RNA–Protein interactions for RNA: ENST00000443443.1

VPS50-206, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 554 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-206ENST00000443443 CLCN6P51797 869 aa14.27□□□□□ -0.13
VPS50-206ENST00000443443 NUBP1P53384 320 aa14.27□□□□□ -0.13
VPS50-206ENST00000443443 IFNLR1Q8IU57 520 aaPredicted RBP14.27□□□□□ -0.13
VPS50-206ENST00000443443 LHX8Q68G74 356 aa14.25□□□□□ -0.13
VPS50-206ENST00000443443 DCBLD2Q96PD2 775 aa14.24□□□□□ -0.13
VPS50-206ENST00000443443 DCAF8Q5TAQ9 597 aa14.23□□□□□ -0.13
VPS50-206ENST00000443443 FAM212AQ96EL1 285 aa14.22□□□□□ -0.13
VPS50-206ENST00000443443 SPOCK2Q92563 424 aa14.18□□□□□ -0.14
VPS50-206ENST00000443443 CCDC61Q9Y6R9 512 aa14.18□□□□□ -0.14
VPS50-206ENST00000443443 MS4A3Q96HJ5 214 aa14.1□□□□□ -0.15
VPS50-206ENST00000443443 GSE1Q14687 1217 aa14.09□□□□□ -0.15
VPS50-206ENST00000443443 KIF12Q96FN5 646 aa14.09□□□□□ -0.15
VPS50-206ENST00000443443 CIZ1Q9ULV3 898 aaPredicted RBP14.08□□□□□ -0.16
VPS50-206ENST00000443443 MAP3K13O43283 966 aa14.06□□□□□ -0.16
VPS50-206ENST00000443443 PYGBP11216 843 aa14.04□□□□□ -0.16
VPS50-206ENST00000443443 PELP1Q8IZL8 1130 aaKnown RBP14.02□□□□□ -0.17
VPS50-206ENST00000443443 PCDHB13Q9Y5F0 798 aa14.01□□□□□ -0.17
VPS50-206ENST00000443443 POTEB2H3BUK9 544 aa13.94□□□□□ -0.18
VPS50-206ENST00000443443 SGIP1Q9BQI5 828 aa13.94□□□□□ -0.18
VPS50-206ENST00000443443 ATMINO43313 823 aaPredicted RBP13.93□□□□□ -0.18
VPS50-206ENST00000443443 ASTLQ6HA08 431 aaPredicted RBP13.93□□□□□ -0.18
VPS50-206ENST00000443443 IFNL1Q8IU54 200 aa13.91□□□□□ -0.18
VPS50-206ENST00000443443 TRPC6Q9Y210 931 aa13.91□□□□□ -0.18
VPS50-206ENST00000443443 PCDHB8Q9UN66 801 aa13.88□□□□□ -0.19
VPS50-206ENST00000443443 CHRM1P11229 460 aaPredicted RBP13.86□□□□□ -0.19
VPS50-206ENST00000443443 METRNQ9UJH8 293 aa13.86□□□□□ -0.19
VPS50-206ENST00000443443 ATN1P54259 1190 aaPredicted RBP13.85□□□□□ -0.19
VPS50-206ENST00000443443 OTUD5Q96G74 571 aa13.84□□□□□ -0.19
VPS50-206ENST00000443443 TIE1P35590 1138 aa13.83□□□□□ -0.2
VPS50-206ENST00000443443 BMP2KQ9NSY1 1161 aaPredicted RBP13.83□□□□□ -0.2
VPS50-206ENST00000443443 ZNF467Q7Z7K2 595 aaPredicted RBP13.81□□□□□ -0.2
VPS50-206ENST00000443443 TRIM41Q8WV44 630 aa13.81□□□□□ -0.2
VPS50-206ENST00000443443 SLC39A7Q92504 469 aa13.8□□□□□ -0.2
VPS50-206ENST00000443443 TTLL13PA6NNM8 815 aa13.78□□□□□ -0.2
VPS50-206ENST00000443443 TMEM106CQ9BVX2 250 aa13.78□□□□□ -0.2
VPS50-206ENST00000443443 C7P10643 843 aa13.76□□□□□ -0.21
VPS50-206ENST00000443443 POTEJP0CG39 1038 aa13.75□□□□□ -0.21
VPS50-206ENST00000443443 TRIM35Q9UPQ4 493 aa13.71□□□□□ -0.21
VPS50-206ENST00000443443 POTEFA5A3E0 1075 aa13.7□□□□□ -0.22
VPS50-206ENST00000443443 ECM2O94769 699 aaPredicted RBP13.69□□□□□ -0.22
VPS50-206ENST00000443443 PSEN1P49768 467 aa13.69□□□□□ -0.22
VPS50-206ENST00000443443 PDAP1Q13442 181 aaKnown RBP13.67□□□□□ -0.22
VPS50-206ENST00000443443 PKD2Q13563 968 aa13.65□□□□□ -0.22
VPS50-206ENST00000443443 GOLGA2Q08379 1002 aa13.64□□□□□ -0.23
VPS50-206ENST00000443443 RIOK3O14730 519 aaKnown RBP13.63□□□□□ -0.23
VPS50-206ENST00000443443 SEC24BO95487 1268 aa13.63□□□□□ -0.23
VPS50-206ENST00000443443 COLQQ9Y215 455 aaPredicted RBP13.62□□□□□ -0.23
VPS50-206ENST00000443443 RNF25Q96BH1 459 aaPredicted RBP13.6□□□□□ -0.23
VPS50-206ENST00000443443 IER5LQ5T953 404 aa13.57□□□□□ -0.24
VPS50-206ENST00000443443 MKRN3Q13064 507 aaKnown RBP13.56□□□□□ -0.24
VPS50-206ENST00000443443 CABP2Q9NPB3 220 aa13.55□□□□□ -0.24
VPS50-206ENST00000443443 VGFO15240 615 aaPredicted RBP13.54□□□□□ -0.24
VPS50-206ENST00000443443 TAOK2Q9UL54 1235 aa13.54□□□□□ -0.24
VPS50-206ENST00000443443 MAMSTRQ6ZN01 415 aa13.53□□□□□ -0.24
VPS50-206ENST00000443443 RGL2O15211 777 aa13.52□□□□□ -0.25
VPS50-206ENST00000443443 PLCG2P16885 1265 aa13.52□□□□□ -0.25
VPS50-206ENST00000443443 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.51□□□□□ -0.25
VPS50-206ENST00000443443 ZFP91Q96JP5 570 aaPredicted RBP13.51□□□□□ -0.25
VPS50-206ENST00000443443 SCUBE2Q9NQ36 999 aa13.5□□□□□ -0.25
VPS50-206ENST00000443443 OCEL1Q9H607 264 aa13.48□□□□□ -0.25
VPS50-206ENST00000443443 IRX5P78411 483 aaPredicted RBP13.46□□□□□ -0.25
VPS50-206ENST00000443443 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.45□□□□□ -0.26
VPS50-206ENST00000443443 POTEMA6NI47 508 aa13.43□□□□□ -0.26
VPS50-206ENST00000443443 STK25O00506 426 aa13.42□□□□□ -0.26
VPS50-206ENST00000443443 EFCAB3Q8N7B9 438 aa13.42□□□□□ -0.26
VPS50-206ENST00000443443 BCL11BQ9C0K0 894 aaPredicted RBP13.42□□□□□ -0.26
VPS50-206ENST00000443443 STK24Q9Y6E0 443 aa13.42□□□□□ -0.26
VPS50-206ENST00000443443 LCE2DQ5TA82 110 aaPredicted RBP13.41□□□□□ -0.26
VPS50-206ENST00000443443 POTEGQ6S5H5 508 aa13.4□□□□□ -0.26
VPS50-206ENST00000443443 FAM163AQ96GL9 167 aaPredicted RBP13.35□□□□□ -0.27
VPS50-206ENST00000443443 DCAF8L2P0C7V8 631 aa13.33□□□□□ -0.28
VPS50-206ENST00000443443 PDCD7Q8N8D1 485 aaKnown RBP13.33□□□□□ -0.28
VPS50-206ENST00000443443 PLSCR2Q9NRY7 297 aa13.32□□□□□ -0.28
VPS50-206ENST00000443443 SOX12O15370 315 aa13.31□□□□□ -0.28
VPS50-206ENST00000443443 DPY19L2Q6NUT2 758 aa13.3□□□□□ -0.28
VPS50-206ENST00000443443 L3MBTL3Q96JM7 780 aaPredicted RBP13.3□□□□□ -0.28
VPS50-206ENST00000443443 CHGAP10645 457 aaKnown RBP13.29□□□□□ -0.28
VPS50-206ENST00000443443 G3V3G9 751 aa13.28□□□□□ -0.28
VPS50-206ENST00000443443 SLAIN1Q8ND83 568 aa13.28□□□□□ -0.28
VPS50-206ENST00000443443 PHF8Q9UPP1 1060 aa13.27□□□□□ -0.29
VPS50-206ENST00000443443 AMER1Q5JTC6 1135 aaPredicted RBP13.26□□□□□ -0.29
VPS50-206ENST00000443443 ILDR1Q86SU0 546 aaPredicted RBP13.26□□□□□ -0.29
VPS50-206ENST00000443443 NLRP6P59044 892 aa13.23□□□□□ -0.29
VPS50-206ENST00000443443 RTN4Q9NQC3 1192 aaKnown RBP13.22□□□□□ -0.29
VPS50-206ENST00000443443 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.22□□□□□ -0.29
VPS50-206ENST00000443443 C3orf67Q6ZVT6 689 aa13.21□□□□□ -0.29
VPS50-206ENST00000443443 HS6ST3Q8IZP7 471 aa13.21□□□□□ -0.29
VPS50-206ENST00000443443 BOLA1Q9Y3E2 137 aa13.2□□□□□ -0.3
VPS50-206ENST00000443443 MFRPQ9BY79 579 aa13.18□□□□□ -0.3
VPS50-206ENST00000443443 MS4A4AQ96JQ5 239 aa13.17□□□□□ -0.3
VPS50-206ENST00000443443 FBXO22Q8NEZ5 403 aa13.14□□□□□ -0.31
VPS50-206ENST00000443443 ST18O60284 1047 aa13.12□□□□□ -0.31
VPS50-206ENST00000443443 MICALL2Q8IY33 904 aa13.08□□□□□ -0.32
VPS50-206ENST00000443443 PCDH10Q9P2E7 1040 aa13.07□□□□□ -0.32
VPS50-206ENST00000443443 TMEM121BQ9BXQ6 578 aaPredicted RBP13.06□□□□□ -0.32
VPS50-206ENST00000443443 NKX1-1Q15270 411 aaPredicted RBP13.03□□□□□ -0.32
VPS50-206ENST00000443443 PPP1R37O75864 691 aa13.01□□□□□ -0.33
VPS50-206ENST00000443443 DNAJC5Q9H3Z4 198 aa13□□□□□ -0.33
VPS50-206ENST00000443443 CDAN1Q8IWY9 1227 aa12.99□□□□□ -0.33
VPS50-206ENST00000443443 SNPHO15079 494 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms