RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 TAOK2Q9UL54 1235 aa11.54□□□□□ -0.56
UPF3B-203ENST00000478840 HS6ST3Q8IZP7 471 aa11.53□□□□□ -0.56
UPF3B-203ENST00000478840 DNAJC5Q9H3Z4 198 aa11.53□□□□□ -0.56
UPF3B-203ENST00000478840 GSE1Q14687 1217 aa11.52□□□□□ -0.57
UPF3B-203ENST00000478840 PIP4P2Q8N4L2 257 aa11.51□□□□□ -0.57
UPF3B-203ENST00000478840 TSHZ2Q9NRE2 1034 aa11.5□□□□□ -0.57
UPF3B-203ENST00000478840 NUBP1P53384 320 aa11.49□□□□□ -0.57
UPF3B-203ENST00000478840 RNF25Q96BH1 459 aaPredicted RBP11.47□□□□□ -0.57
UPF3B-203ENST00000478840 PRKCSHP14314 528 aaPredicted RBP11.45□□□□□ -0.58
UPF3B-203ENST00000478840 FXR2P51116 673 aaKnown RBP eCLIP11.45□□□□□ -0.58
UPF3B-203ENST00000478840 PRR29P0C7W0 189 aa11.44□□□□□ -0.58
UPF3B-203ENST00000478840 CHADLQ6NUI6 762 aa11.43□□□□□ -0.58
UPF3B-203ENST00000478840 RIOK3O14730 519 aaKnown RBP11.39□□□□□ -0.59
UPF3B-203ENST00000478840 PRKAR2AP13861 404 aaKnown RBP11.38□□□□□ -0.59
UPF3B-203ENST00000478840 MNX1P50219 401 aaPredicted RBP11.38□□□□□ -0.59
UPF3B-203ENST00000478840 CREBZFQ9NS37 354 aa11.38□□□□□ -0.59
UPF3B-203ENST00000478840 CHRM1P11229 460 aaPredicted RBP11.37□□□□□ -0.59
UPF3B-203ENST00000478840 DCAF8Q5TAQ9 597 aa11.36□□□□□ -0.59
UPF3B-203ENST00000478840 NKX1-1Q15270 411 aaPredicted RBP11.34□□□□□ -0.59
UPF3B-203ENST00000478840 FAM212AQ96EL1 285 aa11.34□□□□□ -0.59
UPF3B-203ENST00000478840 TPRNQ4KMQ1 711 aa11.33□□□□□ -0.6
UPF3B-203ENST00000478840 SGIP1Q9BQI5 828 aa11.32□□□□□ -0.6
UPF3B-203ENST00000478840 VGFO15240 615 aaPredicted RBP11.31□□□□□ -0.6
UPF3B-203ENST00000478840 GTPBP6O43824 516 aaPredicted RBP11.3□□□□□ -0.6
UPF3B-203ENST00000478840 RASEFQ8IZ41 740 aa11.26□□□□□ -0.61
UPF3B-203ENST00000478840 STK25O00506 426 aa11.25□□□□□ -0.61
UPF3B-203ENST00000478840 NBR1Q14596 966 aa11.22□□□□□ -0.61
UPF3B-203ENST00000478840 RYDENQ9NUL5 291 aaKnown RBP11.2□□□□□ -0.62
UPF3B-203ENST00000478840 HAX1O00165 279 aa11.19□□□□□ -0.62
UPF3B-203ENST00000478840 FARP1Q9Y4F1 1045 aaPredicted RBP11.19□□□□□ -0.62
UPF3B-203ENST00000478840 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.18□□□□□ -0.62
UPF3B-203ENST00000478840 EVX2Q03828 476 aa11.18□□□□□ -0.62
UPF3B-203ENST00000478840 ZFP91Q96JP5 570 aaPredicted RBP11.18□□□□□ -0.62
UPF3B-203ENST00000478840 BCL11BQ9C0K0 894 aaPredicted RBP11.16□□□□□ -0.62
UPF3B-203ENST00000478840 STK24Q9Y6E0 443 aa11.14□□□□□ -0.63
UPF3B-203ENST00000478840 PYGBP11216 843 aa11.13□□□□□ -0.63
UPF3B-203ENST00000478840 C19orf67A6NJJ6 358 aa11.07□□□□□ -0.64
UPF3B-203ENST00000478840 ZNF467Q7Z7K2 595 aaPredicted RBP11.05□□□□□ -0.64
UPF3B-203ENST00000478840 SP7Q8TDD2 431 aaPredicted RBP11.04□□□□□ -0.64
UPF3B-203ENST00000478840 CD44P16070 742 aaKnown RBP11.03□□□□□ -0.64
UPF3B-203ENST00000478840 PDAP1Q13442 181 aaKnown RBP10.99□□□□□ -0.65
UPF3B-203ENST00000478840 P3H3Q8IVL6 736 aa10.99□□□□□ -0.65
UPF3B-203ENST00000478840 TSPYL2Q9H2G4 693 aaPredicted RBP10.97□□□□□ -0.65
UPF3B-203ENST00000478840 ZRANB1Q9UGI0 708 aa10.96□□□□□ -0.65
UPF3B-203ENST00000478840 CCDC61Q9Y6R9 512 aa10.95□□□□□ -0.66
UPF3B-203ENST00000478840 ZNF579Q8NAF0 562 aaKnown RBP10.93□□□□□ -0.66
UPF3B-203ENST00000478840 CADPS2Q86UW7 1296 aa10.91□□□□□ -0.66
UPF3B-203ENST00000478840 PCDHB8Q9UN66 801 aa10.91□□□□□ -0.66
UPF3B-203ENST00000478840 PCDHB13Q9Y5F0 798 aa10.91□□□□□ -0.66
UPF3B-203ENST00000478840 PHF12Q96QT6 1004 aa10.9□□□□□ -0.66
UPF3B-203ENST00000478840 MFRPQ9BY79 579 aa10.9□□□□□ -0.66
UPF3B-203ENST00000478840 PSEN1P49768 467 aa10.89□□□□□ -0.67
UPF3B-203ENST00000478840 CLCN6P51797 869 aa10.88□□□□□ -0.67
UPF3B-203ENST00000478840 WDR70Q9NW82 654 aa10.88□□□□□ -0.67
UPF3B-203ENST00000478840 KCNV2Q8TDN2 545 aa10.87□□□□□ -0.67
UPF3B-203ENST00000478840 GABBR2O75899 941 aa10.86□□□□□ -0.67
UPF3B-203ENST00000478840 PAK3O75914 559 aaPredicted RBP10.85□□□□□ -0.67
UPF3B-203ENST00000478840 FBXO22Q8NEZ5 403 aa10.81□□□□□ -0.68
UPF3B-203ENST00000478840 SOX12O15370 315 aa10.8□□□□□ -0.68
UPF3B-203ENST00000478840 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.8□□□□□ -0.68
UPF3B-203ENST00000478840 IFNL1Q8IU54 200 aa10.8□□□□□ -0.68
UPF3B-203ENST00000478840 NLRP6P59044 892 aa10.79□□□□□ -0.68
UPF3B-203ENST00000478840 KIF12Q96FN5 646 aa10.79□□□□□ -0.68
UPF3B-203ENST00000478840 ARHGEF1Q92888 912 aaKnown RBP10.78□□□□□ -0.68
UPF3B-203ENST00000478840 MAP3K13O43283 966 aa10.77□□□□□ -0.69
UPF3B-203ENST00000478840 GALR2O43603 387 aaPredicted RBP10.77□□□□□ -0.69
UPF3B-203ENST00000478840 PPP1R37O75864 691 aa10.76□□□□□ -0.69
UPF3B-203ENST00000478840 LMOD2Q6P5Q4 547 aa10.76□□□□□ -0.69
UPF3B-203ENST00000478840 EFCAB3Q8N7B9 438 aa10.76□□□□□ -0.69
UPF3B-203ENST00000478840 MS4A3Q96HJ5 214 aa10.73□□□□□ -0.69
UPF3B-203ENST00000478840 CABP2Q9NPB3 220 aa10.73□□□□□ -0.69
UPF3B-203ENST00000478840 E2F4Q16254 413 aa10.72□□□□□ -0.69
UPF3B-203ENST00000478840 TMEM132AQ24JP5 1023 aa10.72□□□□□ -0.69
UPF3B-203ENST00000478840 PHF8Q9UPP1 1060 aa10.72□□□□□ -0.69
UPF3B-203ENST00000478840 TULP1O00294 542 aaPredicted RBP10.69□□□□□ -0.7
UPF3B-203ENST00000478840 TRPC6Q9Y210 931 aa10.69□□□□□ -0.7
UPF3B-203ENST00000478840 POTEIP0CG38 1075 aa10.68□□□□□ -0.7
UPF3B-203ENST00000478840 GTF3C3Q9Y5Q9 886 aa10.68□□□□□ -0.7
UPF3B-203ENST00000478840 NCKAP5LQ9HCH0 1330 aa10.66□□□□□ -0.7
UPF3B-203ENST00000478840 TESPA1A2RU30 521 aaPredicted RBP10.65□□□□□ -0.7
UPF3B-203ENST00000478840 MFSD10Q14728 455 aa10.65□□□□□ -0.7
UPF3B-203ENST00000478840 MS4A4AQ96JQ5 239 aa10.64□□□□□ -0.71
UPF3B-203ENST00000478840 ARIH1Q9Y4X5 557 aaPredicted RBP10.64□□□□□ -0.71
UPF3B-203ENST00000478840 ERICH6Q7L0X2 663 aa10.63□□□□□ -0.71
UPF3B-203ENST00000478840 PDE4AP27815 886 aa10.62□□□□□ -0.71
UPF3B-203ENST00000478840 CRISPLD2Q9H0B8 497 aa10.62□□□□□ -0.71
UPF3B-203ENST00000478840 TIMELESSQ9UNS1 1208 aa10.62□□□□□ -0.71
UPF3B-203ENST00000478840 DCBLD2Q96PD2 775 aa10.61□□□□□ -0.71
UPF3B-203ENST00000478840 ZC3H15Q8WU90 426 aaKnown RBP10.6□□□□□ -0.71
UPF3B-203ENST00000478840 SEMA3EO15041 775 aa10.59□□□□□ -0.71
UPF3B-203ENST00000478840 LARP6Q9BRS8 491 aaKnown RBP10.58□□□□□ -0.72
UPF3B-203ENST00000478840 CAMK2BQ13554 666 aa10.56□□□□□ -0.72
UPF3B-203ENST00000478840 PELP1Q8IZL8 1130 aaKnown RBP10.56□□□□□ -0.72
UPF3B-203ENST00000478840 BRPF1P55201 1214 aaPredicted RBP10.55□□□□□ -0.72
UPF3B-203ENST00000478840 DDX27Q96GQ7 796 aaKnown RBP10.55□□□□□ -0.72
UPF3B-203ENST00000478840 SMYD5Q6GMV2 418 aa10.54□□□□□ -0.72
UPF3B-203ENST00000478840 TMEM106CQ9BVX2 250 aa10.54□□□□□ -0.72
UPF3B-203ENST00000478840 BMP2KQ9NSY1 1161 aaPredicted RBP10.54□□□□□ -0.72
UPF3B-203ENST00000478840 GOLGA2Q08379 1002 aa10.53□□□□□ -0.72
UPF3B-203ENST00000478840 ILDR1Q86SU0 546 aaPredicted RBP10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms