RNA–Protein interactions for RNA: ENST00000464541.5

PTCD3-205, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5

Gene PTCD3, Length 890 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-205ENST00000464541 TSPYL2Q9H2G4 693 aaPredicted RBP16.41■□□□□ 0.22
PTCD3-205ENST00000464541 CD44P16070 742 aaKnown RBP16.4■□□□□ 0.22
PTCD3-205ENST00000464541 ECM2O94769 699 aaPredicted RBP16.38■□□□□ 0.21
PTCD3-205ENST00000464541 CHRM1P11229 460 aaPredicted RBP16.36■□□□□ 0.21
PTCD3-205ENST00000464541 CCDC61Q9Y6R9 512 aa16.34■□□□□ 0.21
PTCD3-205ENST00000464541 ZRANB1Q9UGI0 708 aa16.32■□□□□ 0.2
PTCD3-205ENST00000464541 HAX1O00165 279 aa16.3■□□□□ 0.2
PTCD3-205ENST00000464541 ZNF579Q8NAF0 562 aaKnown RBP16.25■□□□□ 0.19
PTCD3-205ENST00000464541 PYGBP11216 843 aa16.24■□□□□ 0.19
PTCD3-205ENST00000464541 SGIP1Q9BQI5 828 aa16.2■□□□□ 0.18
PTCD3-205ENST00000464541 RGL2O15211 777 aa16.18■□□□□ 0.18
PTCD3-205ENST00000464541 CLCN6P51797 869 aa16.17■□□□□ 0.18
PTCD3-205ENST00000464541 KIF12Q96FN5 646 aa16.17■□□□□ 0.18
PTCD3-205ENST00000464541 TAOK2Q9UL54 1235 aa16.16■□□□□ 0.18
PTCD3-205ENST00000464541 ZNF467Q7Z7K2 595 aaPredicted RBP16.15■□□□□ 0.18
PTCD3-205ENST00000464541 RIOK3O14730 519 aaKnown RBP16.14■□□□□ 0.17
PTCD3-205ENST00000464541 RNF25Q96BH1 459 aaPredicted RBP16.13■□□□□ 0.17
PTCD3-205ENST00000464541 PHF12Q96QT6 1004 aa16.13■□□□□ 0.17
PTCD3-205ENST00000464541 MAP3K13O43283 966 aa16.1■□□□□ 0.17
PTCD3-205ENST00000464541 EVX2Q03828 476 aa16.1■□□□□ 0.17
PTCD3-205ENST00000464541 PCDHB13Q9Y5F0 798 aa16.1■□□□□ 0.17
PTCD3-205ENST00000464541 VGFO15240 615 aaPredicted RBP16.07■□□□□ 0.16
PTCD3-205ENST00000464541 DCAF8L2P0C7V8 631 aa16.06■□□□□ 0.16
PTCD3-205ENST00000464541 IFNL1Q8IU54 200 aa16.01■□□□□ 0.15
PTCD3-205ENST00000464541 PDAP1Q13442 181 aaKnown RBP15.99■□□□□ 0.15
PTCD3-205ENST00000464541 PCDHB8Q9UN66 801 aa15.99■□□□□ 0.15
PTCD3-205ENST00000464541 MS4A3Q96HJ5 214 aa15.98■□□□□ 0.15
PTCD3-205ENST00000464541 HS6ST3Q8IZP7 471 aa15.92■□□□□ 0.14
PTCD3-205ENST00000464541 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.91■□□□□ 0.14
PTCD3-205ENST00000464541 PSEN1P49768 467 aa15.91■□□□□ 0.14
PTCD3-205ENST00000464541 ZFP91Q96JP5 570 aaPredicted RBP15.91■□□□□ 0.14
PTCD3-205ENST00000464541 GALR2O43603 387 aaPredicted RBP15.89■□□□□ 0.13
PTCD3-205ENST00000464541 CHGAP10645 457 aaKnown RBP15.89■□□□□ 0.13
PTCD3-205ENST00000464541 SP7Q8TDD2 431 aaPredicted RBP15.89■□□□□ 0.13
PTCD3-205ENST00000464541 GABBR2O75899 941 aa15.88■□□□□ 0.13
PTCD3-205ENST00000464541 STK25O00506 426 aa15.87■□□□□ 0.13
PTCD3-205ENST00000464541 TIE1P35590 1138 aa15.86■□□□□ 0.13
PTCD3-205ENST00000464541 DNAJC5Q9H3Z4 198 aa15.85■□□□□ 0.13
PTCD3-205ENST00000464541 BCL11BQ9C0K0 894 aaPredicted RBP15.83■□□□□ 0.12
PTCD3-205ENST00000464541 BBXQ8WY36 941 aaPredicted RBP15.81■□□□□ 0.12
PTCD3-205ENST00000464541 STK24Q9Y6E0 443 aa15.8■□□□□ 0.12
PTCD3-205ENST00000464541 TMEM106CQ9BVX2 250 aa15.79■□□□□ 0.12
PTCD3-205ENST00000464541 TRPC6Q9Y210 931 aa15.78■□□□□ 0.12
PTCD3-205ENST00000464541 BMP2KQ9NSY1 1161 aaPredicted RBP15.75■□□□□ 0.11
PTCD3-205ENST00000464541 TTLL13PA6NNM8 815 aa15.74■□□□□ 0.11
PTCD3-205ENST00000464541 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.73■□□□□ 0.11
PTCD3-205ENST00000464541 ASTLQ6HA08 431 aaPredicted RBP15.7■□□□□ 0.1
PTCD3-205ENST00000464541 DCBLD2Q96PD2 775 aa15.69■□□□□ 0.1
PTCD3-205ENST00000464541 CABP2Q9NPB3 220 aa15.68■□□□□ 0.1
PTCD3-205ENST00000464541 ATMINO43313 823 aaPredicted RBP15.67■□□□□ 0.1
PTCD3-205ENST00000464541 GOLGA2Q08379 1002 aa15.67■□□□□ 0.1
PTCD3-205ENST00000464541 RYDENQ9NUL5 291 aaKnown RBP15.64■□□□□ 0.09
PTCD3-205ENST00000464541 SOX12O15370 315 aa15.63■□□□□ 0.09
PTCD3-205ENST00000464541 TRIM35Q9UPQ4 493 aa15.63■□□□□ 0.09
PTCD3-205ENST00000464541 ATN1P54259 1190 aaPredicted RBP15.62■□□□□ 0.09
PTCD3-205ENST00000464541 MKRN3Q13064 507 aaKnown RBP15.61■□□□□ 0.09
PTCD3-205ENST00000464541 NKX1-1Q15270 411 aaPredicted RBP15.61■□□□□ 0.09
PTCD3-205ENST00000464541 EFCAB3Q8N7B9 438 aa15.61■□□□□ 0.09
PTCD3-205ENST00000464541 IER5LQ5T953 404 aa15.58■□□□□ 0.08
PTCD3-205ENST00000464541 PLCB2Q00722 1185 aa15.57■□□□□ 0.08
PTCD3-205ENST00000464541 SPRYD3Q8NCJ5 442 aa15.57■□□□□ 0.08
PTCD3-205ENST00000464541 NLRP6P59044 892 aa15.54■□□□□ 0.08
PTCD3-205ENST00000464541 PAXIP1Q6ZW49 1069 aaPredicted RBP15.52■□□□□ 0.08
PTCD3-205ENST00000464541 MFRPQ9BY79 579 aa15.52■□□□□ 0.08
PTCD3-205ENST00000464541 GTPBP6O43824 516 aaPredicted RBP15.51■□□□□ 0.07
PTCD3-205ENST00000464541 POTEIP0CG38 1075 aa15.51■□□□□ 0.07
PTCD3-205ENST00000464541 SLC39A7Q92504 469 aa15.5■□□□□ 0.07
PTCD3-205ENST00000464541 ILDR1Q86SU0 546 aaPredicted RBP15.49■□□□□ 0.07
PTCD3-205ENST00000464541 FBXO22Q8NEZ5 403 aa15.48■□□□□ 0.07
PTCD3-205ENST00000464541 C7P10643 843 aa15.47■□□□□ 0.07
PTCD3-205ENST00000464541 PELP1Q8IZL8 1130 aaKnown RBP15.47■□□□□ 0.07
PTCD3-205ENST00000464541 CFAP44Q96MT7 982 aa15.47■□□□□ 0.07
PTCD3-205ENST00000464541 PHF8Q9UPP1 1060 aa15.47■□□□□ 0.07
PTCD3-205ENST00000464541 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.46■□□□□ 0.075e-10■□□□□ 9
PTCD3-205ENST00000464541 IRX5P78411 483 aaPredicted RBP15.43■□□□□ 0.06
PTCD3-205ENST00000464541 OCEL1Q9H607 264 aa15.42■□□□□ 0.06
PTCD3-205ENST00000464541 PLCG2P16885 1265 aa15.39■□□□□ 0.05
PTCD3-205ENST00000464541 MS4A4AQ96JQ5 239 aa15.38■□□□□ 0.05
PTCD3-205ENST00000464541 METRNQ9UJH8 293 aa15.38■□□□□ 0.05
PTCD3-205ENST00000464541 SEC24BO95487 1268 aa15.37■□□□□ 0.05
PTCD3-205ENST00000464541 PDCD7Q8N8D1 485 aaKnown RBP15.36■□□□□ 0.05
PTCD3-205ENST00000464541 COLQQ9Y215 455 aaPredicted RBP15.29■□□□□ 0.04
PTCD3-205ENST00000464541 SLC24A1O60721 1099 aa15.27■□□□□ 0.04
PTCD3-205ENST00000464541 PPP1R37O75864 691 aa15.27■□□□□ 0.04
PTCD3-205ENST00000464541 HAP1P54257 671 aaPredicted RBP15.27■□□□□ 0.04
PTCD3-205ENST00000464541 POTEFA5A3E0 1075 aa15.26■□□□□ 0.03
PTCD3-205ENST00000464541 L3MBTL3Q96JM7 780 aaPredicted RBP15.26■□□□□ 0.03
PTCD3-205ENST00000464541 DPY19L2Q6NUT2 758 aa15.24■□□□□ 0.03
PTCD3-205ENST00000464541 G3V3G9 751 aa15.21■□□□□ 0.03
PTCD3-205ENST00000464541 BOLA1Q9Y3E2 137 aa15.21■□□□□ 0.03
PTCD3-205ENST00000464541 TSHZ2Q9NRE2 1034 aa15.2■□□□□ 0.02
PTCD3-205ENST00000464541 TMEM121BQ9BXQ6 578 aaPredicted RBP15.19■□□□□ 0.02
PTCD3-205ENST00000464541 MICALL2Q8IY33 904 aa15.17■□□□□ 0.02
PTCD3-205ENST00000464541 VSIG10Q8N0Z9 540 aa15.13■□□□□ 0.01
PTCD3-205ENST00000464541 CADPS2Q86UW7 1296 aa15.06■□□□□ 0
PTCD3-205ENST00000464541 C3orf67Q6ZVT6 689 aa15.05■□□□□ -0
PTCD3-205ENST00000464541 PDE4AP27815 886 aa15.03■□□□□ -0
PTCD3-205ENST00000464541 MAMSTRQ6ZN01 415 aa15.03■□□□□ -0
PTCD3-205ENST00000464541 CRISPLD2Q9H0B8 497 aa15.02■□□□□ -0
PTCD3-205ENST00000464541 POTEB2H3BUK9 544 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms