RNA–Protein interactions for RNA: ENST00000477237.1

XRN1-211, Transcript of 5'-3' exoribonuclease 1, humanhuman

TSL 5

Gene XRN1, Length 686 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRN1-211ENST00000477237 ATMINO43313 823 aaPredicted RBP12.34□□□□□ -0.43
XRN1-211ENST00000477237 POTEJP0CG39 1038 aa12.34□□□□□ -0.43
XRN1-211ENST00000477237 EHMT2Q96KQ7 1210 aa12.32□□□□□ -0.44
XRN1-211ENST00000477237 SLC39A7Q92504 469 aa12.3□□□□□ -0.44
XRN1-211ENST00000477237 C7P10643 843 aa12.29□□□□□ -0.44
XRN1-211ENST00000477237 TSPYL2Q9H2G4 693 aaPredicted RBP12.26□□□□□ -0.45
XRN1-211ENST00000477237 ATN1P54259 1190 aaPredicted RBP12.23□□□□□ -0.45
XRN1-211ENST00000477237 CCDC61Q9Y6R9 512 aa12.23□□□□□ -0.45
XRN1-211ENST00000477237 MAMSTRQ6ZN01 415 aa12.2□□□□□ -0.46
XRN1-211ENST00000477237 LCE2DQ5TA82 110 aaPredicted RBP12.19□□□□□ -0.46
XRN1-211ENST00000477237 PROM2Q8N271 834 aa12.19□□□□□ -0.46
XRN1-211ENST00000477237 KIF12Q96FN5 646 aa12.18□□□□□ -0.46
XRN1-211ENST00000477237 PCDH10Q9P2E7 1040 aa12.16□□□□□ -0.46
XRN1-211ENST00000477237 POTEFA5A3E0 1075 aa12.15□□□□□ -0.46
XRN1-211ENST00000477237 TRPC6Q9Y210 931 aa12.15□□□□□ -0.46
XRN1-211ENST00000477237 BMP2KQ9NSY1 1161 aaPredicted RBP12.14□□□□□ -0.47
XRN1-211ENST00000477237 FAM163AQ96GL9 167 aaPredicted RBP12.13□□□□□ -0.47
XRN1-211ENST00000477237 SCUBE2Q9NQ36 999 aa12.12□□□□□ -0.47
XRN1-211ENST00000477237 MAP3K13O43283 966 aa12.09□□□□□ -0.47
XRN1-211ENST00000477237 RASEFQ8IZ41 740 aa12.06□□□□□ -0.48
XRN1-211ENST00000477237 TIE1P35590 1138 aa12.05□□□□□ -0.48
XRN1-211ENST00000477237 COLQQ9Y215 455 aaPredicted RBP12.03□□□□□ -0.48
XRN1-211ENST00000477237 MIER1Q8N108 512 aa12.01□□□□□ -0.49
XRN1-211ENST00000477237 TTLL13PA6NNM8 815 aa12□□□□□ -0.49
XRN1-211ENST00000477237 PLEKHG5O94827 1062 aa11.98□□□□□ -0.49
XRN1-211ENST00000477237 SEC24BO95487 1268 aa11.96□□□□□ -0.49
XRN1-211ENST00000477237 TRIM35Q9UPQ4 493 aa11.92□□□□□ -0.5
XRN1-211ENST00000477237 PCDHB13Q9Y5F0 798 aa11.9□□□□□ -0.5
XRN1-211ENST00000477237 IER5LQ5T953 404 aa11.89□□□□□ -0.51
XRN1-211ENST00000477237 SGIP1Q9BQI5 828 aa11.88□□□□□ -0.51
XRN1-211ENST00000477237 CDAN1Q8IWY9 1227 aa11.87□□□□□ -0.51
XRN1-211ENST00000477237 PLCD3Q8N3E9 789 aa11.86□□□□□ -0.51
XRN1-211ENST00000477237 NUBP1P53384 320 aa11.84□□□□□ -0.51
XRN1-211ENST00000477237 IFNL1Q8IU54 200 aa11.84□□□□□ -0.51
XRN1-211ENST00000477237 SLAIN1Q8ND83 568 aa11.82□□□□□ -0.52
XRN1-211ENST00000477237 ST18O60284 1047 aa11.8□□□□□ -0.52
XRN1-211ENST00000477237 TMEM106CQ9BVX2 250 aa11.79□□□□□ -0.52
XRN1-211ENST00000477237 ZBTB47Q9UFB7 747 aaPredicted RBP11.75□□□□□ -0.53
XRN1-211ENST00000477237 PLCG2P16885 1265 aa11.74□□□□□ -0.53
XRN1-211ENST00000477237 IRX5P78411 483 aaPredicted RBP11.73□□□□□ -0.53
XRN1-211ENST00000477237 FAM212AQ96EL1 285 aa11.73□□□□□ -0.53
XRN1-211ENST00000477237 OCEL1Q9H607 264 aa11.65□□□□□ -0.54
XRN1-211ENST00000477237 PYGBP11216 843 aa11.62□□□□□ -0.55
XRN1-211ENST00000477237 MMRN1Q13201 1228 aa11.6□□□□□ -0.55
XRN1-211ENST00000477237 DCAF8Q5TAQ9 597 aa11.6□□□□□ -0.55
XRN1-211ENST00000477237 SPNS2Q8IVW8 549 aa11.6□□□□□ -0.55
XRN1-211ENST00000477237 PCDHB8Q9UN66 801 aa11.6□□□□□ -0.55
XRN1-211ENST00000477237 TMEM121BQ9BXQ6 578 aaPredicted RBP11.59□□□□□ -0.55
XRN1-211ENST00000477237 MARVELD3Q96A59 401 aa11.58□□□□□ -0.56
XRN1-211ENST00000477237 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.58□□□□□ -0.56
XRN1-211ENST00000477237 SNPHO15079 494 aa11.56□□□□□ -0.56
XRN1-211ENST00000477237 FKBP8Q14318 412 aa11.54□□□□□ -0.56
XRN1-211ENST00000477237 PDCD7Q8N8D1 485 aaKnown RBP11.51□□□□□ -0.57
XRN1-211ENST00000477237 EMP3P54852 163 aa11.43□□□□□ -0.58
XRN1-211ENST00000477237 C3orf67Q6ZVT6 689 aa11.43□□□□□ -0.58
XRN1-211ENST00000477237 POTEB3A0JP26 581 aa11.42□□□□□ -0.58
XRN1-211ENST00000477237 POTEBQ6S5H4 581 aa11.42□□□□□ -0.58
XRN1-211ENST00000477237 MKRN3Q13064 507 aaKnown RBP11.41□□□□□ -0.58
XRN1-211ENST00000477237 L3MBTL3Q96JM7 780 aaPredicted RBP11.41□□□□□ -0.58
XRN1-211ENST00000477237 GOLGA2Q08379 1002 aa11.4□□□□□ -0.58
XRN1-211ENST00000477237 ZNF467Q7Z7K2 595 aaPredicted RBP11.4□□□□□ -0.58
XRN1-211ENST00000477237 KRTAP3-3Q9BYR6 98 aa11.39□□□□□ -0.59
XRN1-211ENST00000477237 KRTAP3-2Q9BYR7 98 aa11.39□□□□□ -0.59
XRN1-211ENST00000477237 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.38□□□□□ -0.591e-7■■■□□ 15.4
XRN1-211ENST00000477237 HS3ST6Q96QI5 342 aa11.37□□□□□ -0.59
XRN1-211ENST00000477237 FBXO3Q9UK99 471 aa11.37□□□□□ -0.59
XRN1-211ENST00000477237 FAM205CA6NFA0 338 aa11.36□□□□□ -0.59
XRN1-211ENST00000477237 GSE1Q14687 1217 aa11.36□□□□□ -0.59
XRN1-211ENST00000477237 CHRM1P11229 460 aaPredicted RBP11.34□□□□□ -0.59
XRN1-211ENST00000477237 PSEN1P49768 467 aa11.34□□□□□ -0.59
XRN1-211ENST00000477237 KLHL34Q8N239 644 aa11.34□□□□□ -0.59
XRN1-211ENST00000477237 DPY19L2Q6NUT2 758 aa11.32□□□□□ -0.6
XRN1-211ENST00000477237 ILDR1Q86SU0 546 aaPredicted RBP11.31□□□□□ -0.6
XRN1-211ENST00000477237 VASPP50552 380 aaPredicted RBP11.28□□□□□ -0.6
XRN1-211ENST00000477237 HOXB3P14651 431 aaPredicted RBP11.25□□□□□ -0.61
XRN1-211ENST00000477237 PDAP1Q13442 181 aaKnown RBP11.24□□□□□ -0.61
XRN1-211ENST00000477237 CABP2Q9NPB3 220 aa11.22□□□□□ -0.61
XRN1-211ENST00000477237 BOLA1Q9Y3E2 137 aa11.22□□□□□ -0.61
XRN1-211ENST00000477237 G3V3G9 751 aa11.17□□□□□ -0.62
XRN1-211ENST00000477237 HOXB1P14653 301 aaPredicted RBP11.17□□□□□ -0.62
XRN1-211ENST00000477237 ZNF710Q8N1W2 664 aa11.14□□□□□ -0.63
XRN1-211ENST00000477237 ERBB3P21860 1342 aa11.12□□□□□ -0.63
XRN1-211ENST00000477237 DOK7Q18PE1 504 aa11.11□□□□□ -0.63
XRN1-211ENST00000477237 CIZ1Q9ULV3 898 aaPredicted RBP11.11□□□□□ -0.63
XRN1-211ENST00000477237 SPOCK2Q92563 424 aa11.09□□□□□ -0.63
XRN1-211ENST00000477237 IFNLR1Q8IU57 520 aaPredicted RBP11.07□□□□□ -0.64
XRN1-211ENST00000477237 RNF166Q96A37 237 aaPredicted RBP11.07□□□□□ -0.64
XRN1-211ENST00000477237 VARS2Q5ST30 1063 aaKnown RBP11.06□□□□□ -0.64
XRN1-211ENST00000477237 EFCAB3Q8N7B9 438 aa11.05□□□□□ -0.64
XRN1-211ENST00000477237 TMEM92Q6UXU6 159 aa11.03□□□□□ -0.64
XRN1-211ENST00000477237 RIMBP2O15034 1052 aa11.02□□□□□ -0.65
XRN1-211ENST00000477237 MYT1LQ9UL68 1186 aa11□□□□□ -0.65
XRN1-211ENST00000477237 MICALL2Q8IY33 904 aa10.99□□□□□ -0.65
XRN1-211ENST00000477237 ZNF687Q8N1G0 1237 aa10.98□□□□□ -0.65
XRN1-211ENST00000477237 GPR153Q6NV75 609 aa10.97□□□□□ -0.65
XRN1-211ENST00000477237 ZSWIM6Q9HCJ5 1215 aa10.96□□□□□ -0.65
XRN1-211ENST00000477237 MS4A4AQ96JQ5 239 aa10.92□□□□□ -0.66
XRN1-211ENST00000477237 ARSIQ5FYB1 569 aa10.89□□□□□ -0.67
XRN1-211ENST00000477237 SOX12O15370 315 aa10.88□□□□□ -0.67
XRN1-211ENST00000477237 TRIM41Q8WV44 630 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms