RNA–Protein interactions for RNA: ENST00000469535.5

CD46-212, Transcript of CD46 molecule, humanhuman

TSL 1 (best)

Gene CD46, Length 7,826 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD46-212ENST00000469535 DCAF1Q9Y4B6 1507 aa9.46□□□□□ -0.9
CD46-212ENST00000469535 PPM1GO15355 546 aaPredicted RBP9.46□□□□□ -0.9
CD46-212ENST00000469535 MLECQ14165 292 aa9.45□□□□□ -0.9
CD46-212ENST00000469535 ANP32BQ92688 251 aaKnown RBP9.45□□□□□ -0.9
CD46-212ENST00000469535 PLEKHD1A6NEE1 506 aa9.44□□□□□ -0.9
CD46-212ENST00000469535 RGL3Q3MIN7 710 aa9.44□□□□□ -0.9
CD46-212ENST00000469535 MYH16Q9H6N6 1097 aa9.44□□□□□ -0.9
CD46-212ENST00000469535 HNRNPUQ00839 825 aaKnown RBP eCLIP9.43□□□□□ -0.9
CD46-212ENST00000469535 GTF3C3Q9Y5Q9 886 aa9.43□□□□□ -0.9
CD46-212ENST00000469535 RRP7BPQ9NSQ0 103 aa9.43□□□□□ -0.9
CD46-212ENST00000469535 DDX10Q13206 875 aaKnown RBP9.42□□□□□ -0.9
CD46-212ENST00000469535 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.41□□□□□ -0.9
CD46-212ENST00000469535 MYO15BQ96JP2 1530 aa9.39□□□□□ -0.91
CD46-212ENST00000469535 TAOK2Q9UL54 1235 aa9.38□□□□□ -0.91
CD46-212ENST00000469535 POGKQ9P215 609 aa9.37□□□□□ -0.91
CD46-212ENST00000469535 HIRIP3Q9BW71 556 aaPredicted RBP9.36□□□□□ -0.91
CD46-212ENST00000469535 LAS1LQ9Y4W2 734 aaKnown RBP9.36□□□□□ -0.91
CD46-212ENST00000469535 FKBP8Q14318 412 aa9.36□□□□□ -0.91
CD46-212ENST00000469535 SOX12O15370 315 aa9.34□□□□□ -0.91
CD46-212ENST00000469535 MRS2Q9HD23 443 aa9.34□□□□□ -0.91
CD46-212ENST00000469535 SENP3-EIF4A1A0A087X0R7 540 aa9.33□□□□□ -0.92
CD46-212ENST00000469535 CFDP1Q9UEE9 299 aaPredicted RBP9.33□□□□□ -0.92
CD46-212ENST00000469535 CFAP53Q96M91 514 aa9.32□□□□□ -0.92
CD46-212ENST00000469535 TPRNQ4KMQ1 711 aa9.32□□□□□ -0.92
CD46-212ENST00000469535 CCDC136Q96JN2 1154 aa9.32□□□□□ -0.92
CD46-212ENST00000469535 NCBP3Q53F19 620 aaKnown RBP9.31□□□□□ -0.92
CD46-212ENST00000469535 TNNT2P45379 298 aaPredicted RBP9.31□□□□□ -0.92
CD46-212ENST00000469535 GOLGA2Q08379 1002 aa9.3□□□□□ -0.92
CD46-212ENST00000469535 CCDC9Q9Y3X0 531 aaKnown RBP9.3□□□□□ -0.92
CD46-212ENST00000469535 NEUROD2Q15784 382 aa9.3□□□□□ -0.92
CD46-212ENST00000469535 IRX6P78412 446 aaPredicted RBP9.27□□□□□ -0.93
CD46-212ENST00000469535 KNSTRNQ9Y448 316 aa9.27□□□□□ -0.93
CD46-212ENST00000469535 MAPK8IP3Q9UPT6 1336 aa9.27□□□□□ -0.93
CD46-212ENST00000469535 ISY1Q9ULR0 285 aaKnown RBP9.27□□□□□ -0.93
CD46-212ENST00000469535 RSF1Q96T23 1441 aaPredicted RBP9.27□□□□□ -0.93
CD46-212ENST00000469535 AEBP2Q6ZN18 517 aaPredicted RBP9.26□□□□□ -0.93
CD46-212ENST00000469535 EIF4G2P78344 907 aaKnown RBP eCLIP9.26□□□□□ -0.93
CD46-212ENST00000469535 SAFB2Q14151 953 aaKnown RBP eCLIP9.26□□□□□ -0.931e-6■■□□□ 13.1
CD46-212ENST00000469535 OS9Q13438 667 aaPredicted RBP9.26□□□□□ -0.93
CD46-212ENST00000469535 CLSTN1O94985 981 aa9.25□□□□□ -0.93
CD46-212ENST00000469535 PAK3O75914 559 aaPredicted RBP9.25□□□□□ -0.93
CD46-212ENST00000469535 HDGFP51858 240 aaKnown RBP9.24□□□□□ -0.93
CD46-212ENST00000469535 U2SURPO15042 1029 aaKnown RBP9.24□□□□□ -0.93
CD46-212ENST00000469535 FTSJ3Q8IY81 847 aaKnown RBP9.24□□□□□ -0.93
CD46-212ENST00000469535 EIF4G1Q04637 1599 aaKnown RBP9.24□□□□□ -0.93
CD46-212ENST00000469535 NCLP19338 710 aaKnown RBP9.24□□□□□ -0.93
CD46-212ENST00000469535 CDCA8Q53HL2 280 aa9.24□□□□□ -0.93
CD46-212ENST00000469535 CARD11Q9BXL7 1154 aa9.23□□□□□ -0.93
CD46-212ENST00000469535 GGT6Q6P531 493 aa9.23□□□□□ -0.93
CD46-212ENST00000469535 ZNF330Q9Y3S2 320 aaPredicted RBP9.23□□□□□ -0.93
CD46-212ENST00000469535 NAP1L2Q9ULW6 460 aaPredicted RBP9.23□□□□□ -0.93
CD46-212ENST00000469535 CSB-PGBD3P0DP91 1061 aa9.23□□□□□ -0.93
CD46-212ENST00000469535 BAZ1BQ9UIG0 1483 aaKnown RBP9.23□□□□□ -0.93
CD46-212ENST00000469535 ZRSR1Q15695 479 aaKnown RBP9.23□□□□□ -0.93
CD46-212ENST00000469535 NUDCQ9Y266 331 aa9.22□□□□□ -0.93
CD46-212ENST00000469535 CLIP1P30622 1438 aa9.22□□□□□ -0.93
CD46-212ENST00000469535 EIF5BO60841 1220 aaKnown RBP9.22□□□□□ -0.93
CD46-212ENST00000469535 SRPK2P78362 688 aaKnown RBP9.22□□□□□ -0.93
CD46-212ENST00000469535 CASC1Q6TDU7 716 aa9.22□□□□□ -0.93
CD46-212ENST00000469535 STK26Q9P289 416 aa9.21□□□□□ -0.93
CD46-212ENST00000469535 NBR1Q14596 966 aa9.21□□□□□ -0.93
CD46-212ENST00000469535 KANK1Q14678 1352 aa9.21□□□□□ -0.94
CD46-212ENST00000469535 FGD1P98174 961 aa9.19□□□□□ -0.94
CD46-212ENST00000469535 CC2D1BQ5T0F9 858 aaKnown RBP9.19□□□□□ -0.94
CD46-212ENST00000469535 TMX4Q9H1E5 349 aaPredicted RBP9.18□□□□□ -0.94
CD46-212ENST00000469535 FRAT1Q92837 279 aaPredicted RBP9.17□□□□□ -0.94
CD46-212ENST00000469535 KCNJ4P48050 445 aa9.17□□□□□ -0.94
CD46-212ENST00000469535 ACIN1Q9UKV3 1341 aaKnown RBP9.16□□□□□ -0.94
CD46-212ENST00000469535 CCNB3Q8WWL7 1395 aa9.15□□□□□ -0.94
CD46-212ENST00000469535 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.15□□□□□ -0.94
CD46-212ENST00000469535 KIF27Q86VH2 1401 aa9.14□□□□□ -0.95
CD46-212ENST00000469535 RTF1Q92541 710 aaKnown RBP9.14□□□□□ -0.95
CD46-212ENST00000469535 G3V3G9 751 aa9.13□□□□□ -0.95
CD46-212ENST00000469535 BECN1Q14457 450 aa9.13□□□□□ -0.95
CD46-212ENST00000469535 DCAF8Q5TAQ9 597 aa9.13□□□□□ -0.95
CD46-212ENST00000469535 DCAF11Q8TEB1 546 aa9.13□□□□□ -0.95
CD46-212ENST00000469535 GOLGA6L22H0YM25 854 aa9.12□□□□□ -0.95
CD46-212ENST00000469535 PNNQ9H307 717 aaKnown RBP9.12□□□□□ -0.95
CD46-212ENST00000469535 GOLGA3Q08378 1498 aa9.11□□□□□ -0.95
CD46-212ENST00000469535 WRNQ14191 1432 aaPredicted RBP eCLIP9.1□□□□□ -0.95
CD46-212ENST00000469535 PHF23Q9BUL5 403 aaPredicted RBP9.1□□□□□ -0.95
CD46-212ENST00000469535 MSH5O43196 834 aa9.1□□□□□ -0.95
CD46-212ENST00000469535 PTMAP06454 111 aaKnown RBP9.1□□□□□ -0.95
CD46-212ENST00000469535 MEX3CQ5U5Q3 659 aaKnown RBP9.1□□□□□ -0.95
CD46-212ENST00000469535 NUTM2DQ5VT03 806 aaPredicted RBP9.09□□□□□ -0.95
CD46-212ENST00000469535 PLCB2Q00722 1185 aa9.09□□□□□ -0.95
CD46-212ENST00000469535 MORC1Q86VD1 984 aa9.09□□□□□ -0.95
CD46-212ENST00000469535 HDGFL2Q7Z4V5 671 aaPredicted RBP9.09□□□□□ -0.95
CD46-212ENST00000469535 TMF1P82094 1093 aa9.09□□□□□ -0.95
CD46-212ENST00000469535 EID1Q9Y6B2 187 aa9.09□□□□□ -0.95
CD46-212ENST00000469535 AMER1Q5JTC6 1135 aaPredicted RBP9.08□□□□□ -0.96
CD46-212ENST00000469535 NUTM2FA1L443 756 aa9.08□□□□□ -0.96
CD46-212ENST00000469535 CHMP3Q9Y3E7 222 aa9.07□□□□□ -0.96
CD46-212ENST00000469535 RGS3P49796 1198 aa9.07□□□□□ -0.96
CD46-212ENST00000469535 BAZ1AQ9NRL2 1556 aaPredicted RBP9.07□□□□□ -0.96
CD46-212ENST00000469535 APBB1O00213 710 aa9.07□□□□□ -0.96
CD46-212ENST00000469535 TRIM44Q96DX7 344 aaPredicted RBP9.06□□□□□ -0.96
CD46-212ENST00000469535 KLHL34Q8N239 644 aa9.06□□□□□ -0.96
CD46-212ENST00000469535 DDRGK1Q96HY6 314 aa9.05□□□□□ -0.96
CD46-212ENST00000469535 SIN3AQ96ST3 1273 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms