RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 RASEFQ8IZ41 740 aa12.45□□□□□ -0.42
VPS41-209ENST00000457055 MS4A3Q96HJ5 214 aa12.45□□□□□ -0.42
VPS41-209ENST00000457055 FBXO3Q9UK99 471 aa12.42□□□□□ -0.42
VPS41-209ENST00000457055 KIF12Q96FN5 646 aa12.37□□□□□ -0.43
VPS41-209ENST00000457055 NUBP1P53384 320 aa12.35□□□□□ -0.43
VPS41-209ENST00000457055 ASTLQ6HA08 431 aaPredicted RBP12.32□□□□□ -0.44
VPS41-209ENST00000457055 MAP3K13O43283 966 aa12.31□□□□□ -0.44
VPS41-209ENST00000457055 PELP1Q8IZL8 1130 aaKnown RBP12.31□□□□□ -0.44
VPS41-209ENST00000457055 ATMINO43313 823 aaPredicted RBP12.3□□□□□ -0.44
VPS41-209ENST00000457055 FAM212AQ96EL1 285 aa12.3□□□□□ -0.44
VPS41-209ENST00000457055 VASPP50552 380 aaPredicted RBP12.27□□□□□ -0.45
VPS41-209ENST00000457055 METRNQ9UJH8 293 aa12.24□□□□□ -0.45
VPS41-209ENST00000457055 TRPC6Q9Y210 931 aa12.24□□□□□ -0.45
VPS41-209ENST00000457055 SLC39A7Q92504 469 aa12.23□□□□□ -0.45
VPS41-209ENST00000457055 BMP2KQ9NSY1 1161 aaPredicted RBP12.23□□□□□ -0.45
VPS41-209ENST00000457055 ATN1P54259 1190 aaPredicted RBP12.22□□□□□ -0.45
VPS41-209ENST00000457055 PCDHB13Q9Y5F0 798 aa12.22□□□□□ -0.45
VPS41-209ENST00000457055 C7P10643 843 aa12.21□□□□□ -0.45
VPS41-209ENST00000457055 KLHL34Q8N239 644 aa12.21□□□□□ -0.45
VPS41-209ENST00000457055 POTEB2H3BUK9 544 aa12.2□□□□□ -0.46
VPS41-209ENST00000457055 TIE1P35590 1138 aa12.2□□□□□ -0.46
VPS41-209ENST00000457055 SGIP1Q9BQI5 828 aa12.2□□□□□ -0.46
VPS41-209ENST00000457055 DCAF8Q5TAQ9 597 aa12.19□□□□□ -0.46
VPS41-209ENST00000457055 TTLL13PA6NNM8 815 aa12.15□□□□□ -0.46
VPS41-209ENST00000457055 IFNL1Q8IU54 200 aa12.14□□□□□ -0.47
VPS41-209ENST00000457055 OTUD5Q96G74 571 aa12.13□□□□□ -0.47
VPS41-209ENST00000457055 PYGBP11216 843 aa12.12□□□□□ -0.47
VPS41-209ENST00000457055 TRIM35Q9UPQ4 493 aa12.08□□□□□ -0.48
VPS41-209ENST00000457055 GSE1Q14687 1217 aa12.07□□□□□ -0.48
VPS41-209ENST00000457055 TMEM106CQ9BVX2 250 aa12.06□□□□□ -0.48
VPS41-209ENST00000457055 POTEFA5A3E0 1075 aa12.04□□□□□ -0.48
VPS41-209ENST00000457055 POTEJP0CG39 1038 aa12.04□□□□□ -0.48
VPS41-209ENST00000457055 IFNLR1Q8IU57 520 aaPredicted RBP12.04□□□□□ -0.48
VPS41-209ENST00000457055 SEC24BO95487 1268 aa12.03□□□□□ -0.48
VPS41-209ENST00000457055 MAMSTRQ6ZN01 415 aa12.02□□□□□ -0.49
VPS41-209ENST00000457055 IER5LQ5T953 404 aa12.01□□□□□ -0.49
VPS41-209ENST00000457055 SPOCK2Q92563 424 aa12.01□□□□□ -0.49
VPS41-209ENST00000457055 PCDHB8Q9UN66 801 aa12.01□□□□□ -0.49
VPS41-209ENST00000457055 COLQQ9Y215 455 aaPredicted RBP12□□□□□ -0.49
VPS41-209ENST00000457055 SCUBE2Q9NQ36 999 aa11.98□□□□□ -0.49
VPS41-209ENST00000457055 ZNF467Q7Z7K2 595 aaPredicted RBP11.95□□□□□ -0.5
VPS41-209ENST00000457055 CIZ1Q9ULV3 898 aaPredicted RBP11.94□□□□□ -0.5
VPS41-209ENST00000457055 CHRM1P11229 460 aaPredicted RBP11.93□□□□□ -0.5
VPS41-209ENST00000457055 PLCG2P16885 1265 aa11.91□□□□□ -0.5
VPS41-209ENST00000457055 IRX5P78411 483 aaPredicted RBP11.87□□□□□ -0.51
VPS41-209ENST00000457055 PSEN1P49768 467 aa11.84□□□□□ -0.51
VPS41-209ENST00000457055 OCEL1Q9H607 264 aa11.83□□□□□ -0.52
VPS41-209ENST00000457055 GOLGA2Q08379 1002 aa11.82□□□□□ -0.52
VPS41-209ENST00000457055 PDAP1Q13442 181 aaKnown RBP11.8□□□□□ -0.52
VPS41-209ENST00000457055 MKRN3Q13064 507 aaKnown RBP11.79□□□□□ -0.52
VPS41-209ENST00000457055 POTEMA6NI47 508 aa11.77□□□□□ -0.53
VPS41-209ENST00000457055 TRIM41Q8WV44 630 aa11.77□□□□□ -0.53
VPS41-209ENST00000457055 POTEGQ6S5H5 508 aa11.75□□□□□ -0.53
VPS41-209ENST00000457055 SLAIN1Q8ND83 568 aa11.75□□□□□ -0.53
VPS41-209ENST00000457055 FAM163AQ96GL9 167 aaPredicted RBP11.75□□□□□ -0.53
VPS41-209ENST00000457055 PDCD7Q8N8D1 485 aaKnown RBP11.72□□□□□ -0.53
VPS41-209ENST00000457055 CABP2Q9NPB3 220 aa11.71□□□□□ -0.53
VPS41-209ENST00000457055 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.71□□□□□ -0.535e-7■■■□□ 19.2
VPS41-209ENST00000457055 LCE2DQ5TA82 110 aaPredicted RBP11.7□□□□□ -0.54
VPS41-209ENST00000457055 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.67□□□□□ -0.54
VPS41-209ENST00000457055 L3MBTL3Q96JM7 780 aaPredicted RBP11.65□□□□□ -0.54
VPS41-209ENST00000457055 C3orf67Q6ZVT6 689 aa11.64□□□□□ -0.55
VPS41-209ENST00000457055 RIOK3O14730 519 aaKnown RBP11.61□□□□□ -0.55
VPS41-209ENST00000457055 ILDR1Q86SU0 546 aaPredicted RBP11.61□□□□□ -0.55
VPS41-209ENST00000457055 PLSCR2Q9NRY7 297 aa11.61□□□□□ -0.55
VPS41-209ENST00000457055 RNF25Q96BH1 459 aaPredicted RBP11.6□□□□□ -0.55
VPS41-209ENST00000457055 DPY19L2Q6NUT2 758 aa11.58□□□□□ -0.56
VPS41-209ENST00000457055 EFCAB3Q8N7B9 438 aa11.57□□□□□ -0.56
VPS41-209ENST00000457055 PCDH10Q9P2E7 1040 aa11.56□□□□□ -0.56
VPS41-209ENST00000457055 G3V3G9 751 aa11.55□□□□□ -0.56
VPS41-209ENST00000457055 VGFO15240 615 aaPredicted RBP11.55□□□□□ -0.56
VPS41-209ENST00000457055 ST18O60284 1047 aa11.55□□□□□ -0.56
VPS41-209ENST00000457055 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.54□□□□□ -0.56
VPS41-209ENST00000457055 ZFP91Q96JP5 570 aaPredicted RBP11.54□□□□□ -0.56
VPS41-209ENST00000457055 SNPHO15079 494 aa11.53□□□□□ -0.56
VPS41-209ENST00000457055 BOLA1Q9Y3E2 137 aa11.53□□□□□ -0.56
VPS41-209ENST00000457055 ECM2O94769 699 aaPredicted RBP11.47□□□□□ -0.57
VPS41-209ENST00000457055 TAOK2Q9UL54 1235 aa11.47□□□□□ -0.57
VPS41-209ENST00000457055 TMEM121BQ9BXQ6 578 aaPredicted RBP11.46□□□□□ -0.57
VPS41-209ENST00000457055 SOX12O15370 315 aa11.45□□□□□ -0.58
VPS41-209ENST00000457055 BCL11BQ9C0K0 894 aaPredicted RBP11.43□□□□□ -0.58
VPS41-209ENST00000457055 CDAN1Q8IWY9 1227 aa11.42□□□□□ -0.58
VPS41-209ENST00000457055 PHF8Q9UPP1 1060 aa11.42□□□□□ -0.58
VPS41-209ENST00000457055 PKD2Q13563 968 aa11.4□□□□□ -0.58
VPS41-209ENST00000457055 MARVELD3Q96A59 401 aa11.4□□□□□ -0.58
VPS41-209ENST00000457055 MS4A4AQ96JQ5 239 aa11.4□□□□□ -0.58
VPS41-209ENST00000457055 STK24Q9Y6E0 443 aa11.4□□□□□ -0.58
VPS41-209ENST00000457055 MICALL2Q8IY33 904 aa11.39□□□□□ -0.59
VPS41-209ENST00000457055 STK25O00506 426 aa11.37□□□□□ -0.59
VPS41-209ENST00000457055 RGL2O15211 777 aa11.36□□□□□ -0.59
VPS41-209ENST00000457055 NLRP6P59044 892 aa11.35□□□□□ -0.59
VPS41-209ENST00000457055 EMP3P54852 163 aa11.34□□□□□ -0.59
VPS41-209ENST00000457055 HOXB3P14651 431 aaPredicted RBP11.31□□□□□ -0.6
VPS41-209ENST00000457055 FBXO22Q8NEZ5 403 aa11.31□□□□□ -0.6
VPS41-209ENST00000457055 TMEM92Q6UXU6 159 aa11.29□□□□□ -0.6
VPS41-209ENST00000457055 ZNF710Q8N1W2 664 aa11.29□□□□□ -0.6
VPS41-209ENST00000457055 MFRPQ9BY79 579 aa11.29□□□□□ -0.6
VPS41-209ENST00000457055 DOK7Q18PE1 504 aa11.28□□□□□ -0.6
VPS41-209ENST00000457055 FAM205CA6NFA0 338 aa11.25□□□□□ -0.61
VPS41-209ENST00000457055 RIMBP2O15034 1052 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms