RNA–Protein interactions for RNA: ENST00000467326.5

VPS50-209, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 574 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-209ENST00000467326 PCDH10Q9P2E7 1040 aa11.5□□□□□ -0.57
VPS50-209ENST00000467326 SLC39A7Q92504 469 aa11.47□□□□□ -0.57
VPS50-209ENST00000467326 C7P10643 843 aa11.45□□□□□ -0.58
VPS50-209ENST00000467326 MNX1P50219 401 aaPredicted RBP11.45□□□□□ -0.58
VPS50-209ENST00000467326 MAMSTRQ6ZN01 415 aa11.45□□□□□ -0.58
VPS50-209ENST00000467326 PLEKHG5O94827 1062 aa11.43□□□□□ -0.58
VPS50-209ENST00000467326 ASTLQ6HA08 431 aaPredicted RBP11.43□□□□□ -0.58
VPS50-209ENST00000467326 VASPP50552 380 aaPredicted RBP11.42□□□□□ -0.58
VPS50-209ENST00000467326 POTEJP0CG39 1038 aa11.41□□□□□ -0.58
VPS50-209ENST00000467326 METRNQ9UJH8 293 aa11.41□□□□□ -0.58
VPS50-209ENST00000467326 PLCD3Q8N3E9 789 aa11.39□□□□□ -0.59
VPS50-209ENST00000467326 MS4A3Q96HJ5 214 aa11.39□□□□□ -0.59
VPS50-209ENST00000467326 MIER1Q8N108 512 aa11.38□□□□□ -0.59
VPS50-209ENST00000467326 ATMINO43313 823 aaPredicted RBP11.37□□□□□ -0.59
VPS50-209ENST00000467326 LCE2DQ5TA82 110 aaPredicted RBP11.35□□□□□ -0.59
VPS50-209ENST00000467326 TSPYL2Q9H2G4 693 aaPredicted RBP11.34□□□□□ -0.59
VPS50-209ENST00000467326 SCUBE2Q9NQ36 999 aa11.33□□□□□ -0.6
VPS50-209ENST00000467326 ZBTB47Q9UFB7 747 aaPredicted RBP11.29□□□□□ -0.6
VPS50-209ENST00000467326 CCDC61Q9Y6R9 512 aa11.29□□□□□ -0.6
VPS50-209ENST00000467326 FAM163AQ96GL9 167 aaPredicted RBP11.27□□□□□ -0.61
VPS50-209ENST00000467326 KIF12Q96FN5 646 aa11.24□□□□□ -0.61
VPS50-209ENST00000467326 ATN1P54259 1190 aaPredicted RBP11.23□□□□□ -0.61
VPS50-209ENST00000467326 TIE1P35590 1138 aa11.22□□□□□ -0.61
VPS50-209ENST00000467326 KLHL34Q8N239 644 aa11.22□□□□□ -0.61
VPS50-209ENST00000467326 IFNLR1Q8IU57 520 aaPredicted RBP11.21□□□□□ -0.61
VPS50-209ENST00000467326 SEC24BO95487 1268 aa11.17□□□□□ -0.62
VPS50-209ENST00000467326 BMP2KQ9NSY1 1161 aaPredicted RBP11.17□□□□□ -0.62
VPS50-209ENST00000467326 SGIP1Q9BQI5 828 aa11.16□□□□□ -0.62
VPS50-209ENST00000467326 POTEFA5A3E0 1075 aa11.15□□□□□ -0.62
VPS50-209ENST00000467326 MAP3K13O43283 966 aa11.15□□□□□ -0.62
VPS50-209ENST00000467326 IER5LQ5T953 404 aa11.11□□□□□ -0.63
VPS50-209ENST00000467326 SPOCK2Q92563 424 aa11.11□□□□□ -0.63
VPS50-209ENST00000467326 NUBP1P53384 320 aa11.1□□□□□ -0.63
VPS50-209ENST00000467326 RASEFQ8IZ41 740 aa11.09□□□□□ -0.63
VPS50-209ENST00000467326 TTLL13PA6NNM8 815 aa11.08□□□□□ -0.64
VPS50-209ENST00000467326 CDAN1Q8IWY9 1227 aa11.07□□□□□ -0.64
VPS50-209ENST00000467326 FAM212AQ96EL1 285 aa11.06□□□□□ -0.64
VPS50-209ENST00000467326 PCDHB13Q9Y5F0 798 aa11.06□□□□□ -0.64
VPS50-209ENST00000467326 TRPC6Q9Y210 931 aa11.04□□□□□ -0.64
VPS50-209ENST00000467326 TRIM35Q9UPQ4 493 aa11.03□□□□□ -0.64
VPS50-209ENST00000467326 COLQQ9Y215 455 aaPredicted RBP11.01□□□□□ -0.65
VPS50-209ENST00000467326 GSE1Q14687 1217 aa10.97□□□□□ -0.65
VPS50-209ENST00000467326 DCAF8Q5TAQ9 597 aa10.97□□□□□ -0.65
VPS50-209ENST00000467326 PLCG2P16885 1265 aa10.96□□□□□ -0.65
VPS50-209ENST00000467326 CIZ1Q9ULV3 898 aaPredicted RBP10.96□□□□□ -0.65
VPS50-209ENST00000467326 SLAIN1Q8ND83 568 aa10.95□□□□□ -0.66
VPS50-209ENST00000467326 TMEM106CQ9BVX2 250 aa10.93□□□□□ -0.66
VPS50-209ENST00000467326 ST18O60284 1047 aa10.91□□□□□ -0.66
VPS50-209ENST00000467326 IFNL1Q8IU54 200 aa10.91□□□□□ -0.66
VPS50-209ENST00000467326 SNPHO15079 494 aa10.89□□□□□ -0.67
VPS50-209ENST00000467326 PYGBP11216 843 aa10.86□□□□□ -0.67
VPS50-209ENST00000467326 TRIM41Q8WV44 630 aa10.86□□□□□ -0.67
VPS50-209ENST00000467326 TMEM121BQ9BXQ6 578 aaPredicted RBP10.86□□□□□ -0.67
VPS50-209ENST00000467326 MMRN1Q13201 1228 aa10.85□□□□□ -0.67
VPS50-209ENST00000467326 OCEL1Q9H607 264 aa10.85□□□□□ -0.67
VPS50-209ENST00000467326 SPNS2Q8IVW8 549 aa10.83□□□□□ -0.68
VPS50-209ENST00000467326 IRX5P78411 483 aaPredicted RBP10.82□□□□□ -0.68
VPS50-209ENST00000467326 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.82□□□□□ -0.68
VPS50-209ENST00000467326 PKD2Q13563 968 aa10.81□□□□□ -0.68
VPS50-209ENST00000467326 CHRM1P11229 460 aaPredicted RBP10.8□□□□□ -0.68
VPS50-209ENST00000467326 ECM2O94769 699 aaPredicted RBP10.78□□□□□ -0.68
VPS50-209ENST00000467326 AMER1Q5JTC6 1135 aaPredicted RBP10.77□□□□□ -0.69
VPS50-209ENST00000467326 GOLGA2Q08379 1002 aa10.76□□□□□ -0.69
VPS50-209ENST00000467326 ZNF467Q7Z7K2 595 aaPredicted RBP10.75□□□□□ -0.69
VPS50-209ENST00000467326 L3MBTL3Q96JM7 780 aaPredicted RBP10.72□□□□□ -0.69
VPS50-209ENST00000467326 RTN4Q9NQC3 1192 aaKnown RBP10.72□□□□□ -0.69
VPS50-209ENST00000467326 PCDHB8Q9UN66 801 aa10.72□□□□□ -0.69
VPS50-209ENST00000467326 C3orf67Q6ZVT6 689 aa10.71□□□□□ -0.69
VPS50-209ENST00000467326 MKRN3Q13064 507 aaKnown RBP10.7□□□□□ -0.7
VPS50-209ENST00000467326 RNF25Q96BH1 459 aaPredicted RBP10.7□□□□□ -0.7
VPS50-209ENST00000467326 RIOK3O14730 519 aaKnown RBP10.69□□□□□ -0.7
VPS50-209ENST00000467326 RGL2O15211 777 aa10.67□□□□□ -0.7
VPS50-209ENST00000467326 PDAP1Q13442 181 aaKnown RBP10.65□□□□□ -0.7
VPS50-209ENST00000467326 MARVELD3Q96A59 401 aa10.65□□□□□ -0.7
VPS50-209ENST00000467326 VGFO15240 615 aaPredicted RBP10.61□□□□□ -0.71
VPS50-209ENST00000467326 PSEN1P49768 467 aa10.61□□□□□ -0.71
VPS50-209ENST00000467326 TAOK2Q9UL54 1235 aa10.61□□□□□ -0.71
VPS50-209ENST00000467326 EMP3P54852 163 aa10.6□□□□□ -0.71
VPS50-209ENST00000467326 G3V3G9 751 aa10.59□□□□□ -0.71
VPS50-209ENST00000467326 PDCD7Q8N8D1 485 aaKnown RBP10.59□□□□□ -0.71
VPS50-209ENST00000467326 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.59□□□□□ -0.71
VPS50-209ENST00000467326 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.56□□□□□ -0.72
VPS50-209ENST00000467326 ZFP91Q96JP5 570 aaPredicted RBP10.56□□□□□ -0.72
VPS50-209ENST00000467326 DCAF8L2P0C7V8 631 aa10.54□□□□□ -0.72
VPS50-209ENST00000467326 KRTAP3-3Q9BYR6 98 aa10.54□□□□□ -0.72
VPS50-209ENST00000467326 KRTAP3-2Q9BYR7 98 aa10.54□□□□□ -0.72
VPS50-209ENST00000467326 POTEB3A0JP26 581 aa10.52□□□□□ -0.73
VPS50-209ENST00000467326 POTEBQ6S5H4 581 aa10.52□□□□□ -0.73
VPS50-209ENST00000467326 STK25O00506 426 aa10.51□□□□□ -0.73
VPS50-209ENST00000467326 BCL11BQ9C0K0 894 aaPredicted RBP10.5□□□□□ -0.73
VPS50-209ENST00000467326 CABP2Q9NPB3 220 aa10.5□□□□□ -0.73
VPS50-209ENST00000467326 HS3ST6Q96QI5 342 aa10.49□□□□□ -0.73
VPS50-209ENST00000467326 FAM205CA6NFA0 338 aa10.48□□□□□ -0.73
VPS50-209ENST00000467326 STK24Q9Y6E0 443 aa10.48□□□□□ -0.73
VPS50-209ENST00000467326 HS6ST3Q8IZP7 471 aa10.47□□□□□ -0.73
VPS50-209ENST00000467326 CHGAP10645 457 aaKnown RBP10.45□□□□□ -0.74
VPS50-209ENST00000467326 ILDR1Q86SU0 546 aaPredicted RBP10.45□□□□□ -0.74
VPS50-209ENST00000467326 ZNF710Q8N1W2 664 aa10.45□□□□□ -0.74
VPS50-209ENST00000467326 BOLA1Q9Y3E2 137 aa10.44□□□□□ -0.74
VPS50-209ENST00000467326 RIMBP2O15034 1052 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms