RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 TSPYL2Q9H2G4 693 aaPredicted RBP16.7■□□□□ 0.26
USP40-213ENST00000483216 TRIM41Q8WV44 630 aa16.66■□□□□ 0.26
USP40-213ENST00000483216 HAX1O00165 279 aa16.64■□□□□ 0.25
USP40-213ENST00000483216 CCDC61Q9Y6R9 512 aa16.62■□□□□ 0.25
USP40-213ENST00000483216 ZRANB1Q9UGI0 708 aa16.61■□□□□ 0.25
USP40-213ENST00000483216 ECM2O94769 699 aaPredicted RBP16.59■□□□□ 0.25
USP40-213ENST00000483216 CHRM1P11229 460 aaPredicted RBP16.58■□□□□ 0.24
USP40-213ENST00000483216 PYGBP11216 843 aa16.52■□□□□ 0.24
USP40-213ENST00000483216 ZNF579Q8NAF0 562 aaKnown RBP16.52■□□□□ 0.24
USP40-213ENST00000483216 EVX2Q03828 476 aa16.51■□□□□ 0.23
USP40-213ENST00000483216 KIF12Q96FN5 646 aa16.45■□□□□ 0.22
USP40-213ENST00000483216 PHF12Q96QT6 1004 aa16.45■□□□□ 0.22
USP40-213ENST00000483216 RGL2O15211 777 aa16.43■□□□□ 0.22
USP40-213ENST00000483216 SGIP1Q9BQI5 828 aa16.42■□□□□ 0.22
USP40-213ENST00000483216 MAP3K13O43283 966 aa16.39■□□□□ 0.21
USP40-213ENST00000483216 RNF25Q96BH1 459 aaPredicted RBP16.39■□□□□ 0.21
USP40-213ENST00000483216 CLCN6P51797 869 aa16.37■□□□□ 0.21
USP40-213ENST00000483216 ZNF467Q7Z7K2 595 aaPredicted RBP16.36■□□□□ 0.21
USP40-213ENST00000483216 PCDHB13Q9Y5F0 798 aa16.36■□□□□ 0.21
USP40-213ENST00000483216 RIOK3O14730 519 aaKnown RBP16.35■□□□□ 0.21
USP40-213ENST00000483216 IFNL1Q8IU54 200 aa16.29■□□□□ 0.2
USP40-213ENST00000483216 TAOK2Q9UL54 1235 aa16.29■□□□□ 0.2
USP40-213ENST00000483216 PCDHB8Q9UN66 801 aa16.28■□□□□ 0.2
USP40-213ENST00000483216 MS4A3Q96HJ5 214 aa16.27■□□□□ 0.2
USP40-213ENST00000483216 VGFO15240 615 aaPredicted RBP16.26■□□□□ 0.19
USP40-213ENST00000483216 DCAF8L2P0C7V8 631 aa16.25■□□□□ 0.19
USP40-213ENST00000483216 SP7Q8TDD2 431 aaPredicted RBP16.22■□□□□ 0.19
USP40-213ENST00000483216 GALR2O43603 387 aaPredicted RBP16.21■□□□□ 0.19
USP40-213ENST00000483216 GABBR2O75899 941 aa16.21■□□□□ 0.19
USP40-213ENST00000483216 PDAP1Q13442 181 aaKnown RBP16.2■□□□□ 0.18
USP40-213ENST00000483216 PSEN1P49768 467 aa16.16■□□□□ 0.18
USP40-213ENST00000483216 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.15■□□□□ 0.18
USP40-213ENST00000483216 ZFP91Q96JP5 570 aaPredicted RBP16.15■□□□□ 0.18
USP40-213ENST00000483216 TRPC6Q9Y210 931 aa16.12■□□□□ 0.17
USP40-213ENST00000483216 CHGAP10645 457 aaKnown RBP16.11■□□□□ 0.17
USP40-213ENST00000483216 HS6ST3Q8IZP7 471 aa16.11■□□□□ 0.17
USP40-213ENST00000483216 TIE1P35590 1138 aa16.1■□□□□ 0.17
USP40-213ENST00000483216 STK25O00506 426 aa16.09■□□□□ 0.17
USP40-213ENST00000483216 BCL11BQ9C0K0 894 aaPredicted RBP16.06■□□□□ 0.16
USP40-213ENST00000483216 TMEM106CQ9BVX2 250 aa16.05■□□□□ 0.16
USP40-213ENST00000483216 BMP2KQ9NSY1 1161 aaPredicted RBP16.03■□□□□ 0.16
USP40-213ENST00000483216 STK24Q9Y6E0 443 aa16.03■□□□□ 0.16
USP40-213ENST00000483216 DNAJC5Q9H3Z4 198 aa16.02■□□□□ 0.16
USP40-213ENST00000483216 TTLL13PA6NNM8 815 aa16.01■□□□□ 0.15
USP40-213ENST00000483216 ASTLQ6HA08 431 aaPredicted RBP15.98■□□□□ 0.15
USP40-213ENST00000483216 DCBLD2Q96PD2 775 aa15.98■□□□□ 0.15
USP40-213ENST00000483216 BBXQ8WY36 941 aaPredicted RBP15.97■□□□□ 0.15
USP40-213ENST00000483216 ATMINO43313 823 aaPredicted RBP15.96■□□□□ 0.15
USP40-213ENST00000483216 CABP2Q9NPB3 220 aa15.94■□□□□ 0.14
USP40-213ENST00000483216 ATN1P54259 1190 aaPredicted RBP15.92■□□□□ 0.14
USP40-213ENST00000483216 TRIM35Q9UPQ4 493 aa15.9■□□□□ 0.14
USP40-213ENST00000483216 GOLGA2Q08379 1002 aa15.89■□□□□ 0.13
USP40-213ENST00000483216 POTEIP0CG38 1075 aa15.87■□□□□ 0.13
USP40-213ENST00000483216 EFCAB3Q8N7B9 438 aa15.87■□□□□ 0.13
USP40-213ENST00000483216 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.86■□□□□ 0.13
USP40-213ENST00000483216 NKX1-1Q15270 411 aaPredicted RBP15.85■□□□□ 0.13
USP40-213ENST00000483216 SOX12O15370 315 aa15.84■□□□□ 0.13
USP40-213ENST00000483216 MKRN3Q13064 507 aaKnown RBP15.84■□□□□ 0.13
USP40-213ENST00000483216 PELP1Q8IZL8 1130 aaKnown RBP15.81■□□□□ 0.12
USP40-213ENST00000483216 IER5LQ5T953 404 aa15.8■□□□□ 0.12
USP40-213ENST00000483216 MFRPQ9BY79 579 aa15.77■□□□□ 0.12
USP40-213ENST00000483216 SLC39A7Q92504 469 aa15.76■□□□□ 0.11
USP40-213ENST00000483216 RYDENQ9NUL5 291 aaKnown RBP15.76■□□□□ 0.11
USP40-213ENST00000483216 NLRP6P59044 892 aa15.74■□□□□ 0.11
USP40-213ENST00000483216 ILDR1Q86SU0 546 aaPredicted RBP15.74■□□□□ 0.11
USP40-213ENST00000483216 SPRYD3Q8NCJ5 442 aa15.74■□□□□ 0.11
USP40-213ENST00000483216 GTPBP6O43824 516 aaPredicted RBP15.73■□□□□ 0.11
USP40-213ENST00000483216 PHF8Q9UPP1 1060 aa15.73■□□□□ 0.11
USP40-213ENST00000483216 C7P10643 843 aa15.72■□□□□ 0.11
USP40-213ENST00000483216 FBXO22Q8NEZ5 403 aa15.72■□□□□ 0.11
USP40-213ENST00000483216 PAXIP1Q6ZW49 1069 aaPredicted RBP15.71■□□□□ 0.11
USP40-213ENST00000483216 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.71■□□□□ 0.114e-7■■■□□ 15.2
USP40-213ENST00000483216 IRX5P78411 483 aaPredicted RBP15.7■□□□□ 0.1
USP40-213ENST00000483216 PLCB2Q00722 1185 aa15.7■□□□□ 0.1
USP40-213ENST00000483216 CFAP44Q96MT7 982 aa15.67■□□□□ 0.1
USP40-213ENST00000483216 OCEL1Q9H607 264 aa15.67■□□□□ 0.1
USP40-213ENST00000483216 METRNQ9UJH8 293 aa15.66■□□□□ 0.1
USP40-213ENST00000483216 MS4A4AQ96JQ5 239 aa15.65■□□□□ 0.1
USP40-213ENST00000483216 PDCD7Q8N8D1 485 aaKnown RBP15.63■□□□□ 0.09
USP40-213ENST00000483216 SEC24BO95487 1268 aa15.62■□□□□ 0.09
USP40-213ENST00000483216 PLCG2P16885 1265 aa15.62■□□□□ 0.09
USP40-213ENST00000483216 COLQQ9Y215 455 aaPredicted RBP15.61■□□□□ 0.09
USP40-213ENST00000483216 POTEFA5A3E0 1075 aa15.6■□□□□ 0.09
USP40-213ENST00000483216 PPP1R37O75864 691 aa15.54■□□□□ 0.08
USP40-213ENST00000483216 DPY19L2Q6NUT2 758 aa15.54■□□□□ 0.08
USP40-213ENST00000483216 L3MBTL3Q96JM7 780 aaPredicted RBP15.48■□□□□ 0.07
USP40-213ENST00000483216 BOLA1Q9Y3E2 137 aa15.45■□□□□ 0.06
USP40-213ENST00000483216 TMEM121BQ9BXQ6 578 aaPredicted RBP15.43■□□□□ 0.06
USP40-213ENST00000483216 HAP1P54257 671 aaPredicted RBP15.42■□□□□ 0.06
USP40-213ENST00000483216 G3V3G9 751 aa15.41■□□□□ 0.06
USP40-213ENST00000483216 MICALL2Q8IY33 904 aa15.41■□□□□ 0.06
USP40-213ENST00000483216 TSHZ2Q9NRE2 1034 aa15.41■□□□□ 0.06
USP40-213ENST00000483216 POTEB2H3BUK9 544 aa15.37■□□□□ 0.05
USP40-213ENST00000483216 SLC24A1O60721 1099 aa15.33■□□□□ 0.04
USP40-213ENST00000483216 POTEJP0CG39 1038 aa15.31■□□□□ 0.04
USP40-213ENST00000483216 CADPS2Q86UW7 1296 aa15.3■□□□□ 0.04
USP40-213ENST00000483216 C3orf67Q6ZVT6 689 aa15.27■□□□□ 0.04
USP40-213ENST00000483216 MAMSTRQ6ZN01 415 aa15.25■□□□□ 0.03
USP40-213ENST00000483216 VSIG10Q8N0Z9 540 aa15.25■□□□□ 0.03
USP40-213ENST00000483216 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms