RNA–Protein interactions for RNA: ENST00000469043.1

SCFD1-205, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 696 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-205ENST00000469043 MS4A3Q96HJ5 214 aa13.45□□□□□ -0.26
SCFD1-205ENST00000469043 FBXO3Q9UK99 471 aa13.44□□□□□ -0.26
SCFD1-205ENST00000469043 RASEFQ8IZ41 740 aa13.43□□□□□ -0.26
SCFD1-205ENST00000469043 KIF12Q96FN5 646 aa13.41□□□□□ -0.26
SCFD1-205ENST00000469043 ASTLQ6HA08 431 aaPredicted RBP13.36□□□□□ -0.27
SCFD1-205ENST00000469043 ATMINO43313 823 aaPredicted RBP13.34□□□□□ -0.27
SCFD1-205ENST00000469043 NUBP1P53384 320 aa13.34□□□□□ -0.27
SCFD1-205ENST00000469043 MAP3K13O43283 966 aa13.33□□□□□ -0.28
SCFD1-205ENST00000469043 PELP1Q8IZL8 1130 aaKnown RBP13.33□□□□□ -0.28
SCFD1-205ENST00000469043 FAM212AQ96EL1 285 aa13.31□□□□□ -0.28
SCFD1-205ENST00000469043 SLC39A7Q92504 469 aa13.3□□□□□ -0.28
SCFD1-205ENST00000469043 C7P10643 843 aa13.29□□□□□ -0.28
SCFD1-205ENST00000469043 SGIP1Q9BQI5 828 aa13.27□□□□□ -0.29
SCFD1-205ENST00000469043 METRNQ9UJH8 293 aa13.26□□□□□ -0.29
SCFD1-205ENST00000469043 TIE1P35590 1138 aa13.24□□□□□ -0.29
SCFD1-205ENST00000469043 ATN1P54259 1190 aaPredicted RBP13.24□□□□□ -0.29
SCFD1-205ENST00000469043 PCDHB13Q9Y5F0 798 aa13.24□□□□□ -0.29
SCFD1-205ENST00000469043 DCAF8Q5TAQ9 597 aa13.22□□□□□ -0.29
SCFD1-205ENST00000469043 KLHL34Q8N239 644 aa13.22□□□□□ -0.29
SCFD1-205ENST00000469043 BMP2KQ9NSY1 1161 aaPredicted RBP13.22□□□□□ -0.29
SCFD1-205ENST00000469043 POTEB2H3BUK9 544 aa13.21□□□□□ -0.29
SCFD1-205ENST00000469043 VASPP50552 380 aaPredicted RBP13.2□□□□□ -0.3
SCFD1-205ENST00000469043 TRPC6Q9Y210 931 aa13.2□□□□□ -0.3
SCFD1-205ENST00000469043 OTUD5Q96G74 571 aa13.18□□□□□ -0.3
SCFD1-205ENST00000469043 TTLL13PA6NNM8 815 aa13.14□□□□□ -0.31
SCFD1-205ENST00000469043 MAMSTRQ6ZN01 415 aa13.12□□□□□ -0.31
SCFD1-205ENST00000469043 IFNL1Q8IU54 200 aa13.12□□□□□ -0.31
SCFD1-205ENST00000469043 PYGBP11216 843 aa13.09□□□□□ -0.31
SCFD1-205ENST00000469043 GSE1Q14687 1217 aa13.09□□□□□ -0.31
SCFD1-205ENST00000469043 SEC24BO95487 1268 aa13.08□□□□□ -0.32
SCFD1-205ENST00000469043 TRIM35Q9UPQ4 493 aa13.07□□□□□ -0.32
SCFD1-205ENST00000469043 IER5LQ5T953 404 aa13.05□□□□□ -0.32
SCFD1-205ENST00000469043 TMEM106CQ9BVX2 250 aa13.05□□□□□ -0.32
SCFD1-205ENST00000469043 POTEJP0CG39 1038 aa13.03□□□□□ -0.32
SCFD1-205ENST00000469043 SCUBE2Q9NQ36 999 aa13.03□□□□□ -0.32
SCFD1-205ENST00000469043 POTEFA5A3E0 1075 aa13.02□□□□□ -0.33
SCFD1-205ENST00000469043 PCDHB8Q9UN66 801 aa12.98□□□□□ -0.33
SCFD1-205ENST00000469043 COLQQ9Y215 455 aaPredicted RBP12.98□□□□□ -0.33
SCFD1-205ENST00000469043 SPOCK2Q92563 424 aa12.97□□□□□ -0.33
SCFD1-205ENST00000469043 ZNF467Q7Z7K2 595 aaPredicted RBP12.95□□□□□ -0.34
SCFD1-205ENST00000469043 IFNLR1Q8IU57 520 aaPredicted RBP12.95□□□□□ -0.34
SCFD1-205ENST00000469043 CHRM1P11229 460 aaPredicted RBP12.94□□□□□ -0.34
SCFD1-205ENST00000469043 PLCG2P16885 1265 aa12.92□□□□□ -0.34
SCFD1-205ENST00000469043 CIZ1Q9ULV3 898 aaPredicted RBP12.9□□□□□ -0.34
SCFD1-205ENST00000469043 IRX5P78411 483 aaPredicted RBP12.85□□□□□ -0.35
SCFD1-205ENST00000469043 OCEL1Q9H607 264 aa12.85□□□□□ -0.35
SCFD1-205ENST00000469043 GOLGA2Q08379 1002 aa12.84□□□□□ -0.35
SCFD1-205ENST00000469043 POTEMA6NI47 508 aa12.81□□□□□ -0.36
SCFD1-205ENST00000469043 PSEN1P49768 467 aa12.81□□□□□ -0.36
SCFD1-205ENST00000469043 FAM163AQ96GL9 167 aaPredicted RBP12.81□□□□□ -0.36
SCFD1-205ENST00000469043 MKRN3Q13064 507 aaKnown RBP12.79□□□□□ -0.36
SCFD1-205ENST00000469043 POTEGQ6S5H5 508 aa12.79□□□□□ -0.36
SCFD1-205ENST00000469043 PDAP1Q13442 181 aaKnown RBP12.76□□□□□ -0.37
SCFD1-205ENST00000469043 SLAIN1Q8ND83 568 aa12.76□□□□□ -0.37
SCFD1-205ENST00000469043 TRIM41Q8WV44 630 aa12.74□□□□□ -0.37
SCFD1-205ENST00000469043 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.69□□□□□ -0.383e-10■■■□□ 17.2
SCFD1-205ENST00000469043 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.69□□□□□ -0.38
SCFD1-205ENST00000469043 PLSCR2Q9NRY7 297 aa12.68□□□□□ -0.38
SCFD1-205ENST00000469043 PCDH10Q9P2E7 1040 aa12.68□□□□□ -0.38
SCFD1-205ENST00000469043 L3MBTL3Q96JM7 780 aaPredicted RBP12.67□□□□□ -0.38
SCFD1-205ENST00000469043 LCE2DQ5TA82 110 aaPredicted RBP12.66□□□□□ -0.38
SCFD1-205ENST00000469043 PDCD7Q8N8D1 485 aaKnown RBP12.65□□□□□ -0.38
SCFD1-205ENST00000469043 CABP2Q9NPB3 220 aa12.64□□□□□ -0.39
SCFD1-205ENST00000469043 C3orf67Q6ZVT6 689 aa12.61□□□□□ -0.39
SCFD1-205ENST00000469043 SNPHO15079 494 aa12.6□□□□□ -0.39
SCFD1-205ENST00000469043 G3V3G9 751 aa12.56□□□□□ -0.4
SCFD1-205ENST00000469043 ILDR1Q86SU0 546 aaPredicted RBP12.56□□□□□ -0.4
SCFD1-205ENST00000469043 ST18O60284 1047 aa12.55□□□□□ -0.4
SCFD1-205ENST00000469043 RIOK3O14730 519 aaKnown RBP12.53□□□□□ -0.4
SCFD1-205ENST00000469043 DPY19L2Q6NUT2 758 aa12.52□□□□□ -0.41
SCFD1-205ENST00000469043 EFCAB3Q8N7B9 438 aa12.49□□□□□ -0.41
SCFD1-205ENST00000469043 BOLA1Q9Y3E2 137 aa12.49□□□□□ -0.41
SCFD1-205ENST00000469043 VGFO15240 615 aaPredicted RBP12.48□□□□□ -0.41
SCFD1-205ENST00000469043 TMEM121BQ9BXQ6 578 aaPredicted RBP12.47□□□□□ -0.41
SCFD1-205ENST00000469043 TAOK2Q9UL54 1235 aa12.46□□□□□ -0.41
SCFD1-205ENST00000469043 RNF25Q96BH1 459 aaPredicted RBP12.45□□□□□ -0.42
SCFD1-205ENST00000469043 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.44□□□□□ -0.42
SCFD1-205ENST00000469043 CDAN1Q8IWY9 1227 aa12.44□□□□□ -0.42
SCFD1-205ENST00000469043 ZFP91Q96JP5 570 aaPredicted RBP12.44□□□□□ -0.42
SCFD1-205ENST00000469043 SOX12O15370 315 aa12.43□□□□□ -0.42
SCFD1-205ENST00000469043 ECM2O94769 699 aaPredicted RBP12.35□□□□□ -0.43
SCFD1-205ENST00000469043 MARVELD3Q96A59 401 aa12.35□□□□□ -0.43
SCFD1-205ENST00000469043 EMP3P54852 163 aa12.31□□□□□ -0.44
SCFD1-205ENST00000469043 BCL11BQ9C0K0 894 aaPredicted RBP12.31□□□□□ -0.44
SCFD1-205ENST00000469043 PHF8Q9UPP1 1060 aa12.31□□□□□ -0.44
SCFD1-205ENST00000469043 STK24Q9Y6E0 443 aa12.3□□□□□ -0.44
SCFD1-205ENST00000469043 MICALL2Q8IY33 904 aa12.29□□□□□ -0.44
SCFD1-205ENST00000469043 NLRP6P59044 892 aa12.28□□□□□ -0.44
SCFD1-205ENST00000469043 ZNF710Q8N1W2 664 aa12.28□□□□□ -0.44
SCFD1-205ENST00000469043 DOK7Q18PE1 504 aa12.27□□□□□ -0.45
SCFD1-205ENST00000469043 STK25O00506 426 aa12.26□□□□□ -0.45
SCFD1-205ENST00000469043 MS4A4AQ96JQ5 239 aa12.26□□□□□ -0.45
SCFD1-205ENST00000469043 PKD2Q13563 968 aa12.24□□□□□ -0.45
SCFD1-205ENST00000469043 HOXB3P14651 431 aaPredicted RBP12.23□□□□□ -0.45
SCFD1-205ENST00000469043 RIMBP2O15034 1052 aa12.22□□□□□ -0.45
SCFD1-205ENST00000469043 FAM205CA6NFA0 338 aa12.21□□□□□ -0.45
SCFD1-205ENST00000469043 RGL2O15211 777 aa12.2□□□□□ -0.46
SCFD1-205ENST00000469043 FBXO22Q8NEZ5 403 aa12.19□□□□□ -0.46
SCFD1-205ENST00000469043 HS3ST6Q96QI5 342 aa12.19□□□□□ -0.46
SCFD1-205ENST00000469043 HOXB1P14653 301 aaPredicted RBP12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms