaPredicted RBP10.58□□□□□ -0.72
VPS50-217ENST00000485140 ZFP91Q96JP5 570 aaPredicted RBP10.58□□□□□ -0.72
VPS50-217ENST00000485140 ILDR1Q86SU0 546 aaPredicted RBP10.57□□□□□ -0.72
VPS50-217ENST00000485140 PDCD7Q8N8D1 485 aaKnown RBP10.54□□□□□ -0.72
VPS50-217ENST00000485140 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.54□□□□□ -0.72
VPS50-217ENST00000485140 C3orf67Q6ZVT6 689 aa10.53□□□□□ -0.72
VPS50-217ENST00000485140 STK25O00506 426 aa10.52□□□□□ -0.73
VPS50-217ENST00000485140 BCL11BQ9C0K0 894 aaPredicted RBP10.51□□□□□ -0.73
VPS50-217ENST00000485140 EFCAB3Q8N7B9 438 aa10.5□□□□□ -0.73
VPS50-217ENST00000485140 STK24Q9Y6E0 443 aa10.5□□□□□ -0.73
VPS50-217ENST00000485140 SNPHO15079 494 aa10.49□□□□□ -0.73
VPS50-217ENST00000485140 NLRP6P59044 892 aa10.49□□□□□ -0.73
VPS50-217ENST00000485140 RGL2O15211 777 aa10.48□□□□□ -0.73
VPS50-217ENST00000485140 SLAIN1Q8ND83 568 aa10.46□□□□□ -0.73
VPS50-217ENST00000485140 RYDENQ9NUL5 291 aaKnown RBP10.46□□□□□ -0.73
VPS50-217ENST00000485140 BOLA1Q9Y3E2 137 aa10.46□□□□□ -0.73
VPS50-217ENST00000485140 CDAN1Q8IWY9 1227 aa10.43□□□□□ -0.74
VPS50-217ENST00000485140 HS6ST3Q8IZP7 471 aa10.43□□□□□ -0.74
VPS50-217ENST00000485140 AMER1Q5JTC6 1135 aaPredicted RBP10.39□□□□□ -0.75
VPS50-217ENST00000485140 TMEM121BQ9BXQ6 578 aaPredicted RBP10.39□□□□□ -0.75
VPS50-217ENST00000485140 DNAJC5Q9H3Z4 198 aa10.37□□□□□ -0.75
VPS50-217ENST00000485140 PHF8Q9UPP1 1060 aa10.36□□□□□ -0.75
VPS50-217ENST00000485140 FBXO22Q8NEZ5 403 aa10.34□□□□□ -0.75
VPS50-217ENST00000485140 DPY19L2Q6NUT2 758 aa10.33□□□□□ -0.76
VPS50-217ENST00000485140 MICALL2Q8IY33 904 aa10.33□□□□□ -0.76
VPS50-217ENST00000485140 CHGAP10645 457 aaKnown RBP10.32□□□□□ -0.76
VPS50-217ENST00000485140 MFRPQ9BY79 579 aa10.32□□□□□ -0.76
VPS50-217ENST00000485140 MS4A4AQ96JQ5 239 aa10.3□□□□□ -0.76
VPS50-217ENST00000485140 RIMBP2O15034 1052 aa10.29□□□□□ -0.76
VPS50-217ENST00000485140 ST18O60284 1047 aa10.29□□□□□ -0.76
VPS50-217ENST00000485140 DOK7Q18PE1 504 aa10.28□□□□□ -0.76
VPS50-217ENST00000485140 DCAF8L2P0C7V8 631 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms