RNA–Protein interactions for RNA: ENST00000462429.1

VPS41-210, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 3

Gene VPS41, Length 347 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-210ENST00000462429 PIP4P2Q8N4L2 257 aa10.61□□□□□ -0.71
VPS41-210ENST00000462429 CHRM1P11229 460 aaPredicted RBP10.54□□□□□ -0.72
VPS41-210ENST00000462429 TSPYL2Q9H2G4 693 aaPredicted RBP10.53□□□□□ -0.72
VPS41-210ENST00000462429 TAOK2Q9UL54 1235 aa10.53□□□□□ -0.72
VPS41-210ENST00000462429 PAK3O75914 559 aaPredicted RBP10.51□□□□□ -0.73
VPS41-210ENST00000462429 RIOK3O14730 519 aaKnown RBP10.5□□□□□ -0.73
VPS41-210ENST00000462429 PYGBP11216 843 aa10.5□□□□□ -0.73
VPS41-210ENST00000462429 RNF25Q96BH1 459 aaPredicted RBP10.49□□□□□ -0.73
VPS41-210ENST00000462429 PLCB2Q00722 1185 aa10.48□□□□□ -0.73
VPS41-210ENST00000462429 BBXQ8WY36 941 aaPredicted RBP10.48□□□□□ -0.73
VPS41-210ENST00000462429 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.48□□□□□ -0.73
VPS41-210ENST00000462429 CHGAP10645 457 aaKnown RBP10.47□□□□□ -0.73
VPS41-210ENST00000462429 VGFO15240 615 aaPredicted RBP10.44□□□□□ -0.74
VPS41-210ENST00000462429 HS6ST3Q8IZP7 471 aa10.43□□□□□ -0.74
VPS41-210ENST00000462429 CCDC61Q9Y6R9 512 aa10.43□□□□□ -0.74
VPS41-210ENST00000462429 ZNF467Q7Z7K2 595 aaPredicted RBP10.41□□□□□ -0.74
VPS41-210ENST00000462429 CD44P16070 742 aaKnown RBP10.39□□□□□ -0.75
VPS41-210ENST00000462429 SGIP1Q9BQI5 828 aa10.38□□□□□ -0.75
VPS41-210ENST00000462429 STK25O00506 426 aa10.37□□□□□ -0.75
VPS41-210ENST00000462429 ZRANB1Q9UGI0 708 aa10.37□□□□□ -0.75
VPS41-210ENST00000462429 PAXIP1Q6ZW49 1069 aaPredicted RBP10.35□□□□□ -0.75
VPS41-210ENST00000462429 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.34□□□□□ -0.75
VPS41-210ENST00000462429 ZNF579Q8NAF0 562 aaKnown RBP10.34□□□□□ -0.75
VPS41-210ENST00000462429 ZFP91Q96JP5 570 aaPredicted RBP10.34□□□□□ -0.75
VPS41-210ENST00000462429 DNAJC5Q9H3Z4 198 aa10.34□□□□□ -0.75
VPS41-210ENST00000462429 HAP1P54257 671 aaPredicted RBP10.33□□□□□ -0.76
VPS41-210ENST00000462429 SPRYD3Q8NCJ5 442 aa10.33□□□□□ -0.76
VPS41-210ENST00000462429 CFAP44Q96MT7 982 aa10.33□□□□□ -0.76
VPS41-210ENST00000462429 PDAP1Q13442 181 aaKnown RBP10.32□□□□□ -0.76
VPS41-210ENST00000462429 KIF12Q96FN5 646 aa10.32□□□□□ -0.76
VPS41-210ENST00000462429 BCL11BQ9C0K0 894 aaPredicted RBP10.32□□□□□ -0.76
VPS41-210ENST00000462429 PCDHB13Q9Y5F0 798 aa10.32□□□□□ -0.76
VPS41-210ENST00000462429 C19orf67A6NJJ6 358 aa10.31□□□□□ -0.76
VPS41-210ENST00000462429 PCDHB8Q9UN66 801 aa10.31□□□□□ -0.76
VPS41-210ENST00000462429 STK24Q9Y6E0 443 aa10.31□□□□□ -0.76
VPS41-210ENST00000462429 MAP3K13O43283 966 aa10.3□□□□□ -0.76
VPS41-210ENST00000462429 IFNL1Q8IU54 200 aa10.27□□□□□ -0.77
VPS41-210ENST00000462429 PHF12Q96QT6 1004 aa10.27□□□□□ -0.77
VPS41-210ENST00000462429 PSEN1P49768 467 aa10.26□□□□□ -0.77
VPS41-210ENST00000462429 NKX1-1Q15270 411 aaPredicted RBP10.23□□□□□ -0.77
VPS41-210ENST00000462429 RYDENQ9NUL5 291 aaKnown RBP10.23□□□□□ -0.77
VPS41-210ENST00000462429 HAX1O00165 279 aa10.22□□□□□ -0.77
VPS41-210ENST00000462429 VSIG10Q8N0Z9 540 aa10.19□□□□□ -0.78
VPS41-210ENST00000462429 GTPBP6O43824 516 aaPredicted RBP10.18□□□□□ -0.78
VPS41-210ENST00000462429 MS4A3Q96HJ5 214 aa10.16□□□□□ -0.78
VPS41-210ENST00000462429 CLCN6P51797 869 aa10.15□□□□□ -0.78
VPS41-210ENST00000462429 TSHZ2Q9NRE2 1034 aa10.14□□□□□ -0.79
VPS41-210ENST00000462429 CABP2Q9NPB3 220 aa10.13□□□□□ -0.79
VPS41-210ENST00000462429 TMEM106CQ9BVX2 250 aa10.11□□□□□ -0.79
VPS41-210ENST00000462429 GOLGA2Q08379 1002 aa10.1□□□□□ -0.79
VPS41-210ENST00000462429 SOX12O15370 315 aa10.09□□□□□ -0.79
VPS41-210ENST00000462429 EVX2Q03828 476 aa10.09□□□□□ -0.79
VPS41-210ENST00000462429 EFCAB3Q8N7B9 438 aa10.09□□□□□ -0.79
VPS41-210ENST00000462429 TIE1P35590 1138 aa10.08□□□□□ -0.8
VPS41-210ENST00000462429 POTEHQ6S545 545 aa10.08□□□□□ -0.8
VPS41-210ENST00000462429 TRPC6Q9Y210 931 aa10.08□□□□□ -0.8
VPS41-210ENST00000462429 MFRPQ9BY79 579 aa10.07□□□□□ -0.8
VPS41-210ENST00000462429 GALR2O43603 387 aaPredicted RBP10.06□□□□□ -0.8
VPS41-210ENST00000462429 NLRP6P59044 892 aa10.06□□□□□ -0.8
VPS41-210ENST00000462429 KDM2AQ9Y2K7 1162 aa10.05□□□□□ -0.8
VPS41-210ENST00000462429 TTLL13PA6NNM8 815 aa10.03□□□□□ -0.8
VPS41-210ENST00000462429 MKRN3Q13064 507 aaKnown RBP10.03□□□□□ -0.8
VPS41-210ENST00000462429 BMP2KQ9NSY1 1161 aaPredicted RBP10.02□□□□□ -0.81
VPS41-210ENST00000462429 PHF8Q9UPP1 1060 aa10.02□□□□□ -0.81
VPS41-210ENST00000462429 FBXO22Q8NEZ5 403 aa10□□□□□ -0.81
VPS41-210ENST00000462429 TRIM35Q9UPQ4 493 aa9.97□□□□□ -0.81
VPS41-210ENST00000462429 GABBR2O75899 941 aa9.95□□□□□ -0.82
VPS41-210ENST00000462429 PPP1R37O75864 691 aa9.93□□□□□ -0.82
VPS41-210ENST00000462429 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.93□□□□□ -0.821e-6■■■□□ 18.6
VPS41-210ENST00000462429 ATMINO43313 823 aaPredicted RBP9.92□□□□□ -0.82
VPS41-210ENST00000462429 ASTLQ6HA08 431 aaPredicted RBP9.92□□□□□ -0.82
VPS41-210ENST00000462429 BCANQ96GW7 911 aa9.92□□□□□ -0.82
VPS41-210ENST00000462429 MS4A4AQ96JQ5 239 aa9.92□□□□□ -0.82
VPS41-210ENST00000462429 ATN1P54259 1190 aaPredicted RBP9.91□□□□□ -0.82
VPS41-210ENST00000462429 DCBLD2Q96PD2 775 aa9.9□□□□□ -0.82
VPS41-210ENST00000462429 IER5LQ5T953 404 aa9.88□□□□□ -0.83
VPS41-210ENST00000462429 ILDR1Q86SU0 546 aaPredicted RBP9.88□□□□□ -0.83
VPS41-210ENST00000462429 CADPS2Q86UW7 1296 aa9.88□□□□□ -0.83
VPS41-210ENST00000462429 WDR70Q9NW82 654 aa9.87□□□□□ -0.83
VPS41-210ENST00000462429 SP7Q8TDD2 431 aaPredicted RBP9.84□□□□□ -0.83
VPS41-210ENST00000462429 OCEL1Q9H607 264 aa9.83□□□□□ -0.84
VPS41-210ENST00000462429 PLCG2P16885 1265 aa9.82□□□□□ -0.84
VPS41-210ENST00000462429 IRX5P78411 483 aaPredicted RBP9.82□□□□□ -0.84
VPS41-210ENST00000462429 PDCD7Q8N8D1 485 aaKnown RBP9.81□□□□□ -0.84
VPS41-210ENST00000462429 P3H3Q8IVL6 736 aa9.8□□□□□ -0.84
VPS41-210ENST00000462429 PDE4AP27815 886 aa9.79□□□□□ -0.84
VPS41-210ENST00000462429 NBR1Q14596 966 aa9.79□□□□□ -0.84
VPS41-210ENST00000462429 DPY19L2Q6NUT2 758 aa9.79□□□□□ -0.84
VPS41-210ENST00000462429 SLC39A7Q92504 469 aa9.79□□□□□ -0.84
VPS41-210ENST00000462429 G3V3G9 751 aa9.78□□□□□ -0.84
VPS41-210ENST00000462429 SEC24BO95487 1268 aa9.78□□□□□ -0.84
VPS41-210ENST00000462429 PELP1Q8IZL8 1130 aaKnown RBP9.77□□□□□ -0.85
VPS41-210ENST00000462429 C7P10643 843 aa9.76□□□□□ -0.85
VPS41-210ENST00000462429 NCKAP5LQ9HCH0 1330 aa9.76□□□□□ -0.85
VPS41-210ENST00000462429 MICALL2Q8IY33 904 aa9.75□□□□□ -0.85
VPS41-210ENST00000462429 L3MBTL3Q96JM7 780 aaPredicted RBP9.75□□□□□ -0.85
VPS41-210ENST00000462429 LARP6Q9BRS8 491 aaKnown RBP9.75□□□□□ -0.85
VPS41-210ENST00000462429 CRISPLD2Q9H0B8 497 aa9.75□□□□□ -0.85
VPS41-210ENST00000462429 BOLA1Q9Y3E2 137 aa9.75□□□□□ -0.85
VPS41-210ENST00000462429 MFSD10Q14728 455 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms