RNA–Protein interactions for RNA: ENST00000484581.6

VPS13A-211, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2 BASIC

Gene VPS13A, Length 1,155 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-211ENST00000484581 POTEMA6NI47 508 aa12.23□□□□□ -0.45
VPS13A-211ENST00000484581 MS4A3Q96HJ5 214 aa12.22□□□□□ -0.45
VPS13A-211ENST00000484581 ASTLQ6HA08 431 aaPredicted RBP12.21□□□□□ -0.45
VPS13A-211ENST00000484581 METRNQ9UJH8 293 aa12.2□□□□□ -0.46
VPS13A-211ENST00000484581 ATMINO43313 823 aaPredicted RBP12.18□□□□□ -0.46
VPS13A-211ENST00000484581 POTEGQ6S5H5 508 aa12.18□□□□□ -0.46
VPS13A-211ENST00000484581 PLCD3Q8N3E9 789 aa12.17□□□□□ -0.46
VPS13A-211ENST00000484581 SLC39A7Q92504 469 aa12.16□□□□□ -0.46
VPS13A-211ENST00000484581 C7P10643 843 aa12.15□□□□□ -0.46
VPS13A-211ENST00000484581 POTEJP0CG39 1038 aa12.14□□□□□ -0.47
VPS13A-211ENST00000484581 TSPYL2Q9H2G4 693 aaPredicted RBP12.14□□□□□ -0.47
VPS13A-211ENST00000484581 CCDC61Q9Y6R9 512 aa12.08□□□□□ -0.48
VPS13A-211ENST00000484581 MAMSTRQ6ZN01 415 aa12.07□□□□□ -0.48
VPS13A-211ENST00000484581 ZBTB47Q9UFB7 747 aaPredicted RBP12.07□□□□□ -0.48
VPS13A-211ENST00000484581 ATN1P54259 1190 aaPredicted RBP12.06□□□□□ -0.48
VPS13A-211ENST00000484581 KIF12Q96FN5 646 aa12.03□□□□□ -0.48
VPS13A-211ENST00000484581 PCDH10Q9P2E7 1040 aa12.03□□□□□ -0.48
VPS13A-211ENST00000484581 FBXO3Q9UK99 471 aa12.03□□□□□ -0.48
VPS13A-211ENST00000484581 LCE2DQ5TA82 110 aaPredicted RBP12□□□□□ -0.49
VPS13A-211ENST00000484581 RASEFQ8IZ41 740 aa12□□□□□ -0.49
VPS13A-211ENST00000484581 SCUBE2Q9NQ36 999 aa11.99□□□□□ -0.49
VPS13A-211ENST00000484581 BMP2KQ9NSY1 1161 aaPredicted RBP11.98□□□□□ -0.49
VPS13A-211ENST00000484581 POTEFA5A3E0 1075 aa11.97□□□□□ -0.49
VPS13A-211ENST00000484581 TRPC6Q9Y210 931 aa11.97□□□□□ -0.49
VPS13A-211ENST00000484581 FAM163AQ96GL9 167 aaPredicted RBP11.95□□□□□ -0.5
VPS13A-211ENST00000484581 MAP3K13O43283 966 aa11.93□□□□□ -0.5
VPS13A-211ENST00000484581 TIE1P35590 1138 aa11.92□□□□□ -0.5
VPS13A-211ENST00000484581 NUBP1P53384 320 aa11.91□□□□□ -0.5
VPS13A-211ENST00000484581 FAM212AQ96EL1 285 aa11.88□□□□□ -0.51
VPS13A-211ENST00000484581 TTLL13PA6NNM8 815 aa11.85□□□□□ -0.51
VPS13A-211ENST00000484581 COLQQ9Y215 455 aaPredicted RBP11.85□□□□□ -0.51
VPS13A-211ENST00000484581 KLHL34Q8N239 644 aa11.84□□□□□ -0.51
VPS13A-211ENST00000484581 SEC24BO95487 1268 aa11.82□□□□□ -0.52
VPS13A-211ENST00000484581 VASPP50552 380 aaPredicted RBP11.82□□□□□ -0.52
VPS13A-211ENST00000484581 DCAF8Q5TAQ9 597 aa11.82□□□□□ -0.52
VPS13A-211ENST00000484581 SGIP1Q9BQI5 828 aa11.81□□□□□ -0.52
VPS13A-211ENST00000484581 PCDHB13Q9Y5F0 798 aa11.81□□□□□ -0.52
VPS13A-211ENST00000484581 TRIM35Q9UPQ4 493 aa11.78□□□□□ -0.52
VPS13A-211ENST00000484581 IER5LQ5T953 404 aa11.77□□□□□ -0.53
VPS13A-211ENST00000484581 IFNL1Q8IU54 200 aa11.71□□□□□ -0.53
VPS13A-211ENST00000484581 PYGBP11216 843 aa11.7□□□□□ -0.54
VPS13A-211ENST00000484581 CDAN1Q8IWY9 1227 aa11.7□□□□□ -0.54
VPS13A-211ENST00000484581 GSE1Q14687 1217 aa11.69□□□□□ -0.54
VPS13A-211ENST00000484581 SLAIN1Q8ND83 568 aa11.67□□□□□ -0.54
VPS13A-211ENST00000484581 TMEM106CQ9BVX2 250 aa11.66□□□□□ -0.54
VPS13A-211ENST00000484581 ST18O60284 1047 aa11.64□□□□□ -0.55
VPS13A-211ENST00000484581 PLCG2P16885 1265 aa11.62□□□□□ -0.55
VPS13A-211ENST00000484581 SPOCK2Q92563 424 aa11.61□□□□□ -0.55
VPS13A-211ENST00000484581 PCDHB8Q9UN66 801 aa11.6□□□□□ -0.55
VPS13A-211ENST00000484581 IRX5P78411 483 aaPredicted RBP11.59□□□□□ -0.55
VPS13A-211ENST00000484581 IFNLR1Q8IU57 520 aaPredicted RBP11.59□□□□□ -0.55
VPS13A-211ENST00000484581 CIZ1Q9ULV3 898 aaPredicted RBP11.56□□□□□ -0.56
VPS13A-211ENST00000484581 CHRM1P11229 460 aaPredicted RBP11.55□□□□□ -0.56
VPS13A-211ENST00000484581 ZNF467Q7Z7K2 595 aaPredicted RBP11.55□□□□□ -0.56
VPS13A-211ENST00000484581 OCEL1Q9H607 264 aa11.51□□□□□ -0.57
VPS13A-211ENST00000484581 TMEM121BQ9BXQ6 578 aaPredicted RBP11.48□□□□□ -0.57
VPS13A-211ENST00000484581 GOLGA2Q08379 1002 aa11.47□□□□□ -0.57
VPS13A-211ENST00000484581 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.45□□□□□ -0.58
VPS13A-211ENST00000484581 SNPHO15079 494 aa11.44□□□□□ -0.58
VPS13A-211ENST00000484581 PSEN1P49768 467 aa11.44□□□□□ -0.58
VPS13A-211ENST00000484581 MMRN1Q13201 1228 aa11.44□□□□□ -0.58
VPS13A-211ENST00000484581 MKRN3Q13064 507 aaKnown RBP11.43□□□□□ -0.58
VPS13A-211ENST00000484581 SPNS2Q8IVW8 549 aa11.43□□□□□ -0.58
VPS13A-211ENST00000484581 MARVELD3Q96A59 401 aa11.41□□□□□ -0.58
VPS13A-211ENST00000484581 PDAP1Q13442 181 aaKnown RBP11.4□□□□□ -0.58
VPS13A-211ENST00000484581 TRIM41Q8WV44 630 aa11.38□□□□□ -0.59
VPS13A-211ENST00000484581 PDCD7Q8N8D1 485 aaKnown RBP11.37□□□□□ -0.59
VPS13A-211ENST00000484581 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.33□□□□□ -0.67e-7■■■■□ 23
VPS13A-211ENST00000484581 C3orf67Q6ZVT6 689 aa11.32□□□□□ -0.6
VPS13A-211ENST00000484581 L3MBTL3Q96JM7 780 aaPredicted RBP11.3□□□□□ -0.6
VPS13A-211ENST00000484581 CABP2Q9NPB3 220 aa11.3□□□□□ -0.6
VPS13A-211ENST00000484581 EMP3P54852 163 aa11.29□□□□□ -0.6
VPS13A-211ENST00000484581 POTEB3A0JP26 581 aa11.23□□□□□ -0.61
VPS13A-211ENST00000484581 POTEBQ6S5H4 581 aa11.23□□□□□ -0.61
VPS13A-211ENST00000484581 KRTAP3-3Q9BYR6 98 aa11.23□□□□□ -0.61
VPS13A-211ENST00000484581 KRTAP3-2Q9BYR7 98 aa11.23□□□□□ -0.61
VPS13A-211ENST00000484581 G3V3G9 751 aa11.22□□□□□ -0.61
VPS13A-211ENST00000484581 HS3ST6Q96QI5 342 aa11.22□□□□□ -0.61
VPS13A-211ENST00000484581 RIOK3O14730 519 aaKnown RBP11.21□□□□□ -0.61
VPS13A-211ENST00000484581 FAM205CA6NFA0 338 aa11.2□□□□□ -0.62
VPS13A-211ENST00000484581 ILDR1Q86SU0 546 aaPredicted RBP11.19□□□□□ -0.62
VPS13A-211ENST00000484581 AMER1Q5JTC6 1135 aaPredicted RBP11.18□□□□□ -0.62
VPS13A-211ENST00000484581 DPY19L2Q6NUT2 758 aa11.18□□□□□ -0.62
VPS13A-211ENST00000484581 VGFO15240 615 aaPredicted RBP11.16□□□□□ -0.62
VPS13A-211ENST00000484581 EFCAB3Q8N7B9 438 aa11.16□□□□□ -0.62
VPS13A-211ENST00000484581 BOLA1Q9Y3E2 137 aa11.15□□□□□ -0.62
VPS13A-211ENST00000484581 RNF25Q96BH1 459 aaPredicted RBP11.13□□□□□ -0.63
VPS13A-211ENST00000484581 RTN4Q9NQC3 1192 aaKnown RBP11.13□□□□□ -0.63
VPS13A-211ENST00000484581 TAOK2Q9UL54 1235 aa11.13□□□□□ -0.63
VPS13A-211ENST00000484581 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.12□□□□□ -0.63
VPS13A-211ENST00000484581 SLC24A1O60721 1099 aa11.12□□□□□ -0.63
VPS13A-211ENST00000484581 ZFP91Q96JP5 570 aaPredicted RBP11.12□□□□□ -0.63
VPS13A-211ENST00000484581 HOXB3P14651 431 aaPredicted RBP11.1□□□□□ -0.63
VPS13A-211ENST00000484581 SOX12O15370 315 aa11.09□□□□□ -0.63
VPS13A-211ENST00000484581 ECM2O94769 699 aaPredicted RBP11.07□□□□□ -0.64
VPS13A-211ENST00000484581 HOXB1P14653 301 aaPredicted RBP11.04□□□□□ -0.64
VPS13A-211ENST00000484581 ZNF710Q8N1W2 664 aa11.03□□□□□ -0.64
VPS13A-211ENST00000484581 BCL11BQ9C0K0 894 aaPredicted RBP11.02□□□□□ -0.65
VPS13A-211ENST00000484581 PHF8Q9UPP1 1060 aa11.01□□□□□ -0.65
VPS13A-211ENST00000484581 STK24Q9Y6E0 443 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms