RNA–Protein interactions for RNA: ENST00000484799.1

SMC4-215, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 478 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-215ENST00000484799 PHF12Q96QT6 1004 aa13.12□□□□□ -0.31
SMC4-215ENST00000484799 DCBLD2Q96PD2 775 aa13.11□□□□□ -0.31
SMC4-215ENST00000484799 NUBP1P53384 320 aa13.08□□□□□ -0.32
SMC4-215ENST00000484799 SPOCK2Q92563 424 aa13.05□□□□□ -0.32
SMC4-215ENST00000484799 CCDC61Q9Y6R9 512 aa13.03□□□□□ -0.32
SMC4-215ENST00000484799 GSE1Q14687 1217 aa13.02□□□□□ -0.33
SMC4-215ENST00000484799 IFNLR1Q8IU57 520 aaPredicted RBP13.02□□□□□ -0.33
SMC4-215ENST00000484799 GALR2O43603 387 aaPredicted RBP13□□□□□ -0.33
SMC4-215ENST00000484799 CIZ1Q9ULV3 898 aaPredicted RBP12.98□□□□□ -0.33
SMC4-215ENST00000484799 KIF12Q96FN5 646 aa12.97□□□□□ -0.33
SMC4-215ENST00000484799 MAP3K13O43283 966 aa12.94□□□□□ -0.34
SMC4-215ENST00000484799 MS4A3Q96HJ5 214 aa12.94□□□□□ -0.34
SMC4-215ENST00000484799 PCDHB13Q9Y5F0 798 aa12.93□□□□□ -0.34
SMC4-215ENST00000484799 PYGBP11216 843 aa12.91□□□□□ -0.34
SMC4-215ENST00000484799 SGIP1Q9BQI5 828 aa12.89□□□□□ -0.35
SMC4-215ENST00000484799 POTEIP0CG38 1075 aa12.81□□□□□ -0.36
SMC4-215ENST00000484799 IFNL1Q8IU54 200 aa12.78□□□□□ -0.36
SMC4-215ENST00000484799 TIE1P35590 1138 aa12.77□□□□□ -0.37
SMC4-215ENST00000484799 ZNF467Q7Z7K2 595 aaPredicted RBP12.77□□□□□ -0.37
SMC4-215ENST00000484799 TRIM41Q8WV44 630 aa12.77□□□□□ -0.37
SMC4-215ENST00000484799 ATMINO43313 823 aaPredicted RBP12.76□□□□□ -0.37
SMC4-215ENST00000484799 CHRM1P11229 460 aaPredicted RBP12.76□□□□□ -0.37
SMC4-215ENST00000484799 ASTLQ6HA08 431 aaPredicted RBP12.74□□□□□ -0.37
SMC4-215ENST00000484799 SLC39A7Q92504 469 aa12.73□□□□□ -0.37
SMC4-215ENST00000484799 PCDHB8Q9UN66 801 aa12.73□□□□□ -0.37
SMC4-215ENST00000484799 TMEM106CQ9BVX2 250 aa12.72□□□□□ -0.37
SMC4-215ENST00000484799 BMP2KQ9NSY1 1161 aaPredicted RBP12.72□□□□□ -0.37
SMC4-215ENST00000484799 C7P10643 843 aa12.71□□□□□ -0.37
SMC4-215ENST00000484799 ATN1P54259 1190 aaPredicted RBP12.7□□□□□ -0.38
SMC4-215ENST00000484799 LHX8Q68G74 356 aa12.7□□□□□ -0.38
SMC4-215ENST00000484799 TRPC6Q9Y210 931 aa12.7□□□□□ -0.38
SMC4-215ENST00000484799 TTLL13PA6NNM8 815 aa12.69□□□□□ -0.38
SMC4-215ENST00000484799 GOLGA2Q08379 1002 aa12.68□□□□□ -0.38
SMC4-215ENST00000484799 SEC24BO95487 1268 aa12.67□□□□□ -0.38
SMC4-215ENST00000484799 PELP1Q8IZL8 1130 aaKnown RBP12.66□□□□□ -0.38
SMC4-215ENST00000484799 METRNQ9UJH8 293 aa12.66□□□□□ -0.38
SMC4-215ENST00000484799 TRIM35Q9UPQ4 493 aa12.64□□□□□ -0.39
SMC4-215ENST00000484799 PSEN1P49768 467 aa12.61□□□□□ -0.39
SMC4-215ENST00000484799 PDAP1Q13442 181 aaKnown RBP12.6□□□□□ -0.39
SMC4-215ENST00000484799 ECM2O94769 699 aaPredicted RBP12.59□□□□□ -0.39
SMC4-215ENST00000484799 TAOK2Q9UL54 1235 aa12.59□□□□□ -0.39
SMC4-215ENST00000484799 MKRN3Q13064 507 aaKnown RBP12.57□□□□□ -0.4
SMC4-215ENST00000484799 IER5LQ5T953 404 aa12.56□□□□□ -0.4
SMC4-215ENST00000484799 RIOK3O14730 519 aaKnown RBP12.53□□□□□ -0.4
SMC4-215ENST00000484799 PLCG2P16885 1265 aa12.53□□□□□ -0.4
SMC4-215ENST00000484799 MAMSTRQ6ZN01 415 aa12.5□□□□□ -0.41
SMC4-215ENST00000484799 VGFO15240 615 aaPredicted RBP12.48□□□□□ -0.41
SMC4-215ENST00000484799 CABP2Q9NPB3 220 aa12.47□□□□□ -0.41
SMC4-215ENST00000484799 OCEL1Q9H607 264 aa12.46□□□□□ -0.41
SMC4-215ENST00000484799 SCUBE2Q9NQ36 999 aa12.45□□□□□ -0.42
SMC4-215ENST00000484799 COLQQ9Y215 455 aaPredicted RBP12.43□□□□□ -0.42
SMC4-215ENST00000484799 POTEB2H3BUK9 544 aa12.42□□□□□ -0.42
SMC4-215ENST00000484799 PKD2Q13563 968 aa12.42□□□□□ -0.42
SMC4-215ENST00000484799 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.42□□□□□ -0.423e-7■■□□□ 13.3
SMC4-215ENST00000484799 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.39□□□□□ -0.43
SMC4-215ENST00000484799 G3V3G9 751 aa12.39□□□□□ -0.43
SMC4-215ENST00000484799 ZFP91Q96JP5 570 aaPredicted RBP12.39□□□□□ -0.43
SMC4-215ENST00000484799 IRX5P78411 483 aaPredicted RBP12.38□□□□□ -0.43
SMC4-215ENST00000484799 RNF25Q96BH1 459 aaPredicted RBP12.37□□□□□ -0.43
SMC4-215ENST00000484799 POTEFA5A3E0 1075 aa12.36□□□□□ -0.43
SMC4-215ENST00000484799 L3MBTL3Q96JM7 780 aaPredicted RBP12.35□□□□□ -0.43
SMC4-215ENST00000484799 STK24Q9Y6E0 443 aa12.35□□□□□ -0.43
SMC4-215ENST00000484799 STK25O00506 426 aa12.34□□□□□ -0.43
SMC4-215ENST00000484799 RGL2O15211 777 aa12.34□□□□□ -0.43
SMC4-215ENST00000484799 OTUD5Q96G74 571 aa12.34□□□□□ -0.43
SMC4-215ENST00000484799 EFCAB3Q8N7B9 438 aa12.33□□□□□ -0.44
SMC4-215ENST00000484799 BCL11BQ9C0K0 894 aaPredicted RBP12.32□□□□□ -0.44
SMC4-215ENST00000484799 SOX12O15370 315 aa12.29□□□□□ -0.44
SMC4-215ENST00000484799 DCAF8L2P0C7V8 631 aa12.27□□□□□ -0.45
SMC4-215ENST00000484799 POTEJP0CG39 1038 aa12.27□□□□□ -0.45
SMC4-215ENST00000484799 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.27□□□□□ -0.45
SMC4-215ENST00000484799 C3orf67Q6ZVT6 689 aa12.26□□□□□ -0.45
SMC4-215ENST00000484799 SLAIN1Q8ND83 568 aa12.24□□□□□ -0.45
SMC4-215ENST00000484799 PDCD7Q8N8D1 485 aaKnown RBP12.23□□□□□ -0.45
SMC4-215ENST00000484799 NLRP6P59044 892 aa12.21□□□□□ -0.45
SMC4-215ENST00000484799 BOLA1Q9Y3E2 137 aa12.2□□□□□ -0.46
SMC4-215ENST00000484799 CHGAP10645 457 aaKnown RBP12.19□□□□□ -0.46
SMC4-215ENST00000484799 DPY19L2Q6NUT2 758 aa12.19□□□□□ -0.46
SMC4-215ENST00000484799 PHF8Q9UPP1 1060 aa12.17□□□□□ -0.46
SMC4-215ENST00000484799 FAM163AQ96GL9 167 aaPredicted RBP12.15□□□□□ -0.46
SMC4-215ENST00000484799 ILDR1Q86SU0 546 aaPredicted RBP12.14□□□□□ -0.47
SMC4-215ENST00000484799 SNPHO15079 494 aa12.11□□□□□ -0.47
SMC4-215ENST00000484799 AMER1Q5JTC6 1135 aaPredicted RBP12.11□□□□□ -0.47
SMC4-215ENST00000484799 HS6ST3Q8IZP7 471 aa12.09□□□□□ -0.47
SMC4-215ENST00000484799 MFRPQ9BY79 579 aa12.05□□□□□ -0.48
SMC4-215ENST00000484799 MICALL2Q8IY33 904 aa12.03□□□□□ -0.48
SMC4-215ENST00000484799 MS4A4AQ96JQ5 239 aa12.03□□□□□ -0.48
SMC4-215ENST00000484799 RYDENQ9NUL5 291 aaKnown RBP12.03□□□□□ -0.48
SMC4-215ENST00000484799 FBXO22Q8NEZ5 403 aa12.02□□□□□ -0.49
SMC4-215ENST00000484799 TMEM121BQ9BXQ6 578 aaPredicted RBP12□□□□□ -0.49
SMC4-215ENST00000484799 ZNF710Q8N1W2 664 aa11.94□□□□□ -0.5
SMC4-215ENST00000484799 RTN4Q9NQC3 1192 aaKnown RBP11.94□□□□□ -0.5
SMC4-215ENST00000484799 POTEMA6NI47 508 aa11.92□□□□□ -0.5
SMC4-215ENST00000484799 RIMBP2O15034 1052 aa11.91□□□□□ -0.5
SMC4-215ENST00000484799 POTEGQ6S5H5 508 aa11.91□□□□□ -0.5
SMC4-215ENST00000484799 DOK7Q18PE1 504 aa11.9□□□□□ -0.5
SMC4-215ENST00000484799 TMC2Q8TDI7 906 aa11.9□□□□□ -0.5
SMC4-215ENST00000484799 ST18O60284 1047 aa11.89□□□□□ -0.51
SMC4-215ENST00000484799 DNAJC5Q9H3Z4 198 aa11.88□□□□□ -0.51
SMC4-215ENST00000484799 PPP1R37O75864 691 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms