RNA–Protein interactions for RNA: ENST00000464001.1

ITGB1-208, Transcript of integrin subunit beta 1, humanhuman

TSL 2

Gene ITGB1, Length 316 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB1-208ENST00000464001 CCDC61Q9Y6R9 512 aa13.87□□□□□ -0.19
ITGB1-208ENST00000464001 GALR2O43603 387 aaPredicted RBP13.85□□□□□ -0.19
ITGB1-208ENST00000464001 DCBLD2Q96PD2 775 aa13.85□□□□□ -0.19
ITGB1-208ENST00000464001 FAM212AQ96EL1 285 aa13.82□□□□□ -0.2
ITGB1-208ENST00000464001 KIF12Q96FN5 646 aa13.78□□□□□ -0.2
ITGB1-208ENST00000464001 POTEIP0CG38 1075 aa13.77□□□□□ -0.21
ITGB1-208ENST00000464001 MS4A3Q96HJ5 214 aa13.77□□□□□ -0.21
ITGB1-208ENST00000464001 DCAF8Q5TAQ9 597 aa13.75□□□□□ -0.21
ITGB1-208ENST00000464001 IFNLR1Q8IU57 520 aaPredicted RBP13.72□□□□□ -0.21
ITGB1-208ENST00000464001 MAP3K13O43283 966 aa13.7□□□□□ -0.22
ITGB1-208ENST00000464001 GSE1Q14687 1217 aa13.67□□□□□ -0.22
ITGB1-208ENST00000464001 SPOCK2Q92563 424 aa13.67□□□□□ -0.22
ITGB1-208ENST00000464001 SGIP1Q9BQI5 828 aa13.67□□□□□ -0.22
ITGB1-208ENST00000464001 PCDHB13Q9Y5F0 798 aa13.64□□□□□ -0.23
ITGB1-208ENST00000464001 ASTLQ6HA08 431 aaPredicted RBP13.6□□□□□ -0.23
ITGB1-208ENST00000464001 ATMINO43313 823 aaPredicted RBP13.59□□□□□ -0.23
ITGB1-208ENST00000464001 PYGBP11216 843 aa13.58□□□□□ -0.24
ITGB1-208ENST00000464001 TIE1P35590 1138 aa13.57□□□□□ -0.24
ITGB1-208ENST00000464001 LHX8Q68G74 356 aa13.57□□□□□ -0.24
ITGB1-208ENST00000464001 IFNL1Q8IU54 200 aa13.54□□□□□ -0.24
ITGB1-208ENST00000464001 PELP1Q8IZL8 1130 aaKnown RBP13.54□□□□□ -0.24
ITGB1-208ENST00000464001 TRPC6Q9Y210 931 aa13.54□□□□□ -0.24
ITGB1-208ENST00000464001 BMP2KQ9NSY1 1161 aaPredicted RBP13.53□□□□□ -0.24
ITGB1-208ENST00000464001 CIZ1Q9ULV3 898 aaPredicted RBP13.53□□□□□ -0.24
ITGB1-208ENST00000464001 ATN1P54259 1190 aaPredicted RBP13.52□□□□□ -0.25
ITGB1-208ENST00000464001 SLC39A7Q92504 469 aa13.5□□□□□ -0.25
ITGB1-208ENST00000464001 CHRM1P11229 460 aaPredicted RBP13.49□□□□□ -0.25
ITGB1-208ENST00000464001 C7P10643 843 aa13.48□□□□□ -0.25
ITGB1-208ENST00000464001 TTLL13PA6NNM8 815 aa13.47□□□□□ -0.25
ITGB1-208ENST00000464001 ZNF467Q7Z7K2 595 aaPredicted RBP13.45□□□□□ -0.26
ITGB1-208ENST00000464001 METRNQ9UJH8 293 aa13.45□□□□□ -0.26
ITGB1-208ENST00000464001 PCDHB8Q9UN66 801 aa13.44□□□□□ -0.26
ITGB1-208ENST00000464001 TMEM106CQ9BVX2 250 aa13.42□□□□□ -0.26
ITGB1-208ENST00000464001 TRIM41Q8WV44 630 aa13.4□□□□□ -0.26
ITGB1-208ENST00000464001 TRIM35Q9UPQ4 493 aa13.4□□□□□ -0.26
ITGB1-208ENST00000464001 IER5LQ5T953 404 aa13.34□□□□□ -0.27
ITGB1-208ENST00000464001 POTEB2H3BUK9 544 aa13.32□□□□□ -0.28
ITGB1-208ENST00000464001 SEC24BO95487 1268 aa13.32□□□□□ -0.28
ITGB1-208ENST00000464001 PSEN1P49768 467 aa13.29□□□□□ -0.28
ITGB1-208ENST00000464001 PDAP1Q13442 181 aaKnown RBP13.28□□□□□ -0.28
ITGB1-208ENST00000464001 POTEFA5A3E0 1075 aa13.26□□□□□ -0.29
ITGB1-208ENST00000464001 GOLGA2Q08379 1002 aa13.24□□□□□ -0.29
ITGB1-208ENST00000464001 COLQQ9Y215 455 aaPredicted RBP13.24□□□□□ -0.29
ITGB1-208ENST00000464001 MAMSTRQ6ZN01 415 aa13.23□□□□□ -0.29
ITGB1-208ENST00000464001 OTUD5Q96G74 571 aa13.22□□□□□ -0.29
ITGB1-208ENST00000464001 PLCG2P16885 1265 aa13.21□□□□□ -0.29
ITGB1-208ENST00000464001 POTEJP0CG39 1038 aa13.19□□□□□ -0.3
ITGB1-208ENST00000464001 MKRN3Q13064 507 aaKnown RBP13.19□□□□□ -0.3
ITGB1-208ENST00000464001 IRX5P78411 483 aaPredicted RBP13.18□□□□□ -0.3
ITGB1-208ENST00000464001 RIOK3O14730 519 aaKnown RBP13.17□□□□□ -0.3
ITGB1-208ENST00000464001 OCEL1Q9H607 264 aa13.17□□□□□ -0.3
ITGB1-208ENST00000464001 SCUBE2Q9NQ36 999 aa13.17□□□□□ -0.3
ITGB1-208ENST00000464001 ECM2O94769 699 aaPredicted RBP13.12□□□□□ -0.31
ITGB1-208ENST00000464001 RNF25Q96BH1 459 aaPredicted RBP13.12□□□□□ -0.31
ITGB1-208ENST00000464001 CABP2Q9NPB3 220 aa13.12□□□□□ -0.31
ITGB1-208ENST00000464001 VGFO15240 615 aaPredicted RBP13.11□□□□□ -0.31
ITGB1-208ENST00000464001 TAOK2Q9UL54 1235 aa13.1□□□□□ -0.31
ITGB1-208ENST00000464001 PKD2Q13563 968 aa13.08□□□□□ -0.32
ITGB1-208ENST00000464001 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.08□□□□□ -0.329e-16■□□□□ 8.3
ITGB1-208ENST00000464001 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.04□□□□□ -0.32
ITGB1-208ENST00000464001 ZFP91Q96JP5 570 aaPredicted RBP13.04□□□□□ -0.32
ITGB1-208ENST00000464001 PDCD7Q8N8D1 485 aaKnown RBP13.03□□□□□ -0.32
ITGB1-208ENST00000464001 L3MBTL3Q96JM7 780 aaPredicted RBP13.01□□□□□ -0.33
ITGB1-208ENST00000464001 EFCAB3Q8N7B9 438 aa13□□□□□ -0.33
ITGB1-208ENST00000464001 ILDR1Q86SU0 546 aaPredicted RBP12.99□□□□□ -0.33
ITGB1-208ENST00000464001 RGL2O15211 777 aa12.97□□□□□ -0.33
ITGB1-208ENST00000464001 SOX12O15370 315 aa12.94□□□□□ -0.34
ITGB1-208ENST00000464001 SLAIN1Q8ND83 568 aa12.94□□□□□ -0.34
ITGB1-208ENST00000464001 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.94□□□□□ -0.34
ITGB1-208ENST00000464001 BCL11BQ9C0K0 894 aaPredicted RBP12.93□□□□□ -0.34
ITGB1-208ENST00000464001 STK24Q9Y6E0 443 aa12.92□□□□□ -0.34
ITGB1-208ENST00000464001 G3V3G9 751 aa12.91□□□□□ -0.34
ITGB1-208ENST00000464001 STK25O00506 426 aa12.91□□□□□ -0.34
ITGB1-208ENST00000464001 DPY19L2Q6NUT2 758 aa12.91□□□□□ -0.34
ITGB1-208ENST00000464001 C3orf67Q6ZVT6 689 aa12.9□□□□□ -0.34
ITGB1-208ENST00000464001 BOLA1Q9Y3E2 137 aa12.87□□□□□ -0.35
ITGB1-208ENST00000464001 FAM163AQ96GL9 167 aaPredicted RBP12.84□□□□□ -0.35
ITGB1-208ENST00000464001 PHF8Q9UPP1 1060 aa12.84□□□□□ -0.35
ITGB1-208ENST00000464001 NLRP6P59044 892 aa12.83□□□□□ -0.36
ITGB1-208ENST00000464001 SNPHO15079 494 aa12.78□□□□□ -0.36
ITGB1-208ENST00000464001 MS4A4AQ96JQ5 239 aa12.78□□□□□ -0.36
ITGB1-208ENST00000464001 TMEM121BQ9BXQ6 578 aaPredicted RBP12.77□□□□□ -0.37
ITGB1-208ENST00000464001 FBXO22Q8NEZ5 403 aa12.75□□□□□ -0.37
ITGB1-208ENST00000464001 MFRPQ9BY79 579 aa12.75□□□□□ -0.37
ITGB1-208ENST00000464001 POTEMA6NI47 508 aa12.73□□□□□ -0.37
ITGB1-208ENST00000464001 MICALL2Q8IY33 904 aa12.73□□□□□ -0.37
ITGB1-208ENST00000464001 POTEGQ6S5H5 508 aa12.72□□□□□ -0.37
ITGB1-208ENST00000464001 HS6ST3Q8IZP7 471 aa12.72□□□□□ -0.37
ITGB1-208ENST00000464001 LCE2DQ5TA82 110 aaPredicted RBP12.71□□□□□ -0.37
ITGB1-208ENST00000464001 CHGAP10645 457 aaKnown RBP12.7□□□□□ -0.38
ITGB1-208ENST00000464001 ST18O60284 1047 aa12.67□□□□□ -0.38
ITGB1-208ENST00000464001 DCAF8L2P0C7V8 631 aa12.59□□□□□ -0.39
ITGB1-208ENST00000464001 DNAJC5Q9H3Z4 198 aa12.59□□□□□ -0.39
ITGB1-208ENST00000464001 TMEM92Q6UXU6 159 aa12.58□□□□□ -0.4
ITGB1-208ENST00000464001 PCDH10Q9P2E7 1040 aa12.58□□□□□ -0.4
ITGB1-208ENST00000464001 DOK7Q18PE1 504 aa12.55□□□□□ -0.4
ITGB1-208ENST00000464001 RYDENQ9NUL5 291 aaKnown RBP12.54□□□□□ -0.4
ITGB1-208ENST00000464001 PPP1R37O75864 691 aa12.53□□□□□ -0.4
ITGB1-208ENST00000464001 HOXB3P14651 431 aaPredicted RBP12.53□□□□□ -0.4
ITGB1-208ENST00000464001 ZNF710Q8N1W2 664 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms