RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 DCBLD2Q96PD2 775 aa11.96□□□□□ -0.49
USP40-209ENST00000452724 NUBP1P53384 320 aa11.95□□□□□ -0.5
USP40-209ENST00000452724 CCDC61Q9Y6R9 512 aa11.95□□□□□ -0.5
USP40-209ENST00000452724 GALR2O43603 387 aaPredicted RBP11.92□□□□□ -0.5
USP40-209ENST00000452724 DCAF8Q5TAQ9 597 aa11.86□□□□□ -0.51
USP40-209ENST00000452724 KIF12Q96FN5 646 aa11.86□□□□□ -0.51
USP40-209ENST00000452724 MS4A3Q96HJ5 214 aa11.86□□□□□ -0.51
USP40-209ENST00000452724 GSE1Q14687 1217 aa11.83□□□□□ -0.52
USP40-209ENST00000452724 POTEIP0CG38 1075 aa11.82□□□□□ -0.52
USP40-209ENST00000452724 IFNLR1Q8IU57 520 aaPredicted RBP11.82□□□□□ -0.52
USP40-209ENST00000452724 SPOCK2Q92563 424 aa11.82□□□□□ -0.52
USP40-209ENST00000452724 MAP3K13O43283 966 aa11.81□□□□□ -0.52
USP40-209ENST00000452724 SGIP1Q9BQI5 828 aa11.81□□□□□ -0.52
USP40-209ENST00000452724 PCDHB13Q9Y5F0 798 aa11.78□□□□□ -0.52
USP40-209ENST00000452724 PYGBP11216 843 aa11.72□□□□□ -0.53
USP40-209ENST00000452724 ASTLQ6HA08 431 aaPredicted RBP11.72□□□□□ -0.53
USP40-209ENST00000452724 TIE1P35590 1138 aa11.71□□□□□ -0.53
USP40-209ENST00000452724 ATMINO43313 823 aaPredicted RBP11.7□□□□□ -0.54
USP40-209ENST00000452724 CIZ1Q9ULV3 898 aaPredicted RBP11.7□□□□□ -0.54
USP40-209ENST00000452724 LHX8Q68G74 356 aa11.68□□□□□ -0.54
USP40-209ENST00000452724 IFNL1Q8IU54 200 aa11.68□□□□□ -0.54
USP40-209ENST00000452724 SLC39A7Q92504 469 aa11.66□□□□□ -0.54
USP40-209ENST00000452724 BMP2KQ9NSY1 1161 aaPredicted RBP11.66□□□□□ -0.54
USP40-209ENST00000452724 C7P10643 843 aa11.64□□□□□ -0.55
USP40-209ENST00000452724 CHRM1P11229 460 aaPredicted RBP11.64□□□□□ -0.55
USP40-209ENST00000452724 TRPC6Q9Y210 931 aa11.64□□□□□ -0.55
USP40-209ENST00000452724 ATN1P54259 1190 aaPredicted RBP11.63□□□□□ -0.55
USP40-209ENST00000452724 ZNF467Q7Z7K2 595 aaPredicted RBP11.63□□□□□ -0.55
USP40-209ENST00000452724 PELP1Q8IZL8 1130 aaKnown RBP11.62□□□□□ -0.55
USP40-209ENST00000452724 TRIM41Q8WV44 630 aa11.62□□□□□ -0.55
USP40-209ENST00000452724 TTLL13PA6NNM8 815 aa11.61□□□□□ -0.55
USP40-209ENST00000452724 METRNQ9UJH8 293 aa11.61□□□□□ -0.55
USP40-209ENST00000452724 TMEM106CQ9BVX2 250 aa11.59□□□□□ -0.55
USP40-209ENST00000452724 PCDHB8Q9UN66 801 aa11.58□□□□□ -0.56
USP40-209ENST00000452724 TRIM35Q9UPQ4 493 aa11.56□□□□□ -0.56
USP40-209ENST00000452724 IER5LQ5T953 404 aa11.53□□□□□ -0.56
USP40-209ENST00000452724 SEC24BO95487 1268 aa11.52□□□□□ -0.57
USP40-209ENST00000452724 GOLGA2Q08379 1002 aa11.48□□□□□ -0.57
USP40-209ENST00000452724 PSEN1P49768 467 aa11.47□□□□□ -0.57
USP40-209ENST00000452724 PDAP1Q13442 181 aaKnown RBP11.47□□□□□ -0.57
USP40-209ENST00000452724 MAMSTRQ6ZN01 415 aa11.44□□□□□ -0.58
USP40-209ENST00000452724 POTEB2H3BUK9 544 aa11.43□□□□□ -0.58
USP40-209ENST00000452724 PLCG2P16885 1265 aa11.43□□□□□ -0.58
USP40-209ENST00000452724 MKRN3Q13064 507 aaKnown RBP11.41□□□□□ -0.58
USP40-209ENST00000452724 SCUBE2Q9NQ36 999 aa11.4□□□□□ -0.58
USP40-209ENST00000452724 COLQQ9Y215 455 aaPredicted RBP11.39□□□□□ -0.59
USP40-209ENST00000452724 POTEFA5A3E0 1075 aa11.38□□□□□ -0.59
USP40-209ENST00000452724 RIOK3O14730 519 aaKnown RBP11.38□□□□□ -0.59
USP40-209ENST00000452724 TAOK2Q9UL54 1235 aa11.38□□□□□ -0.59
USP40-209ENST00000452724 OTUD5Q96G74 571 aa11.37□□□□□ -0.59
USP40-209ENST00000452724 OCEL1Q9H607 264 aa11.37□□□□□ -0.59
USP40-209ENST00000452724 IRX5P78411 483 aaPredicted RBP11.36□□□□□ -0.59
USP40-209ENST00000452724 ECM2O94769 699 aaPredicted RBP11.35□□□□□ -0.59
USP40-209ENST00000452724 VGFO15240 615 aaPredicted RBP11.34□□□□□ -0.59
USP40-209ENST00000452724 CABP2Q9NPB3 220 aa11.33□□□□□ -0.6
USP40-209ENST00000452724 POTEJP0CG39 1038 aa11.31□□□□□ -0.6
USP40-209ENST00000452724 RNF25Q96BH1 459 aaPredicted RBP11.3□□□□□ -0.6
USP40-209ENST00000452724 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.29□□□□□ -0.63e-7■■■■□ 24.8
USP40-209ENST00000452724 PKD2Q13563 968 aa11.27□□□□□ -0.61
USP40-209ENST00000452724 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.26□□□□□ -0.61
USP40-209ENST00000452724 ZFP91Q96JP5 570 aaPredicted RBP11.26□□□□□ -0.61
USP40-209ENST00000452724 L3MBTL3Q96JM7 780 aaPredicted RBP11.24□□□□□ -0.61
USP40-209ENST00000452724 PDCD7Q8N8D1 485 aaKnown RBP11.23□□□□□ -0.61
USP40-209ENST00000452724 EFCAB3Q8N7B9 438 aa11.21□□□□□ -0.61
USP40-209ENST00000452724 G3V3G9 751 aa11.2□□□□□ -0.62
USP40-209ENST00000452724 RGL2O15211 777 aa11.18□□□□□ -0.62
USP40-209ENST00000452724 SOX12O15370 315 aa11.18□□□□□ -0.62
USP40-209ENST00000452724 C3orf67Q6ZVT6 689 aa11.18□□□□□ -0.62
USP40-209ENST00000452724 ILDR1Q86SU0 546 aaPredicted RBP11.18□□□□□ -0.62
USP40-209ENST00000452724 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.18□□□□□ -0.62
USP40-209ENST00000452724 STK25O00506 426 aa11.17□□□□□ -0.62
USP40-209ENST00000452724 SLAIN1Q8ND83 568 aa11.17□□□□□ -0.62
USP40-209ENST00000452724 BCL11BQ9C0K0 894 aaPredicted RBP11.17□□□□□ -0.62
USP40-209ENST00000452724 STK24Q9Y6E0 443 aa11.17□□□□□ -0.62
USP40-209ENST00000452724 BOLA1Q9Y3E2 137 aa11.12□□□□□ -0.63
USP40-209ENST00000452724 DPY19L2Q6NUT2 758 aa11.1□□□□□ -0.63
USP40-209ENST00000452724 NLRP6P59044 892 aa11.09□□□□□ -0.63
USP40-209ENST00000452724 AMER1Q5JTC6 1135 aaPredicted RBP11.07□□□□□ -0.64
USP40-209ENST00000452724 SNPHO15079 494 aa11.06□□□□□ -0.64
USP40-209ENST00000452724 FAM163AQ96GL9 167 aaPredicted RBP11.06□□□□□ -0.64
USP40-209ENST00000452724 PHF8Q9UPP1 1060 aa11.06□□□□□ -0.64
USP40-209ENST00000452724 RTN4Q9NQC3 1192 aaKnown RBP11.04□□□□□ -0.64
USP40-209ENST00000452724 TMEM121BQ9BXQ6 578 aaPredicted RBP11.01□□□□□ -0.65
USP40-209ENST00000452724 HS6ST3Q8IZP7 471 aa11□□□□□ -0.65
USP40-209ENST00000452724 MS4A4AQ96JQ5 239 aa11□□□□□ -0.65
USP40-209ENST00000452724 MICALL2Q8IY33 904 aa10.99□□□□□ -0.65
USP40-209ENST00000452724 MFRPQ9BY79 579 aa10.99□□□□□ -0.65
USP40-209ENST00000452724 CHGAP10645 457 aaKnown RBP10.98□□□□□ -0.65
USP40-209ENST00000452724 FBXO22Q8NEZ5 403 aa10.98□□□□□ -0.65
USP40-209ENST00000452724 POTEMA6NI47 508 aa10.97□□□□□ -0.65
USP40-209ENST00000452724 POTEGQ6S5H5 508 aa10.96□□□□□ -0.65
USP40-209ENST00000452724 DCAF8L2P0C7V8 631 aa10.92□□□□□ -0.66
USP40-209ENST00000452724 ST18O60284 1047 aa10.91□□□□□ -0.66
USP40-209ENST00000452724 LCE2DQ5TA82 110 aaPredicted RBP10.91□□□□□ -0.66
USP40-209ENST00000452724 RYDENQ9NUL5 291 aaKnown RBP10.89□□□□□ -0.67
USP40-209ENST00000452724 PCDH10Q9P2E7 1040 aa10.87□□□□□ -0.67
USP40-209ENST00000452724 DOK7Q18PE1 504 aa10.86□□□□□ -0.67
USP40-209ENST00000452724 DNAJC5Q9H3Z4 198 aa10.86□□□□□ -0.67
USP40-209ENST00000452724 RIMBP2O15034 1052 aa10.84□□□□□ -0.67
USP40-209ENST00000452724 ZNF710Q8N1W2 664 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms