RNA–Protein interactions for RNA: ENST00000446349.5

PTPN3-204, Transcript of protein tyrosine phosphatase, non-receptor type 3, humanhuman

TSL 1 (best) BASIC

Gene PTPN3, Length 8,630 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN3-204ENST00000446349 ANP32AP39687 249 aaKnown RBP11.43□□□□□ -0.58
PTPN3-204ENST00000446349 MYO15BQ96JP2 1530 aa11.42□□□□□ -0.58
PTPN3-204ENST00000446349 MYH16Q9H6N6 1097 aa11.42□□□□□ -0.58
PTPN3-204ENST00000446349 TMC1Q8TDI8 760 aa11.42□□□□□ -0.58
PTPN3-204ENST00000446349 CARMIL2Q6F5E8 1435 aa11.41□□□□□ -0.58
PTPN3-204ENST00000446349 CFDP1Q9UEE9 299 aaPredicted RBP11.4□□□□□ -0.58
PTPN3-204ENST00000446349 HAP1P54257 671 aaPredicted RBP11.4□□□□□ -0.58
PTPN3-204ENST00000446349 KCNH8Q96L42 1107 aa11.39□□□□□ -0.59
PTPN3-204ENST00000446349 CFAP53Q96M91 514 aa11.39□□□□□ -0.59
PTPN3-204ENST00000446349 SCAF1Q9H7N4 1312 aaKnown RBP11.39□□□□□ -0.59
PTPN3-204ENST00000446349 HSP90AA1P07900 732 aaKnown RBP11.38□□□□□ -0.59
PTPN3-204ENST00000446349 CHIC2Q9UKJ5 165 aa11.36□□□□□ -0.59
PTPN3-204ENST00000446349 PNNQ9H307 717 aaKnown RBP11.36□□□□□ -0.59
PTPN3-204ENST00000446349 EIF4G2P78344 907 aaKnown RBP eCLIP11.35□□□□□ -0.59
PTPN3-204ENST00000446349 CHMP4BQ9H444 224 aaKnown RBP11.33□□□□□ -0.6
PTPN3-204ENST00000446349 ABCC8Q09428 1581 aa11.31□□□□□ -0.6
PTPN3-204ENST00000446349 TNIKQ9UKE5 1360 aa11.31□□□□□ -0.6
PTPN3-204ENST00000446349 CCNB3Q8WWL7 1395 aa11.31□□□□□ -0.6
PTPN3-204ENST00000446349 KDM2AQ9Y2K7 1162 aa11.3□□□□□ -0.6
PTPN3-204ENST00000446349 CEP162Q5TB80 1403 aa11.29□□□□□ -0.6
PTPN3-204ENST00000446349 NUDCQ9Y266 331 aa11.28□□□□□ -0.6
PTPN3-204ENST00000446349 BCL11AQ9H165 835 aa11.27□□□□□ -0.6
PTPN3-204ENST00000446349 EIF4G1Q04637 1599 aaKnown RBP11.27□□□□□ -0.61
PTPN3-204ENST00000446349 TRHP20396 242 aaPredicted RBP11.27□□□□□ -0.61
PTPN3-204ENST00000446349 CDK11BP21127 795 aaKnown RBP11.27□□□□□ -0.61
PTPN3-204ENST00000446349 KNSTRNQ9Y448 316 aa11.27□□□□□ -0.61
PTPN3-204ENST00000446349 CARMIL1Q5VZK9 1371 aa11.26□□□□□ -0.61
PTPN3-204ENST00000446349 CUX2O14529 1486 aa11.26□□□□□ -0.61
PTPN3-204ENST00000446349 A0A0G2JS52 829 aa11.26□□□□□ -0.61
PTPN3-204ENST00000446349 POGKQ9P215 609 aa11.26□□□□□ -0.61
PTPN3-204ENST00000446349 HNRNPUQ00839 825 aaKnown RBP eCLIP11.25□□□□□ -0.61
PTPN3-204ENST00000446349 CHMP4AQ9BY43 222 aa11.25□□□□□ -0.61
PTPN3-204ENST00000446349 MS4A1P11836 297 aa11.24□□□□□ -0.61
PTPN3-204ENST00000446349 FMN1Q68DA7 1419 aa11.23□□□□□ -0.61
PTPN3-204ENST00000446349 RRP7BPQ9NSQ0 103 aa11.23□□□□□ -0.61
PTPN3-204ENST00000446349 RSPH4AQ5TD94 716 aa11.22□□□□□ -0.61
PTPN3-204ENST00000446349 CASC1Q6TDU7 716 aa11.22□□□□□ -0.61
PTPN3-204ENST00000446349 FAM9BQ8IZU0 186 aa11.21□□□□□ -0.61
PTPN3-204ENST00000446349 MRS2Q9HD23 443 aa11.21□□□□□ -0.61
PTPN3-204ENST00000446349 TIMELESSQ9UNS1 1208 aa11.2□□□□□ -0.62
PTPN3-204ENST00000446349 MAPK8IP3Q9UPT6 1336 aa11.2□□□□□ -0.62
PTPN3-204ENST00000446349 ANP32EQ9BTT0 268 aa11.2□□□□□ -0.62
PTPN3-204ENST00000446349 DDX10Q13206 875 aaKnown RBP11.19□□□□□ -0.62
PTPN3-204ENST00000446349 SOGA1O94964 1423 aa11.19□□□□□ -0.62
PTPN3-204ENST00000446349 ZBTB7CA1YPR0 619 aa11.19□□□□□ -0.62
PTPN3-204ENST00000446349 TOP2AP11388 1531 aaKnown RBP11.18□□□□□ -0.62
PTPN3-204ENST00000446349 CCDC136Q96JN2 1154 aa11.18□□□□□ -0.62
PTPN3-204ENST00000446349 EFCAB2Q5VUJ9 269 aa11.17□□□□□ -0.62
PTPN3-204ENST00000446349 CFAP44Q96MT7 982 aa11.17□□□□□ -0.62
PTPN3-204ENST00000446349 CECR2Q9BXF3 1484 aa11.17□□□□□ -0.62
PTPN3-204ENST00000446349 ARHGAP35Q9NRY4 1499 aa11.17□□□□□ -0.62
PTPN3-204ENST00000446349 CARD11Q9BXL7 1154 aa11.17□□□□□ -0.62
PTPN3-204ENST00000446349 NPHP1O15259 732 aa11.16□□□□□ -0.62
PTPN3-204ENST00000446349 BECN1Q14457 450 aa11.15□□□□□ -0.62
PTPN3-204ENST00000446349 GTF3C3Q9Y5Q9 886 aa11.15□□□□□ -0.62
PTPN3-204ENST00000446349 NCLP19338 710 aaKnown RBP11.15□□□□□ -0.63
PTPN3-204ENST00000446349 TMF1P82094 1093 aa11.14□□□□□ -0.63
PTPN3-204ENST00000446349 RGL3Q3MIN7 710 aa11.14□□□□□ -0.63
PTPN3-204ENST00000446349 CADPSQ9ULU8 1353 aa11.12□□□□□ -0.63
PTPN3-204ENST00000446349 CCDC18Q5T9S5 1454 aa11.12□□□□□ -0.63
PTPN3-204ENST00000446349 DDRGK1Q96HY6 314 aa11.12□□□□□ -0.63
PTPN3-204ENST00000446349 EIF3AQ14152 1382 aaKnown RBP11.11□□□□□ -0.63
PTPN3-204ENST00000446349 CALD1Q05682 793 aaKnown RBP11.11□□□□□ -0.63
PTPN3-204ENST00000446349 GOLGA6L22H0YM25 854 aa11.11□□□□□ -0.63
PTPN3-204ENST00000446349 FTSJ3Q8IY81 847 aaKnown RBP11.11□□□□□ -0.63
PTPN3-204ENST00000446349 EID1Q9Y6B2 187 aa11.11□□□□□ -0.63
PTPN3-204ENST00000446349 ANKRD30AQ9BXX3 1397 aa11.1□□□□□ -0.63
PTPN3-204ENST00000446349 LMOD2Q6P5Q4 547 aa11.1□□□□□ -0.63
PTPN3-204ENST00000446349 CCDC88BA6NC98 1476 aa11.1□□□□□ -0.63
PTPN3-204ENST00000446349 HDGFL2Q7Z4V5 671 aaPredicted RBP11.09□□□□□ -0.63
PTPN3-204ENST00000446349 ZRSR1Q15695 479 aaKnown RBP11.08□□□□□ -0.64
PTPN3-204ENST00000446349 SMARCA4P51532 1647 aa11.08□□□□□ -0.64
PTPN3-204ENST00000446349 HDAC5Q9UQL6 1122 aa11.08□□□□□ -0.64
PTPN3-204ENST00000446349 GOLGA2Q08379 1002 aa11.08□□□□□ -0.64
PTPN3-204ENST00000446349 FKBP8Q14318 412 aa11.07□□□□□ -0.64
PTPN3-204ENST00000446349 ARXQ96QS3 562 aa11.07□□□□□ -0.64
PTPN3-204ENST00000446349 TMX4Q9H1E5 349 aaPredicted RBP11.07□□□□□ -0.64
PTPN3-204ENST00000446349 SALL2Q9Y467 1007 aaPredicted RBP11.06□□□□□ -0.64
PTPN3-204ENST00000446349 PPM1GO15355 546 aaPredicted RBP11.06□□□□□ -0.64
PTPN3-204ENST00000446349 UACAQ9BZF9 1416 aa11.06□□□□□ -0.64
PTPN3-204ENST00000446349 RAPGEF2Q9Y4G8 1499 aa11.05□□□□□ -0.64
PTPN3-204ENST00000446349 MROH2BQ7Z745 1585 aa11.04□□□□□ -0.64
PTPN3-204ENST00000446349 VPS8Q8N3P4 1428 aa11.04□□□□□ -0.64
PTPN3-204ENST00000446349 SRPK2P78362 688 aaKnown RBP11.04□□□□□ -0.64
PTPN3-204ENST00000446349 RTF1Q92541 710 aaKnown RBP11.03□□□□□ -0.64
PTPN3-204ENST00000446349 SETD5Q9C0A6 1442 aa11.01□□□□□ -0.65
PTPN3-204ENST00000446349 MLECQ14165 292 aa11□□□□□ -0.65
PTPN3-204ENST00000446349 GGT6Q6P531 493 aa11□□□□□ -0.65
PTPN3-204ENST00000446349 WIZO95785 1651 aa11□□□□□ -0.65
PTPN3-204ENST00000446349 ATAD2BQ9ULI0 1458 aa11□□□□□ -0.65
PTPN3-204ENST00000446349 OS9Q13438 667 aaPredicted RBP11□□□□□ -0.65
PTPN3-204ENST00000446349 SPAG9O60271 1321 aaKnown RBP10.99□□□□□ -0.65
PTPN3-204ENST00000446349 DCAF11Q8TEB1 546 aa10.99□□□□□ -0.65
PTPN3-204ENST00000446349 OSCARQ8IYS5 282 aa10.99□□□□□ -0.65
PTPN3-204ENST00000446349 FANCD2Q9BXW9 1451 aa10.99□□□□□ -0.65
PTPN3-204ENST00000446349 PLEKHG5O94827 1062 aa10.98□□□□□ -0.65
PTPN3-204ENST00000446349 TERF2IPQ9NYB0 399 aa10.98□□□□□ -0.65
PTPN3-204ENST00000446349 IPO8O15397 1037 aaKnown RBP10.97□□□□□ -0.65
PTPN3-204ENST00000446349 MORC1Q86VD1 984 aa10.97□□□□□ -0.65
PTPN3-204ENST00000446349 U2SURPO15042 1029 aaKnown RBP10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms