RNA–Protein interactions for RNA: ENST00000467124.1

VPS13A-209, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5

Gene VPS13A, Length 324 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-209ENST00000467124 PAXIP1Q6ZW49 1069 aaPredicted RBP9.5□□□□□ -0.89
VPS13A-209ENST00000467124 DCAF8Q5TAQ9 597 aa9.46□□□□□ -0.9
VPS13A-209ENST00000467124 CHRM1P11229 460 aaPredicted RBP9.45□□□□□ -0.9
VPS13A-209ENST00000467124 HS6ST3Q8IZP7 471 aa9.43□□□□□ -0.9
VPS13A-209ENST00000467124 RIOK3O14730 519 aaKnown RBP9.42□□□□□ -0.9
VPS13A-209ENST00000467124 CHGAP10645 457 aaKnown RBP9.42□□□□□ -0.9
VPS13A-209ENST00000467124 RASEFQ8IZ41 740 aa9.42□□□□□ -0.9
VPS13A-209ENST00000467124 DNAJC5Q9H3Z4 198 aa9.42□□□□□ -0.9
VPS13A-209ENST00000467124 RNF25Q96BH1 459 aaPredicted RBP9.4□□□□□ -0.9
VPS13A-209ENST00000467124 KDM2AQ9Y2K7 1162 aa9.4□□□□□ -0.9
VPS13A-209ENST00000467124 VSIG10Q8N0Z9 540 aa9.39□□□□□ -0.91
VPS13A-209ENST00000467124 VGFO15240 615 aaPredicted RBP9.37□□□□□ -0.91
VPS13A-209ENST00000467124 TSHZ2Q9NRE2 1034 aa9.37□□□□□ -0.91
VPS13A-209ENST00000467124 FARP1Q9Y4F1 1045 aaPredicted RBP9.37□□□□□ -0.91
VPS13A-209ENST00000467124 FXR2P51116 673 aaKnown RBP eCLIP9.36□□□□□ -0.91
VPS13A-209ENST00000467124 SPRYD3Q8NCJ5 442 aa9.36□□□□□ -0.91
VPS13A-209ENST00000467124 SGIP1Q9BQI5 828 aa9.36□□□□□ -0.91
VPS13A-209ENST00000467124 PRKCSHP14314 528 aaPredicted RBP9.35□□□□□ -0.91
VPS13A-209ENST00000467124 PRKAR2AP13861 404 aaKnown RBP9.33□□□□□ -0.92
VPS13A-209ENST00000467124 CHADLQ6NUI6 762 aa9.33□□□□□ -0.92
VPS13A-209ENST00000467124 BCANQ96GW7 911 aa9.33□□□□□ -0.92
VPS13A-209ENST00000467124 CHRDL2Q6WN34 429 aa9.32□□□□□ -0.92
VPS13A-209ENST00000467124 ZNF467Q7Z7K2 595 aaPredicted RBP9.3□□□□□ -0.92
VPS13A-209ENST00000467124 PAK3O75914 559 aaPredicted RBP9.28□□□□□ -0.92
VPS13A-209ENST00000467124 PYGBP11216 843 aa9.28□□□□□ -0.92
VPS13A-209ENST00000467124 RYDENQ9NUL5 291 aaKnown RBP9.28□□□□□ -0.92
VPS13A-209ENST00000467124 STK25O00506 426 aa9.27□□□□□ -0.93
VPS13A-209ENST00000467124 TSPYL2Q9H2G4 693 aaPredicted RBP9.25□□□□□ -0.93
VPS13A-209ENST00000467124 PIP4P2Q8N4L2 257 aa9.24□□□□□ -0.93
VPS13A-209ENST00000467124 CCDC61Q9Y6R9 512 aa9.24□□□□□ -0.93
VPS13A-209ENST00000467124 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.22□□□□□ -0.93
VPS13A-209ENST00000467124 ZFP91Q96JP5 570 aaPredicted RBP9.22□□□□□ -0.93
VPS13A-209ENST00000467124 BCL11BQ9C0K0 894 aaPredicted RBP9.22□□□□□ -0.93
VPS13A-209ENST00000467124 PDAP1Q13442 181 aaKnown RBP9.21□□□□□ -0.94
VPS13A-209ENST00000467124 ZNF579Q8NAF0 562 aaKnown RBP9.21□□□□□ -0.94
VPS13A-209ENST00000467124 NKX1-1Q15270 411 aaPredicted RBP9.2□□□□□ -0.94
VPS13A-209ENST00000467124 STK24Q9Y6E0 443 aa9.2□□□□□ -0.94
VPS13A-209ENST00000467124 TPRNQ4KMQ1 711 aa9.18□□□□□ -0.94
VPS13A-209ENST00000467124 GTPBP6O43824 516 aaPredicted RBP9.16□□□□□ -0.94
VPS13A-209ENST00000467124 PCDHB13Q9Y5F0 798 aa9.12□□□□□ -0.95
VPS13A-209ENST00000467124 CD44P16070 742 aaKnown RBP9.11□□□□□ -0.95
VPS13A-209ENST00000467124 PSEN1P49768 467 aa9.11□□□□□ -0.95
VPS13A-209ENST00000467124 KIF12Q96FN5 646 aa9.11□□□□□ -0.95
VPS13A-209ENST00000467124 PCDHB8Q9UN66 801 aa9.1□□□□□ -0.95
VPS13A-209ENST00000467124 ZRANB1Q9UGI0 708 aa9.08□□□□□ -0.96
VPS13A-209ENST00000467124 MAP3K13O43283 966 aa9.07□□□□□ -0.96
VPS13A-209ENST00000467124 IFNL1Q8IU54 200 aa9.07□□□□□ -0.96
VPS13A-209ENST00000467124 SP7Q8TDD2 431 aaPredicted RBP9.07□□□□□ -0.96
VPS13A-209ENST00000467124 NBR1Q14596 966 aa9.04□□□□□ -0.96
VPS13A-209ENST00000467124 C19orf67A6NJJ6 358 aa9.03□□□□□ -0.96
VPS13A-209ENST00000467124 SOX12O15370 315 aa9.02□□□□□ -0.97
VPS13A-209ENST00000467124 CLCN6P51797 869 aa9□□□□□ -0.97
VPS13A-209ENST00000467124 MFRPQ9BY79 579 aa9□□□□□ -0.97
VPS13A-209ENST00000467124 NLRP6P59044 892 aa8.99□□□□□ -0.97
VPS13A-209ENST00000467124 PHF12Q96QT6 1004 aa8.99□□□□□ -0.97
VPS13A-209ENST00000467124 CABP2Q9NPB3 220 aa8.97□□□□□ -0.97
VPS13A-209ENST00000467124 P3H3Q8IVL6 736 aa8.96□□□□□ -0.98
VPS13A-209ENST00000467124 EFCAB3Q8N7B9 438 aa8.95□□□□□ -0.98
VPS13A-209ENST00000467124 TIE1P35590 1138 aa8.94□□□□□ -0.98
VPS13A-209ENST00000467124 FBXO22Q8NEZ5 403 aa8.94□□□□□ -0.98
VPS13A-209ENST00000467124 GOLGA2Q08379 1002 aa8.93□□□□□ -0.98
VPS13A-209ENST00000467124 CADPS2Q86UW7 1296 aa8.92□□□□□ -0.98
VPS13A-209ENST00000467124 MS4A3Q96HJ5 214 aa8.92□□□□□ -0.98
VPS13A-209ENST00000467124 TMEM106CQ9BVX2 250 aa8.92□□□□□ -0.98
VPS13A-209ENST00000467124 PLSCR2Q9NRY7 297 aa8.89□□□□□ -0.99
VPS13A-209ENST00000467124 PHF8Q9UPP1 1060 aa8.89□□□□□ -0.99
VPS13A-209ENST00000467124 MKRN3Q13064 507 aaKnown RBP8.88□□□□□ -0.99
VPS13A-209ENST00000467124 WDR70Q9NW82 654 aa8.88□□□□□ -0.99
VPS13A-209ENST00000467124 TTLL13PA6NNM8 815 aa8.84□□□□□ -0.99
VPS13A-209ENST00000467124 ILDR1Q86SU0 546 aaPredicted RBP8.84□□□□□ -0.99
VPS13A-209ENST00000467124 HAX1O00165 279 aa8.83□□□□□ -1
VPS13A-209ENST00000467124 PPP1R37O75864 691 aa8.82□□□□□ -1
VPS13A-209ENST00000467124 MS4A4AQ96JQ5 239 aa8.82□□□□□ -1
VPS13A-209ENST00000467124 BMP2KQ9NSY1 1161 aaPredicted RBP8.82□□□□□ -1
VPS13A-209ENST00000467124 TRPC6Q9Y210 931 aa8.82□□□□□ -1
VPS13A-209ENST00000467124 KCNV2Q8TDN2 545 aa8.81□□□□□ -1
VPS13A-209ENST00000467124 GALR2O43603 387 aaPredicted RBP8.79□□□□□ -1
VPS13A-209ENST00000467124 IER5LQ5T953 404 aa8.78□□□□□ -1
VPS13A-209ENST00000467124 TRIM35Q9UPQ4 493 aa8.78□□□□□ -1
VPS13A-209ENST00000467124 PDE4AP27815 886 aa8.77□□□□□ -1.01
VPS13A-209ENST00000467124 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.77□□□□□ -1.011e-8■■□□□ 11.8
VPS13A-209ENST00000467124 MFSD10Q14728 455 aa8.76□□□□□ -1.01
VPS13A-209ENST00000467124 ARHGEF1Q92888 912 aaKnown RBP8.76□□□□□ -1.01
VPS13A-209ENST00000467124 CRISPLD2Q9H0B8 497 aa8.76□□□□□ -1.01
VPS13A-209ENST00000467124 E2F4Q16254 413 aa8.75□□□□□ -1.01
VPS13A-209ENST00000467124 ASTLQ6HA08 431 aaPredicted RBP8.75□□□□□ -1.01
VPS13A-209ENST00000467124 NCKAP5LQ9HCH0 1330 aa8.74□□□□□ -1.01
VPS13A-209ENST00000467124 DDX27Q96GQ7 796 aaKnown RBP8.72□□□□□ -1.01
VPS13A-209ENST00000467124 ARIH1Q9Y4X5 557 aaPredicted RBP8.72□□□□□ -1.01
VPS13A-209ENST00000467124 TULP1O00294 542 aaPredicted RBP8.71□□□□□ -1.02
VPS13A-209ENST00000467124 ATMINO43313 823 aaPredicted RBP8.71□□□□□ -1.02
VPS13A-209ENST00000467124 EVX2Q03828 476 aa8.7□□□□□ -1.02
VPS13A-209ENST00000467124 LARP6Q9BRS8 491 aaKnown RBP8.7□□□□□ -1.02
VPS13A-209ENST00000467124 ATN1P54259 1190 aaPredicted RBP8.69□□□□□ -1.02
VPS13A-209ENST00000467124 IRX5P78411 483 aaPredicted RBP8.69□□□□□ -1.02
VPS13A-209ENST00000467124 LMOD2Q6P5Q4 547 aa8.69□□□□□ -1.02
VPS13A-209ENST00000467124 PDCD7Q8N8D1 485 aaKnown RBP8.69□□□□□ -1.02
VPS13A-209ENST00000467124 OCEL1Q9H607 264 aa8.69□□□□□ -1.02
VPS13A-209ENST00000467124 CAMK2BQ13554 666 aa8.68□□□□□ -1.02
VPS13A-209ENST00000467124 GPHNQ9NQX3 736 aaPredicted RBP8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 116.2 ms