RNA–Protein interactions for RNA: ENST00000468948.1

ITGA4-205, Transcript of integrin subunit alpha 4, humanhuman

TSL 3

Gene ITGA4, Length 393 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGA4-205ENST00000468948 AKT1S1Q96B36 256 aa16.7■□□□□ 0.26
ITGA4-205ENST00000468948 RBM42Q9BTD8 480 aaKnown RBP16.7■□□□□ 0.26
ITGA4-205ENST00000468948 RNF25Q96BH1 459 aaPredicted RBP16.69■□□□□ 0.26
ITGA4-205ENST00000468948 CLEC11AQ9Y240 323 aa16.67■□□□□ 0.26
ITGA4-205ENST00000468948 PRR29P0C7W0 189 aa16.64■□□□□ 0.25
ITGA4-205ENST00000468948 CREBZFQ9NS37 354 aa16.62■□□□□ 0.25
ITGA4-205ENST00000468948 RIOK3O14730 519 aaKnown RBP16.61■□□□□ 0.25
ITGA4-205ENST00000468948 FAM212AQ96EL1 285 aa16.6■□□□□ 0.25
ITGA4-205ENST00000468948 DNAJC5Q9H3Z4 198 aa16.6■□□□□ 0.25
ITGA4-205ENST00000468948 MNX1P50219 401 aaPredicted RBP16.55■□□□□ 0.24
ITGA4-205ENST00000468948 TPRNQ4KMQ1 711 aa16.55■□□□□ 0.24
ITGA4-205ENST00000468948 REM2Q8IYK8 340 aaPredicted RBP16.55■□□□□ 0.24
ITGA4-205ENST00000468948 NKX1-1Q15270 411 aaPredicted RBP16.5■□□□□ 0.23
ITGA4-205ENST00000468948 STK25O00506 426 aa16.48■□□□□ 0.23
ITGA4-205ENST00000468948 VGFO15240 615 aaPredicted RBP16.48■□□□□ 0.23
ITGA4-205ENST00000468948 CHRM1P11229 460 aaPredicted RBP16.48■□□□□ 0.23
ITGA4-205ENST00000468948 RASEFQ8IZ41 740 aa16.47■□□□□ 0.23
ITGA4-205ENST00000468948 GTPBP6O43824 516 aaPredicted RBP16.43■□□□□ 0.22
ITGA4-205ENST00000468948 NBR1Q14596 966 aa16.4■□□□□ 0.22
ITGA4-205ENST00000468948 SGIP1Q9BQI5 828 aa16.37■□□□□ 0.21
ITGA4-205ENST00000468948 PITPNM1O00562 1244 aa16.35■□□□□ 0.21
ITGA4-205ENST00000468948 PYGBP11216 843 aa16.35■□□□□ 0.21
ITGA4-205ENST00000468948 STK24Q9Y6E0 443 aa16.35■□□□□ 0.21
ITGA4-205ENST00000468948 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.34■□□□□ 0.21
ITGA4-205ENST00000468948 ZFP91Q96JP5 570 aaPredicted RBP16.34■□□□□ 0.21
ITGA4-205ENST00000468948 BCL11BQ9C0K0 894 aaPredicted RBP16.33■□□□□ 0.2
ITGA4-205ENST00000468948 RYDENQ9NUL5 291 aaKnown RBP16.27■□□□□ 0.2
ITGA4-205ENST00000468948 CHADLQ6NUI6 762 aa16.17■□□□□ 0.18
ITGA4-205ENST00000468948 TSPYL2Q9H2G4 693 aaPredicted RBP16.16■□□□□ 0.18
ITGA4-205ENST00000468948 ZNF467Q7Z7K2 595 aaPredicted RBP16.13■□□□□ 0.17
ITGA4-205ENST00000468948 FARP1Q9Y4F1 1045 aaPredicted RBP16.08■□□□□ 0.16
ITGA4-205ENST00000468948 PDAP1Q13442 181 aaKnown RBP16.05■□□□□ 0.16
ITGA4-205ENST00000468948 PCDHB8Q9UN66 801 aa16.03■□□□□ 0.16
ITGA4-205ENST00000468948 PCDHB13Q9Y5F0 798 aa16.03■□□□□ 0.16
ITGA4-205ENST00000468948 P3H3Q8IVL6 736 aa15.97■□□□□ 0.15
ITGA4-205ENST00000468948 PRKAR2AP13861 404 aaKnown RBP15.96■□□□□ 0.15
ITGA4-205ENST00000468948 CCDC61Q9Y6R9 512 aa15.96■□□□□ 0.15
ITGA4-205ENST00000468948 PSEN1P49768 467 aa15.95■□□□□ 0.14
ITGA4-205ENST00000468948 WDR70Q9NW82 654 aa15.95■□□□□ 0.14
ITGA4-205ENST00000468948 ZNF579Q8NAF0 562 aaKnown RBP15.94■□□□□ 0.14
ITGA4-205ENST00000468948 CADPS2Q86UW7 1296 aa15.93■□□□□ 0.14
ITGA4-205ENST00000468948 MFRPQ9BY79 579 aa15.88■□□□□ 0.13
ITGA4-205ENST00000468948 PAK3O75914 559 aaPredicted RBP15.86■□□□□ 0.13
ITGA4-205ENST00000468948 FXR2P51116 673 aaKnown RBP eCLIP15.85■□□□□ 0.13
ITGA4-205ENST00000468948 KCNV2Q8TDN2 545 aa15.84■□□□□ 0.13
ITGA4-205ENST00000468948 IFNL1Q8IU54 200 aa15.81■□□□□ 0.12
ITGA4-205ENST00000468948 MAP3K13O43283 966 aa15.77■□□□□ 0.12
ITGA4-205ENST00000468948 NLRP6P59044 892 aa15.76■□□□□ 0.11
ITGA4-205ENST00000468948 EFCAB3Q8N7B9 438 aa15.76■□□□□ 0.11
ITGA4-205ENST00000468948 PPP1R37O75864 691 aa15.75■□□□□ 0.11
ITGA4-205ENST00000468948 KIF12Q96FN5 646 aa15.75■□□□□ 0.11
ITGA4-205ENST00000468948 CABP2Q9NPB3 220 aa15.75■□□□□ 0.11
ITGA4-205ENST00000468948 SOX12O15370 315 aa15.74■□□□□ 0.11
ITGA4-205ENST00000468948 FBXO22Q8NEZ5 403 aa15.72■□□□□ 0.11
ITGA4-205ENST00000468948 PHF8Q9UPP1 1060 aa15.71■□□□□ 0.11
ITGA4-205ENST00000468948 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.69■□□□□ 0.1
ITGA4-205ENST00000468948 LMOD2Q6P5Q4 547 aa15.68■□□□□ 0.1
ITGA4-205ENST00000468948 PIP4P2Q8N4L2 257 aa15.66■□□□□ 0.1
ITGA4-205ENST00000468948 ARHGEF1Q92888 912 aaKnown RBP15.65■□□□□ 0.1
ITGA4-205ENST00000468948 CHRDL2Q6WN34 429 aa15.64■□□□□ 0.09
ITGA4-205ENST00000468948 TULP1O00294 542 aaPredicted RBP15.63■□□□□ 0.09
ITGA4-205ENST00000468948 E2F4Q16254 413 aa15.63■□□□□ 0.09
ITGA4-205ENST00000468948 ZRANB1Q9UGI0 708 aa15.62■□□□□ 0.09
ITGA4-205ENST00000468948 CD44P16070 742 aaKnown RBP15.55■□□□□ 0.08
ITGA4-205ENST00000468948 PHF12Q96QT6 1004 aa15.55■□□□□ 0.08
ITGA4-205ENST00000468948 GTF3C3Q9Y5Q9 886 aa15.54■□□□□ 0.08
ITGA4-205ENST00000468948 PDE4AP27815 886 aa15.52■□□□□ 0.08
ITGA4-205ENST00000468948 GOLGA2Q08379 1002 aa15.52■□□□□ 0.08
ITGA4-205ENST00000468948 TMEM132AQ24JP5 1023 aa15.52■□□□□ 0.08
ITGA4-205ENST00000468948 LARP6Q9BRS8 491 aaKnown RBP15.52■□□□□ 0.08
ITGA4-205ENST00000468948 NCKAP5LQ9HCH0 1330 aa15.51■□□□□ 0.07
ITGA4-205ENST00000468948 MS4A4AQ96JQ5 239 aa15.51■□□□□ 0.07
ITGA4-205ENST00000468948 SEMA3EO15041 775 aa15.49■□□□□ 0.07
ITGA4-205ENST00000468948 TESPA1A2RU30 521 aaPredicted RBP15.47■□□□□ 0.07
ITGA4-205ENST00000468948 TMEM106CQ9BVX2 250 aa15.47■□□□□ 0.07
ITGA4-205ENST00000468948 ZC3H15Q8WU90 426 aaKnown RBP15.45■□□□□ 0.06
ITGA4-205ENST00000468948 MFSD10Q14728 455 aa15.44■□□□□ 0.06
ITGA4-205ENST00000468948 CRISPLD2Q9H0B8 497 aa15.42■□□□□ 0.06
ITGA4-205ENST00000468948 TIMELESSQ9UNS1 1208 aa15.42■□□□□ 0.06
ITGA4-205ENST00000468948 MKRN3Q13064 507 aaKnown RBP15.41■□□□□ 0.06
ITGA4-205ENST00000468948 DDX27Q96GQ7 796 aaKnown RBP15.41■□□□□ 0.06
ITGA4-205ENST00000468948 SMYD5Q6GMV2 418 aa15.38■□□□□ 0.05
ITGA4-205ENST00000468948 MS4A3Q96HJ5 214 aa15.38■□□□□ 0.05
ITGA4-205ENST00000468948 TRPC6Q9Y210 931 aa15.38■□□□□ 0.05
ITGA4-205ENST00000468948 ARIH1Q9Y4X5 557 aaPredicted RBP15.34■□□□□ 0.05
ITGA4-205ENST00000468948 BRPF1P55201 1214 aaPredicted RBP15.33■□□□□ 0.04
ITGA4-205ENST00000468948 CAMK2BQ13554 666 aa15.31■□□□□ 0.04
ITGA4-205ENST00000468948 ERICH6Q7L0X2 663 aa15.31■□□□□ 0.04
ITGA4-205ENST00000468948 SLC24A3Q9HC58 644 aa15.31■□□□□ 0.04
ITGA4-205ENST00000468948 C19orf67A6NJJ6 358 aa15.27■□□□□ 0.04
ITGA4-205ENST00000468948 TIE1P35590 1138 aa15.27■□□□□ 0.04
ITGA4-205ENST00000468948 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.26■□□□□ 0.03
ITGA4-205ENST00000468948 NEUROD2Q15784 382 aa15.25■□□□□ 0.03
ITGA4-205ENST00000468948 TTLL13PA6NNM8 815 aa15.24■□□□□ 0.03
ITGA4-205ENST00000468948 ZMYND10O75800 440 aa15.24■□□□□ 0.03
ITGA4-205ENST00000468948 PPP1R15BQ5SWA1 713 aa15.22■□□□□ 0.03
ITGA4-205ENST00000468948 GPHNQ9NQX3 736 aaPredicted RBP15.22■□□□□ 0.03
ITGA4-205ENST00000468948 ILDR1Q86SU0 546 aaPredicted RBP15.21■□□□□ 0.03
ITGA4-205ENST00000468948 BMP2KQ9NSY1 1161 aaPredicted RBP15.18■□□□□ 0.02
ITGA4-205ENST00000468948 MLLT3P42568 568 aaPredicted RBP15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms