RNA–Protein interactions for RNA: ENST00000465563.5

SMC4-205, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 747 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-205ENST00000465563 CCDC61Q9Y6R9 512 aa17.6■□□□□ 0.41
SMC4-205ENST00000465563 VASPP50552 380 aaPredicted RBP17.58■□□□□ 0.4
SMC4-205ENST00000465563 NUBP1P53384 320 aa17.56■□□□□ 0.4
SMC4-205ENST00000465563 MS4A3Q96HJ5 214 aa17.5■□□□□ 0.39
SMC4-205ENST00000465563 KIF12Q96FN5 646 aa17.48■□□□□ 0.39
SMC4-205ENST00000465563 KLHL34Q8N239 644 aa17.47■□□□□ 0.39
SMC4-205ENST00000465563 FAM212AQ96EL1 285 aa17.46■□□□□ 0.39
SMC4-205ENST00000465563 MAP3K13O43283 966 aa17.39■□□□□ 0.37
SMC4-205ENST00000465563 DCAF8Q5TAQ9 597 aa17.36■□□□□ 0.37
SMC4-205ENST00000465563 LHX8Q68G74 356 aa17.35■□□□□ 0.37
SMC4-205ENST00000465563 ASTLQ6HA08 431 aaPredicted RBP17.3■□□□□ 0.36
SMC4-205ENST00000465563 SGIP1Q9BQI5 828 aa17.3■□□□□ 0.36
SMC4-205ENST00000465563 ATMINO43313 823 aaPredicted RBP17.28■□□□□ 0.36
SMC4-205ENST00000465563 IFNLR1Q8IU57 520 aaPredicted RBP17.28■□□□□ 0.36
SMC4-205ENST00000465563 PCDHB13Q9Y5F0 798 aa17.28■□□□□ 0.36
SMC4-205ENST00000465563 PELP1Q8IZL8 1130 aaKnown RBP17.26■□□□□ 0.35
SMC4-205ENST00000465563 GSE1Q14687 1217 aa17.23■□□□□ 0.35
SMC4-205ENST00000465563 TRPC6Q9Y210 931 aa17.23■□□□□ 0.35
SMC4-205ENST00000465563 TIE1P35590 1138 aa17.21■□□□□ 0.35
SMC4-205ENST00000465563 SPOCK2Q92563 424 aa17.21■□□□□ 0.35
SMC4-205ENST00000465563 PYGBP11216 843 aa17.2■□□□□ 0.34
SMC4-205ENST00000465563 BMP2KQ9NSY1 1161 aaPredicted RBP17.2■□□□□ 0.34
SMC4-205ENST00000465563 ATN1P54259 1190 aaPredicted RBP17.18■□□□□ 0.34
SMC4-205ENST00000465563 IFNL1Q8IU54 200 aa17.18■□□□□ 0.34
SMC4-205ENST00000465563 SLC39A7Q92504 469 aa17.16■□□□□ 0.34
SMC4-205ENST00000465563 C7P10643 843 aa17.14■□□□□ 0.33
SMC4-205ENST00000465563 METRNQ9UJH8 293 aa17.13■□□□□ 0.33
SMC4-205ENST00000465563 TTLL13PA6NNM8 815 aa17.11■□□□□ 0.33
SMC4-205ENST00000465563 CIZ1Q9ULV3 898 aaPredicted RBP17.06■□□□□ 0.32
SMC4-205ENST00000465563 CHRM1P11229 460 aaPredicted RBP17.04■□□□□ 0.32
SMC4-205ENST00000465563 PCDHB8Q9UN66 801 aa17.03■□□□□ 0.32
SMC4-205ENST00000465563 POTEB2H3BUK9 544 aa17.02■□□□□ 0.32
SMC4-205ENST00000465563 TMEM106CQ9BVX2 250 aa17.02■□□□□ 0.32
SMC4-205ENST00000465563 TRIM35Q9UPQ4 493 aa17■□□□□ 0.31
SMC4-205ENST00000465563 ZNF467Q7Z7K2 595 aaPredicted RBP16.98■□□□□ 0.31
SMC4-205ENST00000465563 IER5LQ5T953 404 aa16.93■□□□□ 0.3
SMC4-205ENST00000465563 SEC24BO95487 1268 aa16.91■□□□□ 0.3
SMC4-205ENST00000465563 OTUD5Q96G74 571 aa16.9■□□□□ 0.3
SMC4-205ENST00000465563 POTEFA5A3E0 1075 aa16.89■□□□□ 0.29
SMC4-205ENST00000465563 TRIM41Q8WV44 630 aa16.86■□□□□ 0.29
SMC4-205ENST00000465563 COLQQ9Y215 455 aaPredicted RBP16.86■□□□□ 0.29
SMC4-205ENST00000465563 POTEJP0CG39 1038 aa16.84■□□□□ 0.29
SMC4-205ENST00000465563 MAMSTRQ6ZN01 415 aa16.83■□□□□ 0.28
SMC4-205ENST00000465563 PSEN1P49768 467 aa16.81■□□□□ 0.28
SMC4-205ENST00000465563 PDAP1Q13442 181 aaKnown RBP16.78■□□□□ 0.28
SMC4-205ENST00000465563 PLCG2P16885 1265 aa16.76■□□□□ 0.27
SMC4-205ENST00000465563 SCUBE2Q9NQ36 999 aa16.75■□□□□ 0.27
SMC4-205ENST00000465563 IRX5P78411 483 aaPredicted RBP16.74■□□□□ 0.27
SMC4-205ENST00000465563 GOLGA2Q08379 1002 aa16.74■□□□□ 0.27
SMC4-205ENST00000465563 OCEL1Q9H607 264 aa16.71■□□□□ 0.27
SMC4-205ENST00000465563 MKRN3Q13064 507 aaKnown RBP16.69■□□□□ 0.26
SMC4-205ENST00000465563 RIOK3O14730 519 aaKnown RBP16.6■□□□□ 0.25
SMC4-205ENST00000465563 CABP2Q9NPB3 220 aa16.6■□□□□ 0.25
SMC4-205ENST00000465563 RNF25Q96BH1 459 aaPredicted RBP16.58■□□□□ 0.24
SMC4-205ENST00000465563 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.57■□□□□ 0.241e-7■■■■■ 28.3
SMC4-205ENST00000465563 PDCD7Q8N8D1 485 aaKnown RBP16.55■□□□□ 0.24
SMC4-205ENST00000465563 VGFO15240 615 aaPredicted RBP16.52■□□□□ 0.24
SMC4-205ENST00000465563 ECM2O94769 699 aaPredicted RBP16.5■□□□□ 0.23
SMC4-205ENST00000465563 ILDR1Q86SU0 546 aaPredicted RBP16.48■□□□□ 0.23
SMC4-205ENST00000465563 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.47■□□□□ 0.23
SMC4-205ENST00000465563 ZFP91Q96JP5 570 aaPredicted RBP16.47■□□□□ 0.23
SMC4-205ENST00000465563 SLAIN1Q8ND83 568 aa16.46■□□□□ 0.23
SMC4-205ENST00000465563 L3MBTL3Q96JM7 780 aaPredicted RBP16.46■□□□□ 0.23
SMC4-205ENST00000465563 TAOK2Q9UL54 1235 aa16.46■□□□□ 0.23
SMC4-205ENST00000465563 PKD2Q13563 968 aa16.45■□□□□ 0.22
SMC4-205ENST00000465563 EFCAB3Q8N7B9 438 aa16.44■□□□□ 0.22
SMC4-205ENST00000465563 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.42■□□□□ 0.22
SMC4-205ENST00000465563 DPY19L2Q6NUT2 758 aa16.38■□□□□ 0.21
SMC4-205ENST00000465563 FAM163AQ96GL9 167 aaPredicted RBP16.38■□□□□ 0.21
SMC4-205ENST00000465563 C3orf67Q6ZVT6 689 aa16.37■□□□□ 0.21
SMC4-205ENST00000465563 G3V3G9 751 aa16.33■□□□□ 0.2
SMC4-205ENST00000465563 SOX12O15370 315 aa16.33■□□□□ 0.2
SMC4-205ENST00000465563 RGL2O15211 777 aa16.32■□□□□ 0.2
SMC4-205ENST00000465563 BCL11BQ9C0K0 894 aaPredicted RBP16.32■□□□□ 0.2
SMC4-205ENST00000465563 BOLA1Q9Y3E2 137 aa16.3■□□□□ 0.2
SMC4-205ENST00000465563 POTEMA6NI47 508 aa16.29■□□□□ 0.2
SMC4-205ENST00000465563 STK24Q9Y6E0 443 aa16.29■□□□□ 0.2
SMC4-205ENST00000465563 STK25O00506 426 aa16.27■□□□□ 0.2
SMC4-205ENST00000465563 LCE2DQ5TA82 110 aaPredicted RBP16.27■□□□□ 0.2
SMC4-205ENST00000465563 POTEGQ6S5H5 508 aa16.27■□□□□ 0.2
SMC4-205ENST00000465563 PHF8Q9UPP1 1060 aa16.23■□□□□ 0.19
SMC4-205ENST00000465563 SNPHO15079 494 aa16.21■□□□□ 0.19
SMC4-205ENST00000465563 MS4A4AQ96JQ5 239 aa16.19■□□□□ 0.18
SMC4-205ENST00000465563 TMEM121BQ9BXQ6 578 aaPredicted RBP16.19■□□□□ 0.18
SMC4-205ENST00000465563 NLRP6P59044 892 aa16.18■□□□□ 0.18
SMC4-205ENST00000465563 ST18O60284 1047 aa16.15■□□□□ 0.18
SMC4-205ENST00000465563 MICALL2Q8IY33 904 aa16.13■□□□□ 0.17
SMC4-205ENST00000465563 FBXO22Q8NEZ5 403 aa16.12■□□□□ 0.17
SMC4-205ENST00000465563 MFRPQ9BY79 579 aa16.11■□□□□ 0.17
SMC4-205ENST00000465563 PCDH10Q9P2E7 1040 aa16.06■□□□□ 0.16
SMC4-205ENST00000465563 HS6ST3Q8IZP7 471 aa16.01■□□□□ 0.15
SMC4-205ENST00000465563 CHGAP10645 457 aaKnown RBP15.97■□□□□ 0.15
SMC4-205ENST00000465563 TMEM92Q6UXU6 159 aa15.97■□□□□ 0.15
SMC4-205ENST00000465563 HOXB3P14651 431 aaPredicted RBP15.93■□□□□ 0.14
SMC4-205ENST00000465563 MARVELD3Q96A59 401 aa15.93■□□□□ 0.14
SMC4-205ENST00000465563 DOK7Q18PE1 504 aa15.91■□□□□ 0.14
SMC4-205ENST00000465563 PLSCR2Q9NRY7 297 aa15.91■□□□□ 0.14
SMC4-205ENST00000465563 CDAN1Q8IWY9 1227 aa15.89■□□□□ 0.13
SMC4-205ENST00000465563 ZNF710Q8N1W2 664 aa15.89■□□□□ 0.13
SMC4-205ENST00000465563 EMP3P54852 163 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms