RNA–Protein interactions for RNA: ENST00000475912.1

PRKD3-208, Transcript of protein kinase D3, human

TSL 3

Gene PRKD3, Length 760 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKD3-208	ENST00000475912	PHF12	Q96QT6	1004 aa		14.42	□□□□□ -0.1
PRKD3-208	ENST00000475912	SPOCK2	Q92563	424 aa		14.4	□□□□□ -0.1
PRKD3-208	ENST00000475912	FAM212A	Q96EL1	285 aa		14.39	□□□□□ -0.11
PRKD3-208	ENST00000475912	CCDC61	Q9Y6R9	512 aa		14.38	□□□□□ -0.11
PRKD3-208	ENST00000475912	DCAF8	Q5TAQ9	597 aa		14.35	□□□□□ -0.11
PRKD3-208	ENST00000475912	CLCN6	P51797	869 aa		14.28	□□□□□ -0.12
PRKD3-208	ENST00000475912	GALR2	O43603	387 aa	Predicted RBP	14.26	□□□□□ -0.13
PRKD3-208	ENST00000475912	GSE1	Q14687	1217 aa		14.26	□□□□□ -0.13
PRKD3-208	ENST00000475912	KIF12	Q96FN5	646 aa		14.26	□□□□□ -0.13
PRKD3-208	ENST00000475912	CIZ1	Q9ULV3	898 aa	Predicted RBP	14.24	□□□□□ -0.13
PRKD3-208	ENST00000475912	MS4A3	Q96HJ5	214 aa		14.23	□□□□□ -0.13
PRKD3-208	ENST00000475912	MAP3K13	O43283	966 aa		14.22	□□□□□ -0.13
PRKD3-208	ENST00000475912	PYGB	P11216	843 aa		14.21	□□□□□ -0.13
PRKD3-208	ENST00000475912	POTEI	P0CG38	1075 aa		14.17	□□□□□ -0.14
PRKD3-208	ENST00000475912	PCDHB13	Q9Y5F0	798 aa		14.15	□□□□□ -0.14
PRKD3-208	ENST00000475912	DCBLD2	Q96PD2	775 aa		14.11	□□□□□ -0.15
PRKD3-208	ENST00000475912	SGIP1	Q9BQI5	828 aa		14.11	□□□□□ -0.15
PRKD3-208	ENST00000475912	IFNL1	Q8IU54	200 aa		14.09	□□□□□ -0.15
PRKD3-208	ENST00000475912	TRPC6	Q9Y210	931 aa		14.08	□□□□□ -0.16
PRKD3-208	ENST00000475912	CHRM1	P11229	460 aa	Predicted RBP	14.07	□□□□□ -0.16
PRKD3-208	ENST00000475912	PCDHB8	Q9UN66	801 aa		14.04	□□□□□ -0.16
PRKD3-208	ENST00000475912	TRIM41	Q8WV44	630 aa		14.02	□□□□□ -0.17
PRKD3-208	ENST00000475912	BMP2K	Q9NSY1	1161 aa	Predicted RBP	13.99	□□□□□ -0.17
PRKD3-208	ENST00000475912	ZNF467	Q7Z7K2	595 aa	Predicted RBP	13.98	□□□□□ -0.17
PRKD3-208	ENST00000475912	ATMIN	O43313	823 aa	Predicted RBP	13.97	□□□□□ -0.17
PRKD3-208	ENST00000475912	TIE1	P35590	1138 aa		13.97	□□□□□ -0.17
PRKD3-208	ENST00000475912	ASTL	Q6HA08	431 aa	Predicted RBP	13.97	□□□□□ -0.17
PRKD3-208	ENST00000475912	PKD2	Q13563	968 aa		13.96	□□□□□ -0.17
PRKD3-208	ENST00000475912	ATN1	P54259	1190 aa	Predicted RBP	13.94	□□□□□ -0.18
PRKD3-208	ENST00000475912	PELP1	Q8IZL8	1130 aa	Known RBP	13.94	□□□□□ -0.18
PRKD3-208	ENST00000475912	TTLL13P	A6NNM8	815 aa		13.93	□□□□□ -0.18
PRKD3-208	ENST00000475912	ECM2	O94769	699 aa	Predicted RBP	13.93	□□□□□ -0.18
PRKD3-208	ENST00000475912	TMEM106C	Q9BVX2	250 aa		13.91	□□□□□ -0.18
PRKD3-208	ENST00000475912	RNF25	Q96BH1	459 aa	Predicted RBP	13.9	□□□□□ -0.18
PRKD3-208	ENST00000475912	PLSCR2	Q9NRY7	297 aa		13.87	□□□□□ -0.19
PRKD3-208	ENST00000475912	PSEN1	P49768	467 aa		13.86	□□□□□ -0.19
PRKD3-208	ENST00000475912	RIOK3	O14730	519 aa	Known RBP	13.85	□□□□□ -0.19
PRKD3-208	ENST00000475912	PDAP1	Q13442	181 aa	Known RBP	13.85	□□□□□ -0.19
PRKD3-208	ENST00000475912	TRIM35	Q9UPQ4	493 aa		13.85	□□□□□ -0.19
PRKD3-208	ENST00000475912	SLC39A7	Q92504	469 aa		13.82	□□□□□ -0.2
PRKD3-208	ENST00000475912	RGL2	O15211	777 aa		13.81	□□□□□ -0.2
PRKD3-208	ENST00000475912	METRN	Q9UJH8	293 aa		13.8	□□□□□ -0.2
PRKD3-208	ENST00000475912	C7	P10643	843 aa		13.77	□□□□□ -0.21
PRKD3-208	ENST00000475912	VGF	O15240	615 aa	Predicted RBP	13.76	□□□□□ -0.21
PRKD3-208	ENST00000475912	OTUD5	Q96G74	571 aa		13.76	□□□□□ -0.21
PRKD3-208	ENST00000475912	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	13.73	□□□□□ -0.21
PRKD3-208	ENST00000475912	ZFP91	Q96JP5	570 aa	Predicted RBP	13.73	□□□□□ -0.21
PRKD3-208	ENST00000475912	GOLGA2	Q08379	1002 aa		13.71	□□□□□ -0.21
PRKD3-208	ENST00000475912	IER5L	Q5T953	404 aa		13.71	□□□□□ -0.21
PRKD3-208	ENST00000475912	CABP2	Q9NPB3	220 aa		13.71	□□□□□ -0.21
PRKD3-208	ENST00000475912	POTEF	A5A3E0	1075 aa		13.69	□□□□□ -0.22
PRKD3-208	ENST00000475912	POTEB2	H3BUK9	544 aa		13.69	□□□□□ -0.22
PRKD3-208	ENST00000475912	TAOK2	Q9UL54	1235 aa		13.69	□□□□□ -0.22
PRKD3-208	ENST00000475912	COLQ	Q9Y215	455 aa	Predicted RBP	13.68	□□□□□ -0.22
PRKD3-208	ENST00000475912	SEC24B	O95487	1268 aa		13.67	□□□□□ -0.22
PRKD3-208	ENST00000475912	MKRN3	Q13064	507 aa	Known RBP	13.66	□□□□□ -0.22
PRKD3-208	ENST00000475912	IRX5	P78411	483 aa	Predicted RBP	13.63	□□□□□ -0.23
PRKD3-208	ENST00000475912	AMER1	Q5JTC6	1135 aa	Predicted RBP	13.63	□□□□□ -0.23
PRKD3-208	ENST00000475912	BCL11B	Q9C0K0	894 aa	Predicted RBP	13.63	□□□□□ -0.23
PRKD3-208	ENST00000475912	STK25	O00506	426 aa		13.62	□□□□□ -0.23
PRKD3-208	ENST00000475912	RTN4	Q9NQC3	1192 aa	Known RBP	13.62	□□□□□ -0.23
PRKD3-208	ENST00000475912	POTEM	A6NI47	508 aa		13.61	□□□□□ -0.23
PRKD3-208	ENST00000475912	PLCG2	P16885	1265 aa		13.61	□□□□□ -0.23
PRKD3-208	ENST00000475912	STK24	Q9Y6E0	443 aa		13.61	□□□□□ -0.23
PRKD3-208	ENST00000475912	EFCAB3	Q8N7B9	438 aa		13.6	□□□□□ -0.23
PRKD3-208	ENST00000475912	OCEL1	Q9H607	264 aa		13.58	□□□□□ -0.24
PRKD3-208	ENST00000475912	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	13.57	□□□□□ -0.24	2e-7	■■■■■ 28.3
PRKD3-208	ENST00000475912	POTEG	Q6S5H5	508 aa		13.56	□□□□□ -0.24
PRKD3-208	ENST00000475912	POTEJ	P0CG39	1038 aa		13.55	□□□□□ -0.24
PRKD3-208	ENST00000475912	PDCD7	Q8N8D1	485 aa	Known RBP	13.54	□□□□□ -0.24
PRKD3-208	ENST00000475912	DCAF8L2	P0C7V8	631 aa		13.52	□□□□□ -0.25
PRKD3-208	ENST00000475912	CHGA	P10645	457 aa	Known RBP	13.5	□□□□□ -0.25
PRKD3-208	ENST00000475912	ILDR1	Q86SU0	546 aa	Predicted RBP	13.5	□□□□□ -0.25
PRKD3-208	ENST00000475912	HS6ST3	Q8IZP7	471 aa		13.49	□□□□□ -0.25
PRKD3-208	ENST00000475912	SOX12	O15370	315 aa		13.48	□□□□□ -0.25
PRKD3-208	ENST00000475912	MAMSTR	Q6ZN01	415 aa		13.48	□□□□□ -0.25
PRKD3-208	ENST00000475912	PCDH10	Q9P2E7	1040 aa		13.48	□□□□□ -0.25
PRKD3-208	ENST00000475912	PHF8	Q9UPP1	1060 aa		13.47	□□□□□ -0.25
PRKD3-208	ENST00000475912	DPY19L2	Q6NUT2	758 aa		13.46	□□□□□ -0.25
PRKD3-208	ENST00000475912	MFRP	Q9BY79	579 aa		13.42	□□□□□ -0.26
PRKD3-208	ENST00000475912	MS4A4A	Q96JQ5	239 aa		13.41	□□□□□ -0.26
PRKD3-208	ENST00000475912	SCUBE2	Q9NQ36	999 aa		13.41	□□□□□ -0.26
PRKD3-208	ENST00000475912	NLRP6	P59044	892 aa		13.4	□□□□□ -0.26
PRKD3-208	ENST00000475912	FBXO22	Q8NEZ5	403 aa		13.39	□□□□□ -0.27
PRKD3-208	ENST00000475912	L3MBTL3	Q96JM7	780 aa	Predicted RBP	13.38	□□□□□ -0.27
PRKD3-208	ENST00000475912	BOLA1	Q9Y3E2	137 aa		13.34	□□□□□ -0.27
PRKD3-208	ENST00000475912	NKX1-1	Q15270	411 aa	Predicted RBP	13.33	□□□□□ -0.28
PRKD3-208	ENST00000475912		G3V3G9	751 aa		13.32	□□□□□ -0.28
PRKD3-208	ENST00000475912	DNAJC5	Q9H3Z4	198 aa		13.32	□□□□□ -0.28
PRKD3-208	ENST00000475912	C3orf67	Q6ZVT6	689 aa		13.3	□□□□□ -0.28
PRKD3-208	ENST00000475912	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	13.29	□□□□□ -0.28
PRKD3-208	ENST00000475912	LCE2D	Q5TA82	110 aa	Predicted RBP	13.28	□□□□□ -0.28
PRKD3-208	ENST00000475912	MICALL2	Q8IY33	904 aa		13.27	□□□□□ -0.29
PRKD3-208	ENST00000475912	SLAIN1	Q8ND83	568 aa		13.27	□□□□□ -0.29
PRKD3-208	ENST00000475912	FAM163A	Q96GL9	167 aa	Predicted RBP	13.26	□□□□□ -0.29
PRKD3-208	ENST00000475912	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	13.26	□□□□□ -0.29
PRKD3-208	ENST00000475912	PPP1R37	O75864	691 aa		13.23	□□□□□ -0.29
PRKD3-208	ENST00000475912	GTPBP6	O43824	516 aa	Predicted RBP	13.16	□□□□□ -0.3
PRKD3-208	ENST00000475912	RYDEN	Q9NUL5	291 aa	Known RBP	13.16	□□□□□ -0.3
PRKD3-208	ENST00000475912	BBX	Q8WY36	941 aa	Predicted RBP	13.15	□□□□□ -0.3

Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms