RNA–Protein interactions for RNA: ENST00000481040.1

COPA-203, Transcript of coatomer protein complex subunit alpha, humanhuman

TSL 3

Gene COPA, Length 578 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPA-203ENST00000481040 IFNLR1Q8IU57 520 aaPredicted RBP11.43□□□□□ -0.58
COPA-203ENST00000481040 PAK3O75914 559 aaPredicted RBP11.41□□□□□ -0.58
COPA-203ENST00000481040 CLCN6P51797 869 aa11.41□□□□□ -0.58
COPA-203ENST00000481040 VSIG10Q8N0Z9 540 aa11.41□□□□□ -0.58
COPA-203ENST00000481040 PRKCSHP14314 528 aaPredicted RBP11.4□□□□□ -0.58
COPA-203ENST00000481040 TSPYL2Q9H2G4 693 aaPredicted RBP11.4□□□□□ -0.58
COPA-203ENST00000481040 RASEFQ8IZ41 740 aa11.39□□□□□ -0.59
COPA-203ENST00000481040 PKD2Q13563 968 aa11.37□□□□□ -0.59
COPA-203ENST00000481040 CCDC61Q9Y6R9 512 aa11.37□□□□□ -0.59
COPA-203ENST00000481040 MS4A3Q96HJ5 214 aa11.36□□□□□ -0.59
COPA-203ENST00000481040 DCBLD2Q96PD2 775 aa11.36□□□□□ -0.59
COPA-203ENST00000481040 TAOK2Q9UL54 1235 aa11.36□□□□□ -0.59
COPA-203ENST00000481040 PLCD3Q8N3E9 789 aa11.35□□□□□ -0.59
COPA-203ENST00000481040 LHX8Q68G74 356 aa11.34□□□□□ -0.59
COPA-203ENST00000481040 NUBP1P53384 320 aa11.31□□□□□ -0.6
COPA-203ENST00000481040 PELP1Q8IZL8 1130 aaKnown RBP11.3□□□□□ -0.6
COPA-203ENST00000481040 PLEKHG5O94827 1062 aa11.29□□□□□ -0.6
COPA-203ENST00000481040 KIF12Q96FN5 646 aa11.29□□□□□ -0.6
COPA-203ENST00000481040 TRPC6Q9Y210 931 aa11.27□□□□□ -0.61
COPA-203ENST00000481040 MAP3K13O43283 966 aa11.23□□□□□ -0.61
COPA-203ENST00000481040 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.23□□□□□ -0.61
COPA-203ENST00000481040 POTEB2H3BUK9 544 aa11.22□□□□□ -0.61
COPA-203ENST00000481040 BBXQ8WY36 941 aaPredicted RBP11.22□□□□□ -0.61
COPA-203ENST00000481040 ATMINO43313 823 aaPredicted RBP11.21□□□□□ -0.61
COPA-203ENST00000481040 ASTLQ6HA08 431 aaPredicted RBP11.21□□□□□ -0.61
COPA-203ENST00000481040 KDM2AQ9Y2K7 1162 aa11.21□□□□□ -0.61
COPA-203ENST00000481040 TPRNQ4KMQ1 711 aa11.19□□□□□ -0.62
COPA-203ENST00000481040 ZBTB47Q9UFB7 747 aaPredicted RBP11.18□□□□□ -0.62
COPA-203ENST00000481040 ATN1P54259 1190 aaPredicted RBP11.16□□□□□ -0.62
COPA-203ENST00000481040 PAXIP1Q6ZW49 1069 aaPredicted RBP11.16□□□□□ -0.62
COPA-203ENST00000481040 BMP2KQ9NSY1 1161 aaPredicted RBP11.16□□□□□ -0.62
COPA-203ENST00000481040 ECM2O94769 699 aaPredicted RBP11.15□□□□□ -0.62
COPA-203ENST00000481040 SPOCK2Q92563 424 aa11.15□□□□□ -0.62
COPA-203ENST00000481040 CFAP44Q96MT7 982 aa11.13□□□□□ -0.63
COPA-203ENST00000481040 KLHL34Q8N239 644 aa11.12□□□□□ -0.63
COPA-203ENST00000481040 FAM212AQ96EL1 285 aa11.11□□□□□ -0.63
COPA-203ENST00000481040 METRNQ9UJH8 293 aa11.11□□□□□ -0.63
COPA-203ENST00000481040 POTEJP0CG39 1038 aa11.09□□□□□ -0.63
COPA-203ENST00000481040 IFNL1Q8IU54 200 aa11.09□□□□□ -0.63
COPA-203ENST00000481040 OTUD5Q96G74 571 aa11.09□□□□□ -0.63
COPA-203ENST00000481040 PCDHB13Q9Y5F0 798 aa11.09□□□□□ -0.63
COPA-203ENST00000481040 POTEFA5A3E0 1075 aa11.08□□□□□ -0.64
COPA-203ENST00000481040 TIE1P35590 1138 aa11.07□□□□□ -0.64
COPA-203ENST00000481040 TTLL13PA6NNM8 815 aa11.06□□□□□ -0.64
COPA-203ENST00000481040 SLC39A7Q92504 469 aa11.06□□□□□ -0.64
COPA-203ENST00000481040 DCAF8Q5TAQ9 597 aa11.05□□□□□ -0.64
COPA-203ENST00000481040 C7P10643 843 aa11.04□□□□□ -0.64
COPA-203ENST00000481040 PYGBP11216 843 aa11.04□□□□□ -0.64
COPA-203ENST00000481040 SGIP1Q9BQI5 828 aa11.04□□□□□ -0.64
COPA-203ENST00000481040 SPRYD3Q8NCJ5 442 aa11.03□□□□□ -0.64
COPA-203ENST00000481040 RGL2O15211 777 aa11.01□□□□□ -0.65
COPA-203ENST00000481040 TSHZ2Q9NRE2 1034 aa11.01□□□□□ -0.65
COPA-203ENST00000481040 COLQQ9Y215 455 aaPredicted RBP10.99□□□□□ -0.65
COPA-203ENST00000481040 TRIM35Q9UPQ4 493 aa10.98□□□□□ -0.65
COPA-203ENST00000481040 PCDHB8Q9UN66 801 aa10.97□□□□□ -0.65
COPA-203ENST00000481040 TMEM106CQ9BVX2 250 aa10.95□□□□□ -0.66
COPA-203ENST00000481040 GSE1Q14687 1217 aa10.9□□□□□ -0.66
COPA-203ENST00000481040 CHGAP10645 457 aaKnown RBP10.89□□□□□ -0.67
COPA-203ENST00000481040 NBR1Q14596 966 aa10.86□□□□□ -0.67
COPA-203ENST00000481040 IER5LQ5T953 404 aa10.86□□□□□ -0.67
COPA-203ENST00000481040 DNAJC5Q9H3Z4 198 aa10.86□□□□□ -0.67
COPA-203ENST00000481040 CHRM1P11229 460 aaPredicted RBP10.85□□□□□ -0.67
COPA-203ENST00000481040 SEC24BO95487 1268 aa10.84□□□□□ -0.67
COPA-203ENST00000481040 IRX5P78411 483 aaPredicted RBP10.83□□□□□ -0.68
COPA-203ENST00000481040 CIZ1Q9ULV3 898 aaPredicted RBP10.83□□□□□ -0.68
COPA-203ENST00000481040 ZNF467Q7Z7K2 595 aaPredicted RBP10.8□□□□□ -0.68
COPA-203ENST00000481040 LCE2DQ5TA82 110 aaPredicted RBP10.79□□□□□ -0.68
COPA-203ENST00000481040 MAMSTRQ6ZN01 415 aa10.79□□□□□ -0.68
COPA-203ENST00000481040 SCUBE2Q9NQ36 999 aa10.78□□□□□ -0.68
COPA-203ENST00000481040 PSEN1P49768 467 aa10.76□□□□□ -0.69
COPA-203ENST00000481040 HS6ST3Q8IZP7 471 aa10.76□□□□□ -0.69
COPA-203ENST00000481040 PLCG2P16885 1265 aa10.75□□□□□ -0.69
COPA-203ENST00000481040 TRIM41Q8WV44 630 aa10.75□□□□□ -0.69
COPA-203ENST00000481040 PDCD7Q8N8D1 485 aaKnown RBP10.72□□□□□ -0.69
COPA-203ENST00000481040 OCEL1Q9H607 264 aa10.72□□□□□ -0.69
COPA-203ENST00000481040 TIMELESSQ9UNS1 1208 aa10.72□□□□□ -0.69
COPA-203ENST00000481040 PDAP1Q13442 181 aaKnown RBP10.7□□□□□ -0.7
COPA-203ENST00000481040 TULP1O00294 542 aaPredicted RBP10.68□□□□□ -0.7
COPA-203ENST00000481040 RNF25Q96BH1 459 aaPredicted RBP10.68□□□□□ -0.7
COPA-203ENST00000481040 POTEMA6NI47 508 aa10.67□□□□□ -0.7
COPA-203ENST00000481040 POTEGQ6S5H5 508 aa10.66□□□□□ -0.7
COPA-203ENST00000481040 GTF3C3Q9Y5Q9 886 aa10.66□□□□□ -0.7
COPA-203ENST00000481040 ILDR1Q86SU0 546 aaPredicted RBP10.65□□□□□ -0.7
COPA-203ENST00000481040 FAM163AQ96GL9 167 aaPredicted RBP10.65□□□□□ -0.7
COPA-203ENST00000481040 SLAIN1Q8ND83 568 aa10.64□□□□□ -0.71
COPA-203ENST00000481040 CABP2Q9NPB3 220 aa10.64□□□□□ -0.71
COPA-203ENST00000481040 MKRN3Q13064 507 aaKnown RBP10.63□□□□□ -0.71
COPA-203ENST00000481040 DPY19L2Q6NUT2 758 aa10.62□□□□□ -0.71
COPA-203ENST00000481040 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.62□□□□□ -0.71
COPA-203ENST00000481040 GOLGA2Q08379 1002 aa10.61□□□□□ -0.71
COPA-203ENST00000481040 NKX1-1Q15270 411 aaPredicted RBP10.61□□□□□ -0.71
COPA-203ENST00000481040 GTPBP6O43824 516 aaPredicted RBP10.59□□□□□ -0.71
COPA-203ENST00000481040 PLSCR2Q9NRY7 297 aa10.59□□□□□ -0.71
COPA-203ENST00000481040 ERICH6Q7L0X2 663 aa10.56□□□□□ -0.72
COPA-203ENST00000481040 EFCAB3Q8N7B9 438 aa10.56□□□□□ -0.72
COPA-203ENST00000481040 RIOK3O14730 519 aaKnown RBP10.55□□□□□ -0.72
COPA-203ENST00000481040 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.53□□□□□ -0.72
COPA-203ENST00000481040 ZFP91Q96JP5 570 aaPredicted RBP10.53□□□□□ -0.72
COPA-203ENST00000481040 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.53□□□□□ -0.72
COPA-203ENST00000481040 ST18O60284 1047 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms