RNA–Protein interactions for RNA: ENST00000477461.1

UBR3-209, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 4

Gene UBR3, Length 595 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-209ENST00000477461 VASPP50552 380 aaPredicted RBP13.74□□□□□ -0.21
UBR3-209ENST00000477461 NUBP1P53384 320 aa13.72□□□□□ -0.21
UBR3-209ENST00000477461 KLHL34Q8N239 644 aa13.72□□□□□ -0.21
UBR3-209ENST00000477461 CCDC61Q9Y6R9 512 aa13.72□□□□□ -0.21
UBR3-209ENST00000477461 MS4A3Q96HJ5 214 aa13.68□□□□□ -0.22
UBR3-209ENST00000477461 KIF12Q96FN5 646 aa13.64□□□□□ -0.23
UBR3-209ENST00000477461 DCAF8Q5TAQ9 597 aa13.62□□□□□ -0.23
UBR3-209ENST00000477461 MAP3K13O43283 966 aa13.61□□□□□ -0.23
UBR3-209ENST00000477461 FAM212AQ96EL1 285 aa13.61□□□□□ -0.23
UBR3-209ENST00000477461 IFNLR1Q8IU57 520 aaPredicted RBP13.56□□□□□ -0.24
UBR3-209ENST00000477461 TRPC6Q9Y210 931 aa13.54□□□□□ -0.24
UBR3-209ENST00000477461 PELP1Q8IZL8 1130 aaKnown RBP13.53□□□□□ -0.24
UBR3-209ENST00000477461 LHX8Q68G74 356 aa13.52□□□□□ -0.25
UBR3-209ENST00000477461 PCDHB13Q9Y5F0 798 aa13.51□□□□□ -0.25
UBR3-209ENST00000477461 PYGBP11216 843 aa13.5□□□□□ -0.25
UBR3-209ENST00000477461 ATMINO43313 823 aaPredicted RBP13.48□□□□□ -0.25
UBR3-209ENST00000477461 ASTLQ6HA08 431 aaPredicted RBP13.45□□□□□ -0.26
UBR3-209ENST00000477461 SPOCK2Q92563 424 aa13.45□□□□□ -0.26
UBR3-209ENST00000477461 ATN1P54259 1190 aaPredicted RBP13.44□□□□□ -0.26
UBR3-209ENST00000477461 IFNL1Q8IU54 200 aa13.44□□□□□ -0.26
UBR3-209ENST00000477461 BMP2KQ9NSY1 1161 aaPredicted RBP13.43□□□□□ -0.26
UBR3-209ENST00000477461 GSE1Q14687 1217 aa13.41□□□□□ -0.26
UBR3-209ENST00000477461 CIZ1Q9ULV3 898 aaPredicted RBP13.41□□□□□ -0.26
UBR3-209ENST00000477461 SGIP1Q9BQI5 828 aa13.39□□□□□ -0.27
UBR3-209ENST00000477461 PCDHB8Q9UN66 801 aa13.38□□□□□ -0.27
UBR3-209ENST00000477461 TIE1P35590 1138 aa13.37□□□□□ -0.27
UBR3-209ENST00000477461 TTLL13PA6NNM8 815 aa13.36□□□□□ -0.27
UBR3-209ENST00000477461 METRNQ9UJH8 293 aa13.36□□□□□ -0.27
UBR3-209ENST00000477461 POTEB2H3BUK9 544 aa13.34□□□□□ -0.27
UBR3-209ENST00000477461 SLC39A7Q92504 469 aa13.33□□□□□ -0.28
UBR3-209ENST00000477461 C7P10643 843 aa13.32□□□□□ -0.28
UBR3-209ENST00000477461 TMEM106CQ9BVX2 250 aa13.31□□□□□ -0.28
UBR3-209ENST00000477461 TRIM35Q9UPQ4 493 aa13.29□□□□□ -0.28
UBR3-209ENST00000477461 CHRM1P11229 460 aaPredicted RBP13.23□□□□□ -0.29
UBR3-209ENST00000477461 POTEFA5A3E0 1075 aa13.22□□□□□ -0.29
UBR3-209ENST00000477461 SEC24BO95487 1268 aa13.21□□□□□ -0.29
UBR3-209ENST00000477461 COLQQ9Y215 455 aaPredicted RBP13.21□□□□□ -0.29
UBR3-209ENST00000477461 ZNF467Q7Z7K2 595 aaPredicted RBP13.2□□□□□ -0.3
UBR3-209ENST00000477461 OTUD5Q96G74 571 aa13.2□□□□□ -0.3
UBR3-209ENST00000477461 POTEJP0CG39 1038 aa13.19□□□□□ -0.3
UBR3-209ENST00000477461 PSEN1P49768 467 aa13.15□□□□□ -0.3
UBR3-209ENST00000477461 IER5LQ5T953 404 aa13.12□□□□□ -0.31
UBR3-209ENST00000477461 PDAP1Q13442 181 aaKnown RBP13.08□□□□□ -0.32
UBR3-209ENST00000477461 PLCG2P16885 1265 aa13.07□□□□□ -0.32
UBR3-209ENST00000477461 GOLGA2Q08379 1002 aa13.07□□□□□ -0.32
UBR3-209ENST00000477461 IRX5P78411 483 aaPredicted RBP13.05□□□□□ -0.32
UBR3-209ENST00000477461 TRIM41Q8WV44 630 aa13.05□□□□□ -0.32
UBR3-209ENST00000477461 MKRN3Q13064 507 aaKnown RBP13.03□□□□□ -0.32
UBR3-209ENST00000477461 MAMSTRQ6ZN01 415 aa13.03□□□□□ -0.32
UBR3-209ENST00000477461 OCEL1Q9H607 264 aa13.02□□□□□ -0.33
UBR3-209ENST00000477461 CABP2Q9NPB3 220 aa13.01□□□□□ -0.33
UBR3-209ENST00000477461 SCUBE2Q9NQ36 999 aa13.01□□□□□ -0.33
UBR3-209ENST00000477461 RNF25Q96BH1 459 aaPredicted RBP12.99□□□□□ -0.33
UBR3-209ENST00000477461 RIOK3O14730 519 aaKnown RBP12.96□□□□□ -0.33
UBR3-209ENST00000477461 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.96□□□□□ -0.332e-7■■■□□ 15.3
UBR3-209ENST00000477461 ECM2O94769 699 aaPredicted RBP12.93□□□□□ -0.34
UBR3-209ENST00000477461 PKD2Q13563 968 aa12.91□□□□□ -0.34
UBR3-209ENST00000477461 PDCD7Q8N8D1 485 aaKnown RBP12.91□□□□□ -0.34
UBR3-209ENST00000477461 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.9□□□□□ -0.34
UBR3-209ENST00000477461 ZFP91Q96JP5 570 aaPredicted RBP12.9□□□□□ -0.34
UBR3-209ENST00000477461 DPY19L2Q6NUT2 758 aa12.89□□□□□ -0.35
UBR3-209ENST00000477461 EFCAB3Q8N7B9 438 aa12.89□□□□□ -0.35
UBR3-209ENST00000477461 VGFO15240 615 aaPredicted RBP12.87□□□□□ -0.35
UBR3-209ENST00000477461 SLAIN1Q8ND83 568 aa12.87□□□□□ -0.35
UBR3-209ENST00000477461 FAM163AQ96GL9 167 aaPredicted RBP12.86□□□□□ -0.35
UBR3-209ENST00000477461 RGL2O15211 777 aa12.83□□□□□ -0.36
UBR3-209ENST00000477461 L3MBTL3Q96JM7 780 aaPredicted RBP12.81□□□□□ -0.36
UBR3-209ENST00000477461 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.8□□□□□ -0.36
UBR3-209ENST00000477461 BCL11BQ9C0K0 894 aaPredicted RBP12.79□□□□□ -0.36
UBR3-209ENST00000477461 ILDR1Q86SU0 546 aaPredicted RBP12.78□□□□□ -0.36
UBR3-209ENST00000477461 STK24Q9Y6E0 443 aa12.78□□□□□ -0.36
UBR3-209ENST00000477461 C3orf67Q6ZVT6 689 aa12.76□□□□□ -0.37
UBR3-209ENST00000477461 STK25O00506 426 aa12.75□□□□□ -0.37
UBR3-209ENST00000477461 TAOK2Q9UL54 1235 aa12.75□□□□□ -0.37
UBR3-209ENST00000477461 PHF8Q9UPP1 1060 aa12.74□□□□□ -0.37
UBR3-209ENST00000477461 G3V3G9 751 aa12.73□□□□□ -0.37
UBR3-209ENST00000477461 POTEMA6NI47 508 aa12.71□□□□□ -0.37
UBR3-209ENST00000477461 LCE2DQ5TA82 110 aaPredicted RBP12.71□□□□□ -0.37
UBR3-209ENST00000477461 POTEGQ6S5H5 508 aa12.71□□□□□ -0.37
UBR3-209ENST00000477461 BOLA1Q9Y3E2 137 aa12.71□□□□□ -0.37
UBR3-209ENST00000477461 SOX12O15370 315 aa12.7□□□□□ -0.38
UBR3-209ENST00000477461 MS4A4AQ96JQ5 239 aa12.67□□□□□ -0.38
UBR3-209ENST00000477461 ST18O60284 1047 aa12.62□□□□□ -0.39
UBR3-209ENST00000477461 NLRP6P59044 892 aa12.62□□□□□ -0.39
UBR3-209ENST00000477461 MICALL2Q8IY33 904 aa12.6□□□□□ -0.39
UBR3-209ENST00000477461 MFRPQ9BY79 579 aa12.6□□□□□ -0.39
UBR3-209ENST00000477461 FBXO22Q8NEZ5 403 aa12.59□□□□□ -0.39
UBR3-209ENST00000477461 TMEM121BQ9BXQ6 578 aaPredicted RBP12.58□□□□□ -0.4
UBR3-209ENST00000477461 SNPHO15079 494 aa12.57□□□□□ -0.4
UBR3-209ENST00000477461 CHGAP10645 457 aaKnown RBP12.55□□□□□ -0.4
UBR3-209ENST00000477461 TMEM92Q6UXU6 159 aa12.52□□□□□ -0.41
UBR3-209ENST00000477461 MARVELD3Q96A59 401 aa12.51□□□□□ -0.41
UBR3-209ENST00000477461 PLSCR2Q9NRY7 297 aa12.48□□□□□ -0.41
UBR3-209ENST00000477461 DCAF8L2P0C7V8 631 aa12.47□□□□□ -0.41
UBR3-209ENST00000477461 HS6ST3Q8IZP7 471 aa12.47□□□□□ -0.41
UBR3-209ENST00000477461 PPP1R37O75864 691 aa12.46□□□□□ -0.41
UBR3-209ENST00000477461 HOXB3P14651 431 aaPredicted RBP12.44□□□□□ -0.42
UBR3-209ENST00000477461 CDAN1Q8IWY9 1227 aa12.41□□□□□ -0.42
UBR3-209ENST00000477461 ZNF710Q8N1W2 664 aa12.4□□□□□ -0.42
UBR3-209ENST00000477461 EMP3P54852 163 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 80.2 ms