RNA–Protein interactions for RNA: ENST00000478440.1

ITGA4-209, Transcript of integrin subunit alpha 4, humanhuman

TSL 1 (best)

Gene ITGA4, Length 1,144 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGA4-209ENST00000478440 KLHL34Q8N239 644 aa15.62■□□□□ 0.09
ITGA4-209ENST00000478440 PCDH10Q9P2E7 1040 aa15.57■□□□□ 0.08
ITGA4-209ENST00000478440 IFNLR1Q8IU57 520 aaPredicted RBP15.49■□□□□ 0.07
ITGA4-209ENST00000478440 ZRANB1Q9UGI0 708 aa15.49■□□□□ 0.07
ITGA4-209ENST00000478440 SPOCK2Q92563 424 aa15.46■□□□□ 0.07
ITGA4-209ENST00000478440 NUBP1P53384 320 aa15.45■□□□□ 0.06
ITGA4-209ENST00000478440 FAM212AQ96EL1 285 aa15.45■□□□□ 0.06
ITGA4-209ENST00000478440 POTEB2H3BUK9 544 aa15.43■□□□□ 0.06
ITGA4-209ENST00000478440 TSPYL2Q9H2G4 693 aaPredicted RBP15.42■□□□□ 0.06
ITGA4-209ENST00000478440 ZNF579Q8NAF0 562 aaKnown RBP15.41■□□□□ 0.06
ITGA4-209ENST00000478440 RASEFQ8IZ41 740 aa15.4■□□□□ 0.06
ITGA4-209ENST00000478440 GSE1Q14687 1217 aa15.36■□□□□ 0.05
ITGA4-209ENST00000478440 DCAF8Q5TAQ9 597 aa15.34■□□□□ 0.05
ITGA4-209ENST00000478440 CCDC61Q9Y6R9 512 aa15.32■□□□□ 0.04
ITGA4-209ENST00000478440 GALR2O43603 387 aaPredicted RBP15.25■□□□□ 0.03
ITGA4-209ENST00000478440 PHF12Q96QT6 1004 aa15.25■□□□□ 0.03
ITGA4-209ENST00000478440 CIZ1Q9ULV3 898 aaPredicted RBP15.22■□□□□ 0.03
ITGA4-209ENST00000478440 TRIM41Q8WV44 630 aa15.19■□□□□ 0.02
ITGA4-209ENST00000478440 SGIP1Q9BQI5 828 aa15.19■□□□□ 0.02
ITGA4-209ENST00000478440 KIF12Q96FN5 646 aa15.18■□□□□ 0.02
ITGA4-209ENST00000478440 CHRM1P11229 460 aaPredicted RBP15.13■□□□□ 0.01
ITGA4-209ENST00000478440 LCE2DQ5TA82 110 aaPredicted RBP15.13■□□□□ 0.01
ITGA4-209ENST00000478440 MAP3K13O43283 966 aa15.11■□□□□ 0.01
ITGA4-209ENST00000478440 PYGBP11216 843 aa15.1■□□□□ 0.01
ITGA4-209ENST00000478440 PCDHB13Q9Y5F0 798 aa15.1■□□□□ 0.01
ITGA4-209ENST00000478440 MS4A3Q96HJ5 214 aa15.09■□□□□ 0.01
ITGA4-209ENST00000478440 PELP1Q8IZL8 1130 aaKnown RBP15.06■□□□□ 0
ITGA4-209ENST00000478440 ZNF467Q7Z7K2 595 aaPredicted RBP15.04■□□□□ -0
ITGA4-209ENST00000478440 FAM163AQ96GL9 167 aaPredicted RBP15.04■□□□□ -0
ITGA4-209ENST00000478440 POTEJP0CG39 1038 aa15.01□□□□□ -0.01
ITGA4-209ENST00000478440 MAMSTRQ6ZN01 415 aa15.01□□□□□ -0.01
ITGA4-209ENST00000478440 IFNL1Q8IU54 200 aa14.98□□□□□ -0.01
ITGA4-209ENST00000478440 METRNQ9UJH8 293 aa14.98□□□□□ -0.01
ITGA4-209ENST00000478440 TIE1P35590 1138 aa14.96□□□□□ -0.01
ITGA4-209ENST00000478440 ECM2O94769 699 aaPredicted RBP14.91□□□□□ -0.02
ITGA4-209ENST00000478440 C7P10643 843 aa14.9□□□□□ -0.02
ITGA4-209ENST00000478440 SLC39A7Q92504 469 aa14.9□□□□□ -0.02
ITGA4-209ENST00000478440 TAOK2Q9UL54 1235 aa14.9□□□□□ -0.02
ITGA4-209ENST00000478440 PCDHB8Q9UN66 801 aa14.9□□□□□ -0.02
ITGA4-209ENST00000478440 ASTLQ6HA08 431 aaPredicted RBP14.89□□□□□ -0.03
ITGA4-209ENST00000478440 PKD2Q13563 968 aa14.88□□□□□ -0.03
ITGA4-209ENST00000478440 ATMINO43313 823 aaPredicted RBP14.86□□□□□ -0.03
ITGA4-209ENST00000478440 SCUBE2Q9NQ36 999 aa14.86□□□□□ -0.03
ITGA4-209ENST00000478440 PDAP1Q13442 181 aaKnown RBP14.85□□□□□ -0.03
ITGA4-209ENST00000478440 CDAN1Q8IWY9 1227 aa14.85□□□□□ -0.03
ITGA4-209ENST00000478440 BMP2KQ9NSY1 1161 aaPredicted RBP14.85□□□□□ -0.03
ITGA4-209ENST00000478440 RIOK3O14730 519 aaKnown RBP14.84□□□□□ -0.03
ITGA4-209ENST00000478440 TMEM106CQ9BVX2 250 aa14.83□□□□□ -0.04
ITGA4-209ENST00000478440 TRPC6Q9Y210 931 aa14.83□□□□□ -0.04
ITGA4-209ENST00000478440 TTLL13PA6NNM8 815 aa14.82□□□□□ -0.04
ITGA4-209ENST00000478440 PSEN1P49768 467 aa14.81□□□□□ -0.04
ITGA4-209ENST00000478440 VGFO15240 615 aaPredicted RBP14.78□□□□□ -0.04
ITGA4-209ENST00000478440 ATN1P54259 1190 aaPredicted RBP14.78□□□□□ -0.04
ITGA4-209ENST00000478440 AMER1Q5JTC6 1135 aaPredicted RBP14.78□□□□□ -0.04
ITGA4-209ENST00000478440 GOLGA2Q08379 1002 aa14.74□□□□□ -0.05
ITGA4-209ENST00000478440 RNF25Q96BH1 459 aaPredicted RBP14.74□□□□□ -0.05
ITGA4-209ENST00000478440 TRIM35Q9UPQ4 493 aa14.74□□□□□ -0.05
ITGA4-209ENST00000478440 IER5LQ5T953 404 aa14.73□□□□□ -0.05
ITGA4-209ENST00000478440 RGL2O15211 777 aa14.69□□□□□ -0.06
ITGA4-209ENST00000478440 MKRN3Q13064 507 aaKnown RBP14.65□□□□□ -0.06
ITGA4-209ENST00000478440 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.64□□□□□ -0.07
ITGA4-209ENST00000478440 ZFP91Q96JP5 570 aaPredicted RBP14.64□□□□□ -0.07
ITGA4-209ENST00000478440 SEC24BO95487 1268 aa14.62□□□□□ -0.07
ITGA4-209ENST00000478440 MMRN1Q13201 1228 aa14.6□□□□□ -0.07
ITGA4-209ENST00000478440 CABP2Q9NPB3 220 aa14.6□□□□□ -0.07
ITGA4-209ENST00000478440 STK25O00506 426 aa14.58□□□□□ -0.08
ITGA4-209ENST00000478440 PLCG2P16885 1265 aa14.56□□□□□ -0.08
ITGA4-209ENST00000478440 BCL11BQ9C0K0 894 aaPredicted RBP14.56□□□□□ -0.08
ITGA4-209ENST00000478440 POTEFA5A3E0 1075 aa14.55□□□□□ -0.08
ITGA4-209ENST00000478440 STK24Q9Y6E0 443 aa14.55□□□□□ -0.08
ITGA4-209ENST00000478440 OCEL1Q9H607 264 aa14.54□□□□□ -0.08
ITGA4-209ENST00000478440 RTN4Q9NQC3 1192 aaKnown RBP14.54□□□□□ -0.08
ITGA4-209ENST00000478440 IRX5P78411 483 aaPredicted RBP14.52□□□□□ -0.09
ITGA4-209ENST00000478440 SPNS2Q8IVW8 549 aa14.51□□□□□ -0.09
ITGA4-209ENST00000478440 SOX12O15370 315 aa14.5□□□□□ -0.09
ITGA4-209ENST00000478440 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.5□□□□□ -0.09
ITGA4-209ENST00000478440 DCAF8L2P0C7V8 631 aa14.48□□□□□ -0.09
ITGA4-209ENST00000478440 HS6ST3Q8IZP7 471 aa14.47□□□□□ -0.09
ITGA4-209ENST00000478440 EFCAB3Q8N7B9 438 aa14.47□□□□□ -0.09
ITGA4-209ENST00000478440 COLQQ9Y215 455 aaPredicted RBP14.46□□□□□ -0.09
ITGA4-209ENST00000478440 CHGAP10645 457 aaKnown RBP14.45□□□□□ -0.1
ITGA4-209ENST00000478440 ST18O60284 1047 aa14.44□□□□□ -0.1
ITGA4-209ENST00000478440 ILDR1Q86SU0 546 aaPredicted RBP14.42□□□□□ -0.1
ITGA4-209ENST00000478440 L3MBTL3Q96JM7 780 aaPredicted RBP14.4□□□□□ -0.1
ITGA4-209ENST00000478440 NLRP6P59044 892 aa14.39□□□□□ -0.11
ITGA4-209ENST00000478440 PDCD7Q8N8D1 485 aaKnown RBP14.38□□□□□ -0.11
ITGA4-209ENST00000478440 G3V3G9 751 aa14.36□□□□□ -0.11
ITGA4-209ENST00000478440 DNAJC5Q9H3Z4 198 aa14.36□□□□□ -0.11
ITGA4-209ENST00000478440 RYDENQ9NUL5 291 aaKnown RBP14.33□□□□□ -0.12
ITGA4-209ENST00000478440 PHF8Q9UPP1 1060 aa14.32□□□□□ -0.12
ITGA4-209ENST00000478440 SLAIN1Q8ND83 568 aa14.28□□□□□ -0.12
ITGA4-209ENST00000478440 MFRPQ9BY79 579 aa14.28□□□□□ -0.12
ITGA4-209ENST00000478440 FBXO22Q8NEZ5 403 aa14.27□□□□□ -0.13
ITGA4-209ENST00000478440 C3orf67Q6ZVT6 689 aa14.25□□□□□ -0.13
ITGA4-209ENST00000478440 BOLA1Q9Y3E2 137 aa14.25□□□□□ -0.13
ITGA4-209ENST00000478440 DPY19L2Q6NUT2 758 aa14.23□□□□□ -0.13
ITGA4-209ENST00000478440 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.23□□□□□ -0.13
ITGA4-209ENST00000478440 MS4A4AQ96JQ5 239 aa14.22□□□□□ -0.13
ITGA4-209ENST00000478440 TMEM121BQ9BXQ6 578 aaPredicted RBP14.21□□□□□ -0.13
ITGA4-209ENST00000478440 BBXQ8WY36 941 aaPredicted RBP14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms