RNA–Protein interactions for RNA: ENST00000474157.1

GPNMB-209, Transcript of glycoprotein nmb, humanhuman

TSL 4

Gene GPNMB, Length 513 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-209ENST00000474157 CHADLQ6NUI6 762 aa12.75□□□□□ -0.37
GPNMB-209ENST00000474157 RASEFQ8IZ41 740 aa12.74□□□□□ -0.37
GPNMB-209ENST00000474157 BBXQ8WY36 941 aaPredicted RBP12.72□□□□□ -0.37
GPNMB-209ENST00000474157 RNF25Q96BH1 459 aaPredicted RBP12.69□□□□□ -0.38
GPNMB-209ENST00000474157 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.69□□□□□ -0.38
GPNMB-209ENST00000474157 HAP1P54257 671 aaPredicted RBP12.68□□□□□ -0.38
GPNMB-209ENST00000474157 CHGAP10645 457 aaKnown RBP12.67□□□□□ -0.38
GPNMB-209ENST00000474157 PRKAR2AP13861 404 aaKnown RBP12.64□□□□□ -0.39
GPNMB-209ENST00000474157 FARP1Q9Y4F1 1045 aaPredicted RBP12.64□□□□□ -0.39
GPNMB-209ENST00000474157 RIOK3O14730 519 aaKnown RBP12.62□□□□□ -0.39
GPNMB-209ENST00000474157 PAXIP1Q6ZW49 1069 aaPredicted RBP12.62□□□□□ -0.39
GPNMB-209ENST00000474157 FXR2P51116 673 aaKnown RBP eCLIP12.61□□□□□ -0.39
GPNMB-209ENST00000474157 PYGBP11216 843 aa12.59□□□□□ -0.39
GPNMB-209ENST00000474157 CHRM1P11229 460 aaPredicted RBP12.59□□□□□ -0.39
GPNMB-209ENST00000474157 CHRDL2Q6WN34 429 aa12.59□□□□□ -0.39
GPNMB-209ENST00000474157 HS6ST3Q8IZP7 471 aa12.59□□□□□ -0.39
GPNMB-209ENST00000474157 CFAP44Q96MT7 982 aa12.59□□□□□ -0.39
GPNMB-209ENST00000474157 TSPYL2Q9H2G4 693 aaPredicted RBP12.58□□□□□ -0.4
GPNMB-209ENST00000474157 CCDC180Q9P1Z9 1646 aa12.58□□□□□ -0.4
GPNMB-209ENST00000474157 TAOK2Q9UL54 1235 aa12.57□□□□□ -0.4
GPNMB-209ENST00000474157 DNAJC5Q9H3Z4 198 aa12.54□□□□□ -0.4
GPNMB-209ENST00000474157 SPRYD3Q8NCJ5 442 aa12.53□□□□□ -0.4
GPNMB-209ENST00000474157 VGFO15240 615 aaPredicted RBP12.52□□□□□ -0.41
GPNMB-209ENST00000474157 PIP4P2Q8N4L2 257 aa12.52□□□□□ -0.41
GPNMB-209ENST00000474157 STK25O00506 426 aa12.49□□□□□ -0.41
GPNMB-209ENST00000474157 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.45□□□□□ -0.42
GPNMB-209ENST00000474157 ZFP91Q96JP5 570 aaPredicted RBP12.45□□□□□ -0.42
GPNMB-209ENST00000474157 VSIG10Q8N0Z9 540 aa12.44□□□□□ -0.42
GPNMB-209ENST00000474157 SGIP1Q9BQI5 828 aa12.44□□□□□ -0.42
GPNMB-209ENST00000474157 CCDC61Q9Y6R9 512 aa12.44□□□□□ -0.42
GPNMB-209ENST00000474157 NKX1-1Q15270 411 aaPredicted RBP12.43□□□□□ -0.42
GPNMB-209ENST00000474157 PAK3O75914 559 aaPredicted RBP12.42□□□□□ -0.42
GPNMB-209ENST00000474157 BCL11BQ9C0K0 894 aaPredicted RBP12.42□□□□□ -0.42
GPNMB-209ENST00000474157 STK24Q9Y6E0 443 aa12.42□□□□□ -0.42
GPNMB-209ENST00000474157 ZNF467Q7Z7K2 595 aaPredicted RBP12.41□□□□□ -0.42
GPNMB-209ENST00000474157 TSHZ2Q9NRE2 1034 aa12.39□□□□□ -0.43
GPNMB-209ENST00000474157 PCDHB8Q9UN66 801 aa12.37□□□□□ -0.43
GPNMB-209ENST00000474157 PCDHB13Q9Y5F0 798 aa12.37□□□□□ -0.43
GPNMB-209ENST00000474157 RB1CC1Q8TDY2 1594 aa12.37□□□□□ -0.43
GPNMB-209ENST00000474157 KDM2AQ9Y2K7 1162 aa12.35□□□□□ -0.43
GPNMB-209ENST00000474157 GTPBP6O43824 516 aaPredicted RBP12.33□□□□□ -0.44
GPNMB-209ENST00000474157 PDAP1Q13442 181 aaKnown RBP12.33□□□□□ -0.44
GPNMB-209ENST00000474157 ZNF579Q8NAF0 562 aaKnown RBP12.32□□□□□ -0.44
GPNMB-209ENST00000474157 CD44P16070 742 aaKnown RBP12.31□□□□□ -0.44
GPNMB-209ENST00000474157 ZRANB1Q9UGI0 708 aa12.3□□□□□ -0.44
GPNMB-209ENST00000474157 MAP3K13O43283 966 aa12.28□□□□□ -0.44
GPNMB-209ENST00000474157 PSEN1P49768 467 aa12.28□□□□□ -0.44
GPNMB-209ENST00000474157 IFNL1Q8IU54 200 aa12.28□□□□□ -0.44
GPNMB-209ENST00000474157 KIF12Q96FN5 646 aa12.28□□□□□ -0.44
GPNMB-209ENST00000474157 PHF12Q96QT6 1004 aa12.24□□□□□ -0.45
GPNMB-209ENST00000474157 RYDENQ9NUL5 291 aaKnown RBP12.24□□□□□ -0.45
GPNMB-209ENST00000474157 BCANQ96GW7 911 aa12.2□□□□□ -0.46
GPNMB-209ENST00000474157 C19orf67A6NJJ6 358 aa12.17□□□□□ -0.46
GPNMB-209ENST00000474157 NACADO15069 1562 aa12.15□□□□□ -0.46
GPNMB-209ENST00000474157 CABP2Q9NPB3 220 aa12.14□□□□□ -0.47
GPNMB-209ENST00000474157 MFRPQ9BY79 579 aa12.13□□□□□ -0.47
GPNMB-209ENST00000474157 EFCAB3Q8N7B9 438 aa12.11□□□□□ -0.47
GPNMB-209ENST00000474157 MS4A3Q96HJ5 214 aa12.1□□□□□ -0.47
GPNMB-209ENST00000474157 CECR2Q9BXF3 1484 aa12.09□□□□□ -0.47
GPNMB-209ENST00000474157 TRPC6Q9Y210 931 aa12.07□□□□□ -0.48
GPNMB-209ENST00000474157 ERICH6Q7L0X2 663 aa12.06□□□□□ -0.48
GPNMB-209ENST00000474157 SOX12O15370 315 aa12.04□□□□□ -0.48
GPNMB-209ENST00000474157 NLRP6P59044 892 aa12.04□□□□□ -0.48
GPNMB-209ENST00000474157 TMEM106CQ9BVX2 250 aa12.04□□□□□ -0.48
GPNMB-209ENST00000474157 PHF8Q9UPP1 1060 aa12.04□□□□□ -0.48
GPNMB-209ENST00000474157 FBXO22Q8NEZ5 403 aa12.03□□□□□ -0.48
GPNMB-209ENST00000474157 HAX1O00165 279 aa12.01□□□□□ -0.49
GPNMB-209ENST00000474157 GOLGA2Q08379 1002 aa12□□□□□ -0.49
GPNMB-209ENST00000474157 CADPS2Q86UW7 1296 aa12□□□□□ -0.49
GPNMB-209ENST00000474157 PPP1R37O75864 691 aa11.99□□□□□ -0.49
GPNMB-209ENST00000474157 BICRAQ9NZM4 1560 aa11.98□□□□□ -0.49
GPNMB-209ENST00000474157 TIE1P35590 1138 aa11.96□□□□□ -0.49
GPNMB-209ENST00000474157 NBR1Q14596 966 aa11.96□□□□□ -0.49
GPNMB-209ENST00000474157 EVX2Q03828 476 aa11.95□□□□□ -0.5
GPNMB-209ENST00000474157 TTLL13PA6NNM8 815 aa11.94□□□□□ -0.5
GPNMB-209ENST00000474157 GALR2O43603 387 aaPredicted RBP11.94□□□□□ -0.5
GPNMB-209ENST00000474157 CC2D2AQ9P2K1 1620 aa11.93□□□□□ -0.5
GPNMB-209ENST00000474157 MKRN3Q13064 507 aaKnown RBP11.93□□□□□ -0.5
GPNMB-209ENST00000474157 MS4A4AQ96JQ5 239 aa11.93□□□□□ -0.5
GPNMB-209ENST00000474157 BMP2KQ9NSY1 1161 aaPredicted RBP11.92□□□□□ -0.5
GPNMB-209ENST00000474157 WDR70Q9NW82 654 aa11.89□□□□□ -0.51
GPNMB-209ENST00000474157 CLCN6P51797 869 aa11.87□□□□□ -0.51
GPNMB-209ENST00000474157 TRIM35Q9UPQ4 493 aa11.87□□□□□ -0.51
GPNMB-209ENST00000474157 UNC13AQ9UPW8 1703 aa11.86□□□□□ -0.51
GPNMB-209ENST00000474157 PRKCSHP14314 528 aaPredicted RBP11.86□□□□□ -0.51
GPNMB-209ENST00000474157 P3H3Q8IVL6 736 aa11.85□□□□□ -0.51
GPNMB-209ENST00000474157 SHROOM4Q9ULL8 1493 aa11.83□□□□□ -0.52
GPNMB-209ENST00000474157 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.83□□□□□ -0.52
GPNMB-209ENST00000474157 KCNV2Q8TDN2 545 aa11.82□□□□□ -0.52
GPNMB-209ENST00000474157 TPRNQ4KMQ1 711 aa11.81□□□□□ -0.52
GPNMB-209ENST00000474157 MYO15BQ96JP2 1530 aa11.8□□□□□ -0.52
GPNMB-209ENST00000474157 ATN1P54259 1190 aaPredicted RBP11.79□□□□□ -0.52
GPNMB-209ENST00000474157 ILDR1Q86SU0 546 aaPredicted RBP11.79□□□□□ -0.52
GPNMB-209ENST00000474157 NCKAP5LQ9HCH0 1330 aa11.78□□□□□ -0.52
GPNMB-209ENST00000474157 EIF4G1Q04637 1599 aaKnown RBP11.77□□□□□ -0.53
GPNMB-209ENST00000474157 ATMINO43313 823 aaPredicted RBP11.76□□□□□ -0.53
GPNMB-209ENST00000474157 ASTLQ6HA08 431 aaPredicted RBP11.75□□□□□ -0.53
GPNMB-209ENST00000474157 LARP6Q9BRS8 491 aaKnown RBP11.75□□□□□ -0.53
GPNMB-209ENST00000474157 CUX2O14529 1486 aa11.75□□□□□ -0.53
GPNMB-209ENST00000474157 PDE4AP27815 886 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms