RNA–Protein interactions for RNA: ENST00000477983.1

LMBR1-216, Transcript of limb development membrane protein 1, humanhuman

TSL 2

Gene LMBR1, Length 605 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMBR1-216ENST00000477983 CCDC61Q9Y6R9 512 aa14.66□□□□□ -0.06
LMBR1-216ENST00000477983 NUBP1P53384 320 aa14.63□□□□□ -0.07
LMBR1-216ENST00000477983 DCBLD2Q96PD2 775 aa14.62□□□□□ -0.07
LMBR1-216ENST00000477983 VASPP50552 380 aaPredicted RBP14.59□□□□□ -0.07
LMBR1-216ENST00000477983 KIF12Q96FN5 646 aa14.55□□□□□ -0.08
LMBR1-216ENST00000477983 MS4A3Q96HJ5 214 aa14.54□□□□□ -0.08
LMBR1-216ENST00000477983 FAM212AQ96EL1 285 aa14.47□□□□□ -0.09
LMBR1-216ENST00000477983 MAP3K13O43283 966 aa14.46□□□□□ -0.09
LMBR1-216ENST00000477983 ASTLQ6HA08 431 aaPredicted RBP14.43□□□□□ -0.1
LMBR1-216ENST00000477983 KLHL34Q8N239 644 aa14.43□□□□□ -0.1
LMBR1-216ENST00000477983 SGIP1Q9BQI5 828 aa14.43□□□□□ -0.1
LMBR1-216ENST00000477983 ATMINO43313 823 aaPredicted RBP14.39□□□□□ -0.11
LMBR1-216ENST00000477983 DCAF8Q5TAQ9 597 aa14.38□□□□□ -0.11
LMBR1-216ENST00000477983 PELP1Q8IZL8 1130 aaKnown RBP14.38□□□□□ -0.11
LMBR1-216ENST00000477983 IFNLR1Q8IU57 520 aaPredicted RBP14.37□□□□□ -0.11
LMBR1-216ENST00000477983 TRPC6Q9Y210 931 aa14.34□□□□□ -0.11
LMBR1-216ENST00000477983 TIE1P35590 1138 aa14.33□□□□□ -0.12
LMBR1-216ENST00000477983 PCDHB13Q9Y5F0 798 aa14.33□□□□□ -0.12
LMBR1-216ENST00000477983 BMP2KQ9NSY1 1161 aaPredicted RBP14.31□□□□□ -0.12
LMBR1-216ENST00000477983 GSE1Q14687 1217 aa14.3□□□□□ -0.12
LMBR1-216ENST00000477983 ATN1P54259 1190 aaPredicted RBP14.29□□□□□ -0.12
LMBR1-216ENST00000477983 IFNL1Q8IU54 200 aa14.28□□□□□ -0.12
LMBR1-216ENST00000477983 SLC39A7Q92504 469 aa14.27□□□□□ -0.13
LMBR1-216ENST00000477983 SPOCK2Q92563 424 aa14.27□□□□□ -0.13
LMBR1-216ENST00000477983 C7P10643 843 aa14.26□□□□□ -0.13
LMBR1-216ENST00000477983 PYGBP11216 843 aa14.26□□□□□ -0.13
LMBR1-216ENST00000477983 TTLL13PA6NNM8 815 aa14.23□□□□□ -0.13
LMBR1-216ENST00000477983 CHRM1P11229 460 aaPredicted RBP14.22□□□□□ -0.13
LMBR1-216ENST00000477983 METRNQ9UJH8 293 aa14.22□□□□□ -0.13
LMBR1-216ENST00000477983 POTEB2H3BUK9 544 aa14.21□□□□□ -0.13
LMBR1-216ENST00000477983 PLSCR2Q9NRY7 297 aa14.19□□□□□ -0.14
LMBR1-216ENST00000477983 OTUD5Q96G74 571 aa14.14□□□□□ -0.15
LMBR1-216ENST00000477983 PCDHB8Q9UN66 801 aa14.13□□□□□ -0.15
LMBR1-216ENST00000477983 TMEM106CQ9BVX2 250 aa14.12□□□□□ -0.15
LMBR1-216ENST00000477983 TRIM35Q9UPQ4 493 aa14.12□□□□□ -0.15
LMBR1-216ENST00000477983 POTEFA5A3E0 1075 aa14.11□□□□□ -0.15
LMBR1-216ENST00000477983 ZNF467Q7Z7K2 595 aaPredicted RBP14.1□□□□□ -0.15
LMBR1-216ENST00000477983 CIZ1Q9ULV3 898 aaPredicted RBP14.1□□□□□ -0.15
LMBR1-216ENST00000477983 IER5LQ5T953 404 aa14.09□□□□□ -0.15
LMBR1-216ENST00000477983 POTEJP0CG39 1038 aa14.06□□□□□ -0.16
LMBR1-216ENST00000477983 COLQQ9Y215 455 aaPredicted RBP14.03□□□□□ -0.16
LMBR1-216ENST00000477983 TRIM41Q8WV44 630 aa14.01□□□□□ -0.17
LMBR1-216ENST00000477983 SEC24BO95487 1268 aa14□□□□□ -0.17
LMBR1-216ENST00000477983 MAMSTRQ6ZN01 415 aa13.99□□□□□ -0.17
LMBR1-216ENST00000477983 PSEN1P49768 467 aa13.95□□□□□ -0.18
LMBR1-216ENST00000477983 IRX5P78411 483 aaPredicted RBP13.95□□□□□ -0.18
LMBR1-216ENST00000477983 POTEMA6NI47 508 aa13.93□□□□□ -0.18
LMBR1-216ENST00000477983 PDAP1Q13442 181 aaKnown RBP13.93□□□□□ -0.18
LMBR1-216ENST00000477983 PLCG2P16885 1265 aa13.89□□□□□ -0.19
LMBR1-216ENST00000477983 OCEL1Q9H607 264 aa13.89□□□□□ -0.19
LMBR1-216ENST00000477983 SCUBE2Q9NQ36 999 aa13.89□□□□□ -0.19
LMBR1-216ENST00000477983 POTEGQ6S5H5 508 aa13.88□□□□□ -0.19
LMBR1-216ENST00000477983 GOLGA2Q08379 1002 aa13.83□□□□□ -0.2
LMBR1-216ENST00000477983 MKRN3Q13064 507 aaKnown RBP13.83□□□□□ -0.2
LMBR1-216ENST00000477983 RNF25Q96BH1 459 aaPredicted RBP13.79□□□□□ -0.2
LMBR1-216ENST00000477983 ILDR1Q86SU0 546 aaPredicted RBP13.78□□□□□ -0.2
LMBR1-216ENST00000477983 PDCD7Q8N8D1 485 aaKnown RBP13.78□□□□□ -0.2
LMBR1-216ENST00000477983 RIOK3O14730 519 aaKnown RBP13.77□□□□□ -0.21
LMBR1-216ENST00000477983 CABP2Q9NPB3 220 aa13.76□□□□□ -0.21
LMBR1-216ENST00000477983 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.74□□□□□ -0.215e-8■□□□□ 9.2
LMBR1-216ENST00000477983 VGFO15240 615 aaPredicted RBP13.71□□□□□ -0.21
LMBR1-216ENST00000477983 FAM163AQ96GL9 167 aaPredicted RBP13.7□□□□□ -0.22
LMBR1-216ENST00000477983 LCE2DQ5TA82 110 aaPredicted RBP13.69□□□□□ -0.22
LMBR1-216ENST00000477983 PKD2Q13563 968 aa13.68□□□□□ -0.22
LMBR1-216ENST00000477983 L3MBTL3Q96JM7 780 aaPredicted RBP13.68□□□□□ -0.22
LMBR1-216ENST00000477983 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.67□□□□□ -0.22
LMBR1-216ENST00000477983 ZFP91Q96JP5 570 aaPredicted RBP13.67□□□□□ -0.22
LMBR1-216ENST00000477983 SLAIN1Q8ND83 568 aa13.66□□□□□ -0.22
LMBR1-216ENST00000477983 ECM2O94769 699 aaPredicted RBP13.65□□□□□ -0.22
LMBR1-216ENST00000477983 EFCAB3Q8N7B9 438 aa13.65□□□□□ -0.22
LMBR1-216ENST00000477983 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.63□□□□□ -0.23
LMBR1-216ENST00000477983 TAOK2Q9UL54 1235 aa13.63□□□□□ -0.23
LMBR1-216ENST00000477983 DPY19L2Q6NUT2 758 aa13.61□□□□□ -0.23
LMBR1-216ENST00000477983 SOX12O15370 315 aa13.59□□□□□ -0.23
LMBR1-216ENST00000477983 RGL2O15211 777 aa13.55□□□□□ -0.24
LMBR1-216ENST00000477983 C3orf67Q6ZVT6 689 aa13.54□□□□□ -0.24
LMBR1-216ENST00000477983 BOLA1Q9Y3E2 137 aa13.54□□□□□ -0.24
LMBR1-216ENST00000477983 BCL11BQ9C0K0 894 aaPredicted RBP13.52□□□□□ -0.25
LMBR1-216ENST00000477983 TMEM121BQ9BXQ6 578 aaPredicted RBP13.51□□□□□ -0.25
LMBR1-216ENST00000477983 PCDH10Q9P2E7 1040 aa13.51□□□□□ -0.25
LMBR1-216ENST00000477983 MS4A4AQ96JQ5 239 aa13.48□□□□□ -0.25
LMBR1-216ENST00000477983 PHF8Q9UPP1 1060 aa13.48□□□□□ -0.25
LMBR1-216ENST00000477983 STK24Q9Y6E0 443 aa13.48□□□□□ -0.25
LMBR1-216ENST00000477983 G3V3G9 751 aa13.47□□□□□ -0.25
LMBR1-216ENST00000477983 SNPHO15079 494 aa13.47□□□□□ -0.25
LMBR1-216ENST00000477983 STK25O00506 426 aa13.46□□□□□ -0.25
LMBR1-216ENST00000477983 ST18O60284 1047 aa13.44□□□□□ -0.26
LMBR1-216ENST00000477983 NLRP6P59044 892 aa13.43□□□□□ -0.26
LMBR1-216ENST00000477983 FBXO22Q8NEZ5 403 aa13.42□□□□□ -0.26
LMBR1-216ENST00000477983 MICALL2Q8IY33 904 aa13.39□□□□□ -0.27
LMBR1-216ENST00000477983 MFRPQ9BY79 579 aa13.39□□□□□ -0.27
LMBR1-216ENST00000477983 CDAN1Q8IWY9 1227 aa13.36□□□□□ -0.27
LMBR1-216ENST00000477983 TMEM92Q6UXU6 159 aa13.3□□□□□ -0.28
LMBR1-216ENST00000477983 HS6ST3Q8IZP7 471 aa13.29□□□□□ -0.28
LMBR1-216ENST00000477983 HOXB3P14651 431 aaPredicted RBP13.27□□□□□ -0.29
LMBR1-216ENST00000477983 DNAJC5Q9H3Z4 198 aa13.23□□□□□ -0.29
LMBR1-216ENST00000477983 CHGAP10645 457 aaKnown RBP13.2□□□□□ -0.3
LMBR1-216ENST00000477983 DOK7Q18PE1 504 aa13.2□□□□□ -0.3
LMBR1-216ENST00000477983 MARVELD3Q96A59 401 aa13.2□□□□□ -0.3
LMBR1-216ENST00000477983 PPP1R37O75864 691 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms