RNA–Protein interactions for RNA: ENST00000438066.1

SPEN-202, Transcript of spen family transcriptional repressor, humanhuman

TSL 3

Gene SPEN, Length 1,733 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPEN-202ENST00000438066 TIMELESSQ9UNS1 1208 aa12.12□□□□□ -0.47
SPEN-202ENST00000438066 NKX1-1Q15270 411 aaPredicted RBP12.11□□□□□ -0.47
SPEN-202ENST00000438066 TULP1O00294 542 aaPredicted RBP12.1□□□□□ -0.47
SPEN-202ENST00000438066 GSE1Q14687 1217 aa12.09□□□□□ -0.47
SPEN-202ENST00000438066 GTPBP6O43824 516 aaPredicted RBP12.06□□□□□ -0.48
SPEN-202ENST00000438066 RIOK3O14730 519 aaKnown RBP12.04□□□□□ -0.48
SPEN-202ENST00000438066 GTF3C3Q9Y5Q9 886 aa12.04□□□□□ -0.48
SPEN-202ENST00000438066 DCAF8Q5TAQ9 597 aa12.02□□□□□ -0.49
SPEN-202ENST00000438066 STK25O00506 426 aa12.01□□□□□ -0.49
SPEN-202ENST00000438066 NUBP1P53384 320 aa12.01□□□□□ -0.49
SPEN-202ENST00000438066 VGFO15240 615 aaPredicted RBP11.93□□□□□ -0.5
SPEN-202ENST00000438066 FAM212AQ96EL1 285 aa11.89□□□□□ -0.51
SPEN-202ENST00000438066 STK24Q9Y6E0 443 aa11.89□□□□□ -0.51
SPEN-202ENST00000438066 BCL11BQ9C0K0 894 aaPredicted RBP11.88□□□□□ -0.51
SPEN-202ENST00000438066 TMEM132AQ24JP5 1023 aa11.86□□□□□ -0.51
SPEN-202ENST00000438066 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.85□□□□□ -0.51
SPEN-202ENST00000438066 ZFP91Q96JP5 570 aaPredicted RBP11.85□□□□□ -0.51
SPEN-202ENST00000438066 RYDENQ9NUL5 291 aaKnown RBP11.83□□□□□ -0.52
SPEN-202ENST00000438066 ERICH6Q7L0X2 663 aa11.81□□□□□ -0.52
SPEN-202ENST00000438066 P3H3Q8IVL6 736 aa11.81□□□□□ -0.52
SPEN-202ENST00000438066 CHRM1P11229 460 aaPredicted RBP11.8□□□□□ -0.52
SPEN-202ENST00000438066 SGIP1Q9BQI5 828 aa11.8□□□□□ -0.52
SPEN-202ENST00000438066 RASEFQ8IZ41 740 aa11.79□□□□□ -0.52
SPEN-202ENST00000438066 CREBZFQ9NS37 354 aa11.78□□□□□ -0.52
SPEN-202ENST00000438066 PYGBP11216 843 aa11.77□□□□□ -0.52
SPEN-202ENST00000438066 MNX1P50219 401 aaPredicted RBP11.77□□□□□ -0.52
SPEN-202ENST00000438066 SPDYE1Q8NFV5 336 aaPredicted RBP11.77□□□□□ -0.53
SPEN-202ENST00000438066 ARXQ96QS3 562 aa11.76□□□□□ -0.53
SPEN-202ENST00000438066 CLEC11AQ9Y240 323 aa11.76□□□□□ -0.53
SPEN-202ENST00000438066 PRR29P0C7W0 189 aa11.73□□□□□ -0.53
SPEN-202ENST00000438066 LMOD2Q6P5Q4 547 aa11.73□□□□□ -0.53
SPEN-202ENST00000438066 KCNV2Q8TDN2 545 aa11.73□□□□□ -0.53
SPEN-202ENST00000438066 WDR70Q9NW82 654 aa11.72□□□□□ -0.53
SPEN-202ENST00000438066 C14orf37Q86TY3 774 aa11.72□□□□□ -0.53
SPEN-202ENST00000438066 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.71□□□□□ -0.54
SPEN-202ENST00000438066 CADPS2Q86UW7 1296 aa11.7□□□□□ -0.54
SPEN-202ENST00000438066 CCDC180Q9P1Z9 1646 aa11.68□□□□□ -0.54
SPEN-202ENST00000438066 AKT1S1Q96B36 256 aa11.61□□□□□ -0.55
SPEN-202ENST00000438066 BRPF1P55201 1214 aaPredicted RBP11.6□□□□□ -0.55
SPEN-202ENST00000438066 DAXXQ9UER7 740 aaPredicted RBP11.59□□□□□ -0.55
SPEN-202ENST00000438066 HOMEZQ8IX15 550 aa11.55□□□□□ -0.56
SPEN-202ENST00000438066 REM2Q8IYK8 340 aaPredicted RBP11.55□□□□□ -0.56
SPEN-202ENST00000438066 RBM42Q9BTD8 480 aaKnown RBP11.55□□□□□ -0.56
SPEN-202ENST00000438066 ZNF467Q7Z7K2 595 aaPredicted RBP11.54□□□□□ -0.56
SPEN-202ENST00000438066 CACNB1Q02641 598 aaPredicted RBP11.53□□□□□ -0.56
SPEN-202ENST00000438066 ZC3H15Q8WU90 426 aaKnown RBP11.53□□□□□ -0.56
SPEN-202ENST00000438066 PDAP1Q13442 181 aaKnown RBP11.52□□□□□ -0.57
SPEN-202ENST00000438066 NEUROD2Q15784 382 aa11.52□□□□□ -0.57
SPEN-202ENST00000438066 MFRPQ9BY79 579 aa11.51□□□□□ -0.57
SPEN-202ENST00000438066 TSPYL2Q9H2G4 693 aaPredicted RBP11.51□□□□□ -0.57
SPEN-202ENST00000438066 ARHGEF1Q92888 912 aaKnown RBP11.5□□□□□ -0.57
SPEN-202ENST00000438066 PCDHB8Q9UN66 801 aa11.49□□□□□ -0.57
SPEN-202ENST00000438066 PCDHB13Q9Y5F0 798 aa11.49□□□□□ -0.57
SPEN-202ENST00000438066 SLC24A3Q9HC58 644 aa11.48□□□□□ -0.57
SPEN-202ENST00000438066 SEMA3EO15041 775 aa11.47□□□□□ -0.57
SPEN-202ENST00000438066 E2F4Q16254 413 aa11.46□□□□□ -0.57
SPEN-202ENST00000438066 PPP1R37O75864 691 aa11.44□□□□□ -0.58
SPEN-202ENST00000438066 SUPT5HO00267 1087 aaKnown RBP11.43□□□□□ -0.58
SPEN-202ENST00000438066 PSEN1P49768 467 aa11.43□□□□□ -0.58
SPEN-202ENST00000438066 TESPA1A2RU30 521 aaPredicted RBP11.42□□□□□ -0.58
SPEN-202ENST00000438066 PITPNM1O00562 1244 aa11.42□□□□□ -0.58
SPEN-202ENST00000438066 CHADLQ6NUI6 762 aa11.39□□□□□ -0.59
SPEN-202ENST00000438066 EFCAB3Q8N7B9 438 aa11.35□□□□□ -0.59
SPEN-202ENST00000438066 ZNF579Q8NAF0 562 aaKnown RBP11.35□□□□□ -0.59
SPEN-202ENST00000438066 FBXO22Q8NEZ5 403 aa11.35□□□□□ -0.59
SPEN-202ENST00000438066 ZMYND10O75800 440 aa11.34□□□□□ -0.59
SPEN-202ENST00000438066 NLRP6P59044 892 aa11.33□□□□□ -0.6
SPEN-202ENST00000438066 PHF8Q9UPP1 1060 aa11.33□□□□□ -0.6
SPEN-202ENST00000438066 CCDC61Q9Y6R9 512 aa11.33□□□□□ -0.6
SPEN-202ENST00000438066 CABP2Q9NPB3 220 aa11.32□□□□□ -0.6
SPEN-202ENST00000438066 FARP1Q9Y4F1 1045 aaPredicted RBP11.31□□□□□ -0.6
SPEN-202ENST00000438066 NCKAP5LQ9HCH0 1330 aa11.3□□□□□ -0.6
SPEN-202ENST00000438066 SMYD5Q6GMV2 418 aa11.3□□□□□ -0.6
SPEN-202ENST00000438066 LARP6Q9BRS8 491 aaKnown RBP11.29□□□□□ -0.6
SPEN-202ENST00000438066 ZCCHC6Q5VYS8 1495 aaKnown RBP11.29□□□□□ -0.6
SPEN-202ENST00000438066 SOX12O15370 315 aa11.28□□□□□ -0.6
SPEN-202ENST00000438066 IFNL1Q8IU54 200 aa11.28□□□□□ -0.6
SPEN-202ENST00000438066 BARGINQ6ZT62 677 aa11.24□□□□□ -0.61
SPEN-202ENST00000438066 PDE4AP27815 886 aa11.23□□□□□ -0.61
SPEN-202ENST00000438066 GPBP1L1Q9HC44 474 aaPredicted RBP11.22□□□□□ -0.61
SPEN-202ENST00000438066 MAP3K13O43283 966 aa11.21□□□□□ -0.62
SPEN-202ENST00000438066 MFSD10Q14728 455 aa11.21□□□□□ -0.62
SPEN-202ENST00000438066 DDX27Q96GQ7 796 aaKnown RBP11.21□□□□□ -0.62
SPEN-202ENST00000438066 RBM26Q5T8P6 1007 aaKnown RBP11.19□□□□□ -0.62
SPEN-202ENST00000438066 AK7Q96M32 723 aa11.18□□□□□ -0.62
SPEN-202ENST00000438066 CRISPLD2Q9H0B8 497 aa11.18□□□□□ -0.62
SPEN-202ENST00000438066 IL27Q8NEV9 243 aa11.18□□□□□ -0.62
SPEN-202ENST00000438066 ARIH1Q9Y4X5 557 aaPredicted RBP11.18□□□□□ -0.62
SPEN-202ENST00000438066 KRI1Q8N9T8 703 aaKnown RBP11.17□□□□□ -0.62
SPEN-202ENST00000438066 MS4A4AQ96JQ5 239 aa11.17□□□□□ -0.62
SPEN-202ENST00000438066 GPIHBP1Q8IV16 184 aa11.16□□□□□ -0.62
SPEN-202ENST00000438066 PAK3O75914 559 aaPredicted RBP11.15□□□□□ -0.62
SPEN-202ENST00000438066 MLLT3P42568 568 aaPredicted RBP11.15□□□□□ -0.62
SPEN-202ENST00000438066 KIF12Q96FN5 646 aa11.15□□□□□ -0.62
SPEN-202ENST00000438066 PRKAR2AP13861 404 aaKnown RBP11.15□□□□□ -0.63
SPEN-202ENST00000438066 CAMK2BQ13554 666 aa11.13□□□□□ -0.63
SPEN-202ENST00000438066 KDM4CQ9H3R0 1056 aa11.12□□□□□ -0.63
SPEN-202ENST00000438066 UBTFP17480 764 aaKnown RBP11.1□□□□□ -0.63
SPEN-202ENST00000438066 DCAF1Q9Y4B6 1507 aa11.1□□□□□ -0.63
SPEN-202ENST00000438066 ZMYND15Q9H091 742 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms