RNA–Protein interactions for RNA: ENST00000477572.1

VPS50-213, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-213ENST00000477572 CCDC61Q9Y6R9 512 aa14.57□□□□□ -0.08
VPS50-213ENST00000477572 GALR2O43603 387 aaPredicted RBP14.55□□□□□ -0.08
VPS50-213ENST00000477572 DCAF8Q5TAQ9 597 aa14.52□□□□□ -0.09
VPS50-213ENST00000477572 FAM212AQ96EL1 285 aa14.52□□□□□ -0.09
VPS50-213ENST00000477572 CLCN6P51797 869 aa14.48□□□□□ -0.09
VPS50-213ENST00000477572 MS4A3Q96HJ5 214 aa14.48□□□□□ -0.09
VPS50-213ENST00000477572 KIF12Q96FN5 646 aa14.46□□□□□ -0.09
VPS50-213ENST00000477572 SPOCK2Q92563 424 aa14.45□□□□□ -0.1
VPS50-213ENST00000477572 MAP3K13O43283 966 aa14.44□□□□□ -0.1
VPS50-213ENST00000477572 POTEIP0CG38 1075 aa14.44□□□□□ -0.1
VPS50-213ENST00000477572 DCBLD2Q96PD2 775 aa14.44□□□□□ -0.1
VPS50-213ENST00000477572 PYGBP11216 843 aa14.39□□□□□ -0.11
VPS50-213ENST00000477572 CIZ1Q9ULV3 898 aaPredicted RBP14.37□□□□□ -0.11
VPS50-213ENST00000477572 TRPC6Q9Y210 931 aa14.35□□□□□ -0.11
VPS50-213ENST00000477572 PCDHB13Q9Y5F0 798 aa14.35□□□□□ -0.11
VPS50-213ENST00000477572 GSE1Q14687 1217 aa14.34□□□□□ -0.11
VPS50-213ENST00000477572 IFNL1Q8IU54 200 aa14.29□□□□□ -0.12
VPS50-213ENST00000477572 PELP1Q8IZL8 1130 aaKnown RBP14.25□□□□□ -0.13
VPS50-213ENST00000477572 PCDHB8Q9UN66 801 aa14.24□□□□□ -0.13
VPS50-213ENST00000477572 ATMINO43313 823 aaPredicted RBP14.23□□□□□ -0.13
VPS50-213ENST00000477572 SGIP1Q9BQI5 828 aa14.22□□□□□ -0.13
VPS50-213ENST00000477572 BMP2KQ9NSY1 1161 aaPredicted RBP14.22□□□□□ -0.13
VPS50-213ENST00000477572 ATN1P54259 1190 aaPredicted RBP14.2□□□□□ -0.14
VPS50-213ENST00000477572 ASTLQ6HA08 431 aaPredicted RBP14.2□□□□□ -0.14
VPS50-213ENST00000477572 TIE1P35590 1138 aa14.16□□□□□ -0.14
VPS50-213ENST00000477572 TTLL13PA6NNM8 815 aa14.15□□□□□ -0.14
VPS50-213ENST00000477572 CHRM1P11229 460 aaPredicted RBP14.15□□□□□ -0.14
VPS50-213ENST00000477572 TMEM106CQ9BVX2 250 aa14.13□□□□□ -0.15
VPS50-213ENST00000477572 ZNF467Q7Z7K2 595 aaPredicted RBP14.09□□□□□ -0.15
VPS50-213ENST00000477572 LHX8Q68G74 356 aa14.08□□□□□ -0.16
VPS50-213ENST00000477572 METRNQ9UJH8 293 aa14.08□□□□□ -0.16
VPS50-213ENST00000477572 TRIM35Q9UPQ4 493 aa14.07□□□□□ -0.16
VPS50-213ENST00000477572 SLC39A7Q92504 469 aa14.05□□□□□ -0.16
VPS50-213ENST00000477572 C7P10643 843 aa14.03□□□□□ -0.16
VPS50-213ENST00000477572 TRIM41Q8WV44 630 aa14.03□□□□□ -0.16
VPS50-213ENST00000477572 PSEN1P49768 467 aa14.02□□□□□ -0.17
VPS50-213ENST00000477572 POTEB2H3BUK9 544 aa14□□□□□ -0.17
VPS50-213ENST00000477572 PDAP1Q13442 181 aaKnown RBP13.97□□□□□ -0.17
VPS50-213ENST00000477572 RNF25Q96BH1 459 aaPredicted RBP13.97□□□□□ -0.17
VPS50-213ENST00000477572 ECM2O94769 699 aaPredicted RBP13.96□□□□□ -0.17
VPS50-213ENST00000477572 PKD2Q13563 968 aa13.96□□□□□ -0.17
VPS50-213ENST00000477572 POTEFA5A3E0 1075 aa13.95□□□□□ -0.18
VPS50-213ENST00000477572 COLQQ9Y215 455 aaPredicted RBP13.95□□□□□ -0.18
VPS50-213ENST00000477572 SEC24BO95487 1268 aa13.93□□□□□ -0.18
VPS50-213ENST00000477572 RIOK3O14730 519 aaKnown RBP13.92□□□□□ -0.18
VPS50-213ENST00000477572 GOLGA2Q08379 1002 aa13.89□□□□□ -0.19
VPS50-213ENST00000477572 IER5LQ5T953 404 aa13.89□□□□□ -0.19
VPS50-213ENST00000477572 POTEJP0CG39 1038 aa13.87□□□□□ -0.19
VPS50-213ENST00000477572 CABP2Q9NPB3 220 aa13.87□□□□□ -0.19
VPS50-213ENST00000477572 RGL2O15211 777 aa13.85□□□□□ -0.19
VPS50-213ENST00000477572 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.84□□□□□ -0.19
VPS50-213ENST00000477572 PLCG2P16885 1265 aa13.84□□□□□ -0.19
VPS50-213ENST00000477572 MKRN3Q13064 507 aaKnown RBP13.84□□□□□ -0.19
VPS50-213ENST00000477572 ZFP91Q96JP5 570 aaPredicted RBP13.84□□□□□ -0.19
VPS50-213ENST00000477572 IRX5P78411 483 aaPredicted RBP13.83□□□□□ -0.2
VPS50-213ENST00000477572 VGFO15240 615 aaPredicted RBP13.82□□□□□ -0.2
VPS50-213ENST00000477572 OTUD5Q96G74 571 aa13.82□□□□□ -0.2
VPS50-213ENST00000477572 OCEL1Q9H607 264 aa13.79□□□□□ -0.2
VPS50-213ENST00000477572 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.77□□□□□ -0.21
VPS50-213ENST00000477572 EFCAB3Q8N7B9 438 aa13.75□□□□□ -0.21
VPS50-213ENST00000477572 BCL11BQ9C0K0 894 aaPredicted RBP13.73□□□□□ -0.21
VPS50-213ENST00000477572 PDCD7Q8N8D1 485 aaKnown RBP13.71□□□□□ -0.21
VPS50-213ENST00000477572 STK24Q9Y6E0 443 aa13.71□□□□□ -0.21
VPS50-213ENST00000477572 STK25O00506 426 aa13.7□□□□□ -0.22
VPS50-213ENST00000477572 TAOK2Q9UL54 1235 aa13.7□□□□□ -0.22
VPS50-213ENST00000477572 MAMSTRQ6ZN01 415 aa13.69□□□□□ -0.22
VPS50-213ENST00000477572 SCUBE2Q9NQ36 999 aa13.69□□□□□ -0.22
VPS50-213ENST00000477572 DPY19L2Q6NUT2 758 aa13.68□□□□□ -0.22
VPS50-213ENST00000477572 ILDR1Q86SU0 546 aaPredicted RBP13.61□□□□□ -0.23
VPS50-213ENST00000477572 PHF8Q9UPP1 1060 aa13.61□□□□□ -0.23
VPS50-213ENST00000477572 SOX12O15370 315 aa13.56□□□□□ -0.24
VPS50-213ENST00000477572 L3MBTL3Q96JM7 780 aaPredicted RBP13.56□□□□□ -0.24
VPS50-213ENST00000477572 CHGAP10645 457 aaKnown RBP13.55□□□□□ -0.24
VPS50-213ENST00000477572 SLAIN1Q8ND83 568 aa13.55□□□□□ -0.24
VPS50-213ENST00000477572 MS4A4AQ96JQ5 239 aa13.55□□□□□ -0.24
VPS50-213ENST00000477572 DCAF8L2P0C7V8 631 aa13.54□□□□□ -0.24
VPS50-213ENST00000477572 C3orf67Q6ZVT6 689 aa13.52□□□□□ -0.25
VPS50-213ENST00000477572 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.52□□□□□ -0.25
VPS50-213ENST00000477572 G3V3G9 751 aa13.51□□□□□ -0.25
VPS50-213ENST00000477572 MFRPQ9BY79 579 aa13.51□□□□□ -0.25
VPS50-213ENST00000477572 BOLA1Q9Y3E2 137 aa13.51□□□□□ -0.25
VPS50-213ENST00000477572 NLRP6P59044 892 aa13.49□□□□□ -0.25
VPS50-213ENST00000477572 HS6ST3Q8IZP7 471 aa13.48□□□□□ -0.25
VPS50-213ENST00000477572 FBXO22Q8NEZ5 403 aa13.48□□□□□ -0.25
VPS50-213ENST00000477572 RTN4Q9NQC3 1192 aaKnown RBP13.47□□□□□ -0.25
VPS50-213ENST00000477572 FAM163AQ96GL9 167 aaPredicted RBP13.44□□□□□ -0.26
VPS50-213ENST00000477572 MICALL2Q8IY33 904 aa13.42□□□□□ -0.26
VPS50-213ENST00000477572 AMER1Q5JTC6 1135 aaPredicted RBP13.41□□□□□ -0.26
VPS50-213ENST00000477572 TMEM121BQ9BXQ6 578 aaPredicted RBP13.39□□□□□ -0.27
VPS50-213ENST00000477572 NKX1-1Q15270 411 aaPredicted RBP13.37□□□□□ -0.27
VPS50-213ENST00000477572 PPP1R37O75864 691 aa13.35□□□□□ -0.27
VPS50-213ENST00000477572 LCE2DQ5TA82 110 aaPredicted RBP13.32□□□□□ -0.28
VPS50-213ENST00000477572 TMEM92Q6UXU6 159 aa13.32□□□□□ -0.28
VPS50-213ENST00000477572 ST18O60284 1047 aa13.25□□□□□ -0.29
VPS50-213ENST00000477572 DNAJC5Q9H3Z4 198 aa13.25□□□□□ -0.29
VPS50-213ENST00000477572 POTEMA6NI47 508 aa13.24□□□□□ -0.29
VPS50-213ENST00000477572 SNPHO15079 494 aa13.24□□□□□ -0.29
VPS50-213ENST00000477572 POTEGQ6S5H5 508 aa13.23□□□□□ -0.29
VPS50-213ENST00000477572 GTPBP6O43824 516 aaPredicted RBP13.18□□□□□ -0.3
VPS50-213ENST00000477572 HOXB3P14651 431 aaPredicted RBP13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms