RNA–Protein interactions for RNA: ENST00000471245.1

CKS1B-204, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 1 (best)

Gene CKS1B, Length 1,166 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-204ENST00000471245 RASEFQ8IZ41 740 aa13.23□□□□□ -0.29
CKS1B-204ENST00000471245 FAM212AQ96EL1 285 aa13.23□□□□□ -0.29
CKS1B-204ENST00000471245 TRIM41Q8WV44 630 aa13.21□□□□□ -0.29
CKS1B-204ENST00000471245 ECM2O94769 699 aaPredicted RBP13.2□□□□□ -0.3
CKS1B-204ENST00000471245 DCAF8Q5TAQ9 597 aa13.19□□□□□ -0.3
CKS1B-204ENST00000471245 CIZ1Q9ULV3 898 aaPredicted RBP13.17□□□□□ -0.3
CKS1B-204ENST00000471245 C19orf67A6NJJ6 358 aa13.16□□□□□ -0.3
CKS1B-204ENST00000471245 PAK3O75914 559 aaPredicted RBP13.15□□□□□ -0.3
CKS1B-204ENST00000471245 CHRM1P11229 460 aaPredicted RBP13.14□□□□□ -0.31
CKS1B-204ENST00000471245 CD44P16070 742 aaKnown RBP13.1□□□□□ -0.31
CKS1B-204ENST00000471245 TSPYL2Q9H2G4 693 aaPredicted RBP13.1□□□□□ -0.31
CKS1B-204ENST00000471245 GABBR2O75899 941 aa13.08□□□□□ -0.32
CKS1B-204ENST00000471245 CCDC61Q9Y6R9 512 aa13.08□□□□□ -0.32
CKS1B-204ENST00000471245 HAP1P54257 671 aaPredicted RBP13.07□□□□□ -0.32
CKS1B-204ENST00000471245 BBXQ8WY36 941 aaPredicted RBP13.07□□□□□ -0.32
CKS1B-204ENST00000471245 RGL2O15211 777 aa13.05□□□□□ -0.32
CKS1B-204ENST00000471245 PLSCR2Q9NRY7 297 aa13.04□□□□□ -0.32
CKS1B-204ENST00000471245 ZRANB1Q9UGI0 708 aa13.04□□□□□ -0.32
CKS1B-204ENST00000471245 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.03□□□□□ -0.32
CKS1B-204ENST00000471245 SGIP1Q9BQI5 828 aa13.01□□□□□ -0.33
CKS1B-204ENST00000471245 CLCN6P51797 869 aa13□□□□□ -0.33
CKS1B-204ENST00000471245 ZNF579Q8NAF0 562 aaKnown RBP13□□□□□ -0.33
CKS1B-204ENST00000471245 PYGBP11216 843 aa12.97□□□□□ -0.33
CKS1B-204ENST00000471245 KIF12Q96FN5 646 aa12.95□□□□□ -0.34
CKS1B-204ENST00000471245 VSIG10Q8N0Z9 540 aa12.94□□□□□ -0.34
CKS1B-204ENST00000471245 TAOK2Q9UL54 1235 aa12.93□□□□□ -0.34
CKS1B-204ENST00000471245 ZNF467Q7Z7K2 595 aaPredicted RBP12.91□□□□□ -0.34
CKS1B-204ENST00000471245 RIOK3O14730 519 aaKnown RBP12.9□□□□□ -0.34
CKS1B-204ENST00000471245 RNF25Q96BH1 459 aaPredicted RBP12.89□□□□□ -0.35
CKS1B-204ENST00000471245 PAXIP1Q6ZW49 1069 aaPredicted RBP12.88□□□□□ -0.35
CKS1B-204ENST00000471245 MAP3K13O43283 966 aa12.87□□□□□ -0.35
CKS1B-204ENST00000471245 PHF12Q96QT6 1004 aa12.87□□□□□ -0.35
CKS1B-204ENST00000471245 PCDHB13Q9Y5F0 798 aa12.86□□□□□ -0.35
CKS1B-204ENST00000471245 VGFO15240 615 aaPredicted RBP12.84□□□□□ -0.35
CKS1B-204ENST00000471245 CHGAP10645 457 aaKnown RBP12.84□□□□□ -0.35
CKS1B-204ENST00000471245 CFAP44Q96MT7 982 aa12.84□□□□□ -0.35
CKS1B-204ENST00000471245 SPRYD3Q8NCJ5 442 aa12.83□□□□□ -0.36
CKS1B-204ENST00000471245 HS6ST3Q8IZP7 471 aa12.82□□□□□ -0.36
CKS1B-204ENST00000471245 IFNL1Q8IU54 200 aa12.81□□□□□ -0.36
CKS1B-204ENST00000471245 POTEIP0CG38 1075 aa12.8□□□□□ -0.36
CKS1B-204ENST00000471245 BCANQ96GW7 911 aa12.79□□□□□ -0.36
CKS1B-204ENST00000471245 PDAP1Q13442 181 aaKnown RBP12.78□□□□□ -0.36
CKS1B-204ENST00000471245 DNAJC5Q9H3Z4 198 aa12.78□□□□□ -0.36
CKS1B-204ENST00000471245 PCDHB8Q9UN66 801 aa12.78□□□□□ -0.36
CKS1B-204ENST00000471245 MS4A3Q96HJ5 214 aa12.76□□□□□ -0.37
CKS1B-204ENST00000471245 KDM2AQ9Y2K7 1162 aa12.74□□□□□ -0.37
CKS1B-204ENST00000471245 PSEN1P49768 467 aa12.72□□□□□ -0.37
CKS1B-204ENST00000471245 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.7□□□□□ -0.38
CKS1B-204ENST00000471245 GALR2O43603 387 aaPredicted RBP12.7□□□□□ -0.38
CKS1B-204ENST00000471245 TIE1P35590 1138 aa12.7□□□□□ -0.38
CKS1B-204ENST00000471245 ZFP91Q96JP5 570 aaPredicted RBP12.7□□□□□ -0.38
CKS1B-204ENST00000471245 STK25O00506 426 aa12.66□□□□□ -0.38
CKS1B-204ENST00000471245 TSHZ2Q9NRE2 1034 aa12.66□□□□□ -0.38
CKS1B-204ENST00000471245 DCBLD2Q96PD2 775 aa12.63□□□□□ -0.39
CKS1B-204ENST00000471245 BCL11BQ9C0K0 894 aaPredicted RBP12.63□□□□□ -0.39
CKS1B-204ENST00000471245 TMEM106CQ9BVX2 250 aa12.61□□□□□ -0.39
CKS1B-204ENST00000471245 TRPC6Q9Y210 931 aa12.61□□□□□ -0.39
CKS1B-204ENST00000471245 STK24Q9Y6E0 443 aa12.61□□□□□ -0.39
CKS1B-204ENST00000471245 TTLL13PA6NNM8 815 aa12.59□□□□□ -0.39
CKS1B-204ENST00000471245 BMP2KQ9NSY1 1161 aaPredicted RBP12.59□□□□□ -0.39
CKS1B-204ENST00000471245 NKX1-1Q15270 411 aaPredicted RBP12.58□□□□□ -0.4
CKS1B-204ENST00000471245 ASTLQ6HA08 431 aaPredicted RBP12.58□□□□□ -0.4
CKS1B-204ENST00000471245 ATMINO43313 823 aaPredicted RBP12.55□□□□□ -0.4
CKS1B-204ENST00000471245 SOX12O15370 315 aa12.53□□□□□ -0.4
CKS1B-204ENST00000471245 GTPBP6O43824 516 aaPredicted RBP12.53□□□□□ -0.4
CKS1B-204ENST00000471245 CABP2Q9NPB3 220 aa12.51□□□□□ -0.41
CKS1B-204ENST00000471245 RYDENQ9NUL5 291 aaKnown RBP12.51□□□□□ -0.41
CKS1B-204ENST00000471245 POTEMA6NI47 508 aa12.5□□□□□ -0.41
CKS1B-204ENST00000471245 ATN1P54259 1190 aaPredicted RBP12.49□□□□□ -0.41
CKS1B-204ENST00000471245 GOLGA2Q08379 1002 aa12.49□□□□□ -0.41
CKS1B-204ENST00000471245 PCDH10Q9P2E7 1040 aa12.49□□□□□ -0.41
CKS1B-204ENST00000471245 TRIM35Q9UPQ4 493 aa12.49□□□□□ -0.41
CKS1B-204ENST00000471245 IER5LQ5T953 404 aa12.48□□□□□ -0.41
CKS1B-204ENST00000471245 EFCAB3Q8N7B9 438 aa12.48□□□□□ -0.41
CKS1B-204ENST00000471245 MKRN3Q13064 507 aaKnown RBP12.47□□□□□ -0.41
CKS1B-204ENST00000471245 ILDR1Q86SU0 546 aaPredicted RBP12.45□□□□□ -0.42
CKS1B-204ENST00000471245 OTUD5Q96G74 571 aa12.45□□□□□ -0.42
CKS1B-204ENST00000471245 POTEGQ6S5H5 508 aa12.44□□□□□ -0.42
CKS1B-204ENST00000471245 NLRP6P59044 892 aa12.43□□□□□ -0.42
CKS1B-204ENST00000471245 MFRPQ9BY79 579 aa12.42□□□□□ -0.42
CKS1B-204ENST00000471245 C7P10643 843 aa12.4□□□□□ -0.42
CKS1B-204ENST00000471245 SLC39A7Q92504 469 aa12.4□□□□□ -0.42
CKS1B-204ENST00000471245 PELP1Q8IZL8 1130 aaKnown RBP12.39□□□□□ -0.43
CKS1B-204ENST00000471245 FBXO22Q8NEZ5 403 aa12.39□□□□□ -0.43
CKS1B-204ENST00000471245 POTEB2H3BUK9 544 aa12.38□□□□□ -0.43
CKS1B-204ENST00000471245 PRKCSHP14314 528 aaPredicted RBP12.37□□□□□ -0.43
CKS1B-204ENST00000471245 IRX5P78411 483 aaPredicted RBP12.36□□□□□ -0.43
CKS1B-204ENST00000471245 OCEL1Q9H607 264 aa12.36□□□□□ -0.43
CKS1B-204ENST00000471245 PHF8Q9UPP1 1060 aa12.36□□□□□ -0.43
CKS1B-204ENST00000471245 NBR1Q14596 966 aa12.35□□□□□ -0.43
CKS1B-204ENST00000471245 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.35□□□□□ -0.43
CKS1B-204ENST00000471245 TPRNQ4KMQ1 711 aa12.32□□□□□ -0.44
CKS1B-204ENST00000471245 MS4A4AQ96JQ5 239 aa12.3□□□□□ -0.44
CKS1B-204ENST00000471245 PDCD7Q8N8D1 485 aaKnown RBP12.29□□□□□ -0.44
CKS1B-204ENST00000471245 PLCG2P16885 1265 aa12.28□□□□□ -0.44
CKS1B-204ENST00000471245 METRNQ9UJH8 293 aa12.28□□□□□ -0.44
CKS1B-204ENST00000471245 SEC24BO95487 1268 aa12.27□□□□□ -0.45
CKS1B-204ENST00000471245 COLQQ9Y215 455 aaPredicted RBP12.24□□□□□ -0.45
CKS1B-204ENST00000471245 POTEFA5A3E0 1075 aa12.23□□□□□ -0.45
CKS1B-204ENST00000471245 L3MBTL3Q96JM7 780 aaPredicted RBP12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 175 ms