RNA–Protein interactions for RNA: ENST00000471701.1

PRPF40A-207, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 293 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-207ENST00000471701 VASPP50552 380 aaPredicted RBP11.68□□□□□ -0.54
PRPF40A-207ENST00000471701 CCDC61Q9Y6R9 512 aa11.66□□□□□ -0.54
PRPF40A-207ENST00000471701 NUBP1P53384 320 aa11.64□□□□□ -0.55
PRPF40A-207ENST00000471701 POTEIP0CG38 1075 aa11.62□□□□□ -0.55
PRPF40A-207ENST00000471701 FAM212AQ96EL1 285 aa11.62□□□□□ -0.55
PRPF40A-207ENST00000471701 DCAF8Q5TAQ9 597 aa11.6□□□□□ -0.55
PRPF40A-207ENST00000471701 KIF12Q96FN5 646 aa11.59□□□□□ -0.55
PRPF40A-207ENST00000471701 MS4A3Q96HJ5 214 aa11.59□□□□□ -0.55
PRPF40A-207ENST00000471701 MAP3K13O43283 966 aa11.55□□□□□ -0.56
PRPF40A-207ENST00000471701 LHX8Q68G74 356 aa11.51□□□□□ -0.57
PRPF40A-207ENST00000471701 SGIP1Q9BQI5 828 aa11.5□□□□□ -0.57
PRPF40A-207ENST00000471701 GSE1Q14687 1217 aa11.49□□□□□ -0.57
PRPF40A-207ENST00000471701 IFNLR1Q8IU57 520 aaPredicted RBP11.49□□□□□ -0.57
PRPF40A-207ENST00000471701 PCDHB13Q9Y5F0 798 aa11.49□□□□□ -0.57
PRPF40A-207ENST00000471701 SPOCK2Q92563 424 aa11.47□□□□□ -0.57
PRPF40A-207ENST00000471701 ATMINO43313 823 aaPredicted RBP11.46□□□□□ -0.57
PRPF40A-207ENST00000471701 ASTLQ6HA08 431 aaPredicted RBP11.46□□□□□ -0.57
PRPF40A-207ENST00000471701 PYGBP11216 843 aa11.44□□□□□ -0.58
PRPF40A-207ENST00000471701 TIE1P35590 1138 aa11.42□□□□□ -0.58
PRPF40A-207ENST00000471701 PELP1Q8IZL8 1130 aaKnown RBP11.42□□□□□ -0.58
PRPF40A-207ENST00000471701 C7P10643 843 aa11.4□□□□□ -0.58
PRPF40A-207ENST00000471701 IFNL1Q8IU54 200 aa11.4□□□□□ -0.58
PRPF40A-207ENST00000471701 SLC39A7Q92504 469 aa11.4□□□□□ -0.58
PRPF40A-207ENST00000471701 CIZ1Q9ULV3 898 aaPredicted RBP11.4□□□□□ -0.58
PRPF40A-207ENST00000471701 TRPC6Q9Y210 931 aa11.4□□□□□ -0.58
PRPF40A-207ENST00000471701 ATN1P54259 1190 aaPredicted RBP11.39□□□□□ -0.59
PRPF40A-207ENST00000471701 BMP2KQ9NSY1 1161 aaPredicted RBP11.39□□□□□ -0.59
PRPF40A-207ENST00000471701 METRNQ9UJH8 293 aa11.35□□□□□ -0.59
PRPF40A-207ENST00000471701 TTLL13PA6NNM8 815 aa11.34□□□□□ -0.59
PRPF40A-207ENST00000471701 CHRM1P11229 460 aaPredicted RBP11.33□□□□□ -0.6
PRPF40A-207ENST00000471701 PCDHB8Q9UN66 801 aa11.32□□□□□ -0.6
PRPF40A-207ENST00000471701 TMEM106CQ9BVX2 250 aa11.31□□□□□ -0.6
PRPF40A-207ENST00000471701 ZNF467Q7Z7K2 595 aaPredicted RBP11.3□□□□□ -0.6
PRPF40A-207ENST00000471701 TRIM35Q9UPQ4 493 aa11.29□□□□□ -0.6
PRPF40A-207ENST00000471701 SEC24BO95487 1268 aa11.27□□□□□ -0.61
PRPF40A-207ENST00000471701 POTEB2H3BUK9 544 aa11.25□□□□□ -0.61
PRPF40A-207ENST00000471701 TRIM41Q8WV44 630 aa11.24□□□□□ -0.61
PRPF40A-207ENST00000471701 IER5LQ5T953 404 aa11.23□□□□□ -0.61
PRPF40A-207ENST00000471701 MAMSTRQ6ZN01 415 aa11.2□□□□□ -0.62
PRPF40A-207ENST00000471701 GOLGA2Q08379 1002 aa11.19□□□□□ -0.62
PRPF40A-207ENST00000471701 PSEN1P49768 467 aa11.18□□□□□ -0.62
PRPF40A-207ENST00000471701 OTUD5Q96G74 571 aa11.18□□□□□ -0.62
PRPF40A-207ENST00000471701 POTEFA5A3E0 1075 aa11.16□□□□□ -0.62
PRPF40A-207ENST00000471701 PDAP1Q13442 181 aaKnown RBP11.16□□□□□ -0.62
PRPF40A-207ENST00000471701 COLQQ9Y215 455 aaPredicted RBP11.16□□□□□ -0.62
PRPF40A-207ENST00000471701 PLCG2P16885 1265 aa11.15□□□□□ -0.62
PRPF40A-207ENST00000471701 MKRN3Q13064 507 aaKnown RBP11.14□□□□□ -0.63
PRPF40A-207ENST00000471701 SCUBE2Q9NQ36 999 aa11.14□□□□□ -0.63
PRPF40A-207ENST00000471701 POTEJP0CG39 1038 aa11.12□□□□□ -0.63
PRPF40A-207ENST00000471701 OCEL1Q9H607 264 aa11.11□□□□□ -0.63
PRPF40A-207ENST00000471701 IRX5P78411 483 aaPredicted RBP11.09□□□□□ -0.63
PRPF40A-207ENST00000471701 RIOK3O14730 519 aaKnown RBP11.05□□□□□ -0.64
PRPF40A-207ENST00000471701 CABP2Q9NPB3 220 aa11.05□□□□□ -0.64
PRPF40A-207ENST00000471701 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.03□□□□□ -0.643e-9■■■■□ 26.3
PRPF40A-207ENST00000471701 TAOK2Q9UL54 1235 aa11.02□□□□□ -0.65
PRPF40A-207ENST00000471701 ECM2O94769 699 aaPredicted RBP11.01□□□□□ -0.65
PRPF40A-207ENST00000471701 VGFO15240 615 aaPredicted RBP11□□□□□ -0.65
PRPF40A-207ENST00000471701 L3MBTL3Q96JM7 780 aaPredicted RBP10.98□□□□□ -0.65
PRPF40A-207ENST00000471701 RNF25Q96BH1 459 aaPredicted RBP10.96□□□□□ -0.65
PRPF40A-207ENST00000471701 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.95□□□□□ -0.66
PRPF40A-207ENST00000471701 SLAIN1Q8ND83 568 aa10.95□□□□□ -0.66
PRPF40A-207ENST00000471701 ZFP91Q96JP5 570 aaPredicted RBP10.95□□□□□ -0.66
PRPF40A-207ENST00000471701 PDCD7Q8N8D1 485 aaKnown RBP10.94□□□□□ -0.66
PRPF40A-207ENST00000471701 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.94□□□□□ -0.66
PRPF40A-207ENST00000471701 G3V3G9 751 aa10.93□□□□□ -0.66
PRPF40A-207ENST00000471701 EFCAB3Q8N7B9 438 aa10.93□□□□□ -0.66
PRPF40A-207ENST00000471701 PKD2Q13563 968 aa10.92□□□□□ -0.66
PRPF40A-207ENST00000471701 FAM163AQ96GL9 167 aaPredicted RBP10.92□□□□□ -0.66
PRPF40A-207ENST00000471701 C3orf67Q6ZVT6 689 aa10.89□□□□□ -0.67
PRPF40A-207ENST00000471701 SOX12O15370 315 aa10.88□□□□□ -0.67
PRPF40A-207ENST00000471701 ILDR1Q86SU0 546 aaPredicted RBP10.88□□□□□ -0.67
PRPF40A-207ENST00000471701 DPY19L2Q6NUT2 758 aa10.87□□□□□ -0.67
PRPF40A-207ENST00000471701 BCL11BQ9C0K0 894 aaPredicted RBP10.86□□□□□ -0.67
PRPF40A-207ENST00000471701 STK24Q9Y6E0 443 aa10.86□□□□□ -0.67
PRPF40A-207ENST00000471701 RGL2O15211 777 aa10.85□□□□□ -0.67
PRPF40A-207ENST00000471701 STK25O00506 426 aa10.84□□□□□ -0.67
PRPF40A-207ENST00000471701 BOLA1Q9Y3E2 137 aa10.84□□□□□ -0.67
PRPF40A-207ENST00000471701 SNPHO15079 494 aa10.81□□□□□ -0.68
PRPF40A-207ENST00000471701 POTEMA6NI47 508 aa10.79□□□□□ -0.68
PRPF40A-207ENST00000471701 NLRP6P59044 892 aa10.79□□□□□ -0.68
PRPF40A-207ENST00000471701 PHF8Q9UPP1 1060 aa10.79□□□□□ -0.68
PRPF40A-207ENST00000471701 POTEGQ6S5H5 508 aa10.78□□□□□ -0.68
PRPF40A-207ENST00000471701 TMEM121BQ9BXQ6 578 aaPredicted RBP10.73□□□□□ -0.69
PRPF40A-207ENST00000471701 ST18O60284 1047 aa10.71□□□□□ -0.69
PRPF40A-207ENST00000471701 MS4A4AQ96JQ5 239 aa10.71□□□□□ -0.69
PRPF40A-207ENST00000471701 LCE2DQ5TA82 110 aaPredicted RBP10.7□□□□□ -0.7
PRPF40A-207ENST00000471701 MICALL2Q8IY33 904 aa10.69□□□□□ -0.7
PRPF40A-207ENST00000471701 MFRPQ9BY79 579 aa10.68□□□□□ -0.7
PRPF40A-207ENST00000471701 PCDH10Q9P2E7 1040 aa10.68□□□□□ -0.7
PRPF40A-207ENST00000471701 FBXO22Q8NEZ5 403 aa10.67□□□□□ -0.7
PRPF40A-207ENST00000471701 CHGAP10645 457 aaKnown RBP10.65□□□□□ -0.7
PRPF40A-207ENST00000471701 HS6ST3Q8IZP7 471 aa10.63□□□□□ -0.71
PRPF40A-207ENST00000471701 ZNF710Q8N1W2 664 aa10.6□□□□□ -0.71
PRPF40A-207ENST00000471701 DOK7Q18PE1 504 aa10.59□□□□□ -0.71
PRPF40A-207ENST00000471701 DCAF8L2P0C7V8 631 aa10.58□□□□□ -0.72
PRPF40A-207ENST00000471701 RIMBP2O15034 1052 aa10.57□□□□□ -0.72
PRPF40A-207ENST00000471701 MARVELD3Q96A59 401 aa10.57□□□□□ -0.72
PRPF40A-207ENST00000471701 PLSCR2Q9NRY7 297 aa10.57□□□□□ -0.72
PRPF40A-207ENST00000471701 TMEM92Q6UXU6 159 aa10.56□□□□□ -0.72
PRPF40A-207ENST00000471701 CDAN1Q8IWY9 1227 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms