RNA–Protein interactions for RNA: ENST00000435607.3

SCN4A-201, Transcript of sodium voltage-gated channel alpha subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN4A, Length 7,805 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4A-201ENST00000435607 CHMP7Q8WUX9 453 aaPredicted RBP14.72□□□□□ -0.05
SCN4A-201ENST00000435607 BECN1Q14457 450 aa14.72□□□□□ -0.05
SCN4A-201ENST00000435607 CFAP53Q96M91 514 aa14.71□□□□□ -0.05
SCN4A-201ENST00000435607 TRIM44Q96DX7 344 aaPredicted RBP14.7□□□□□ -0.06
SCN4A-201ENST00000435607 KDM2AQ9Y2K7 1162 aa14.69□□□□□ -0.06
SCN4A-201ENST00000435607 NCBP3Q53F19 620 aaKnown RBP14.68□□□□□ -0.06
SCN4A-201ENST00000435607 CSRNP3Q8WYN3 585 aa14.67□□□□□ -0.06
SCN4A-201ENST00000435607 LMOD2Q6P5Q4 547 aa14.67□□□□□ -0.06
SCN4A-201ENST00000435607 TNNT2P45379 298 aaPredicted RBP14.66□□□□□ -0.06
SCN4A-201ENST00000435607 GOLGA6L6A8MZA4 724 aa14.66□□□□□ -0.06
SCN4A-201ENST00000435607 ACIN1Q9UKV3 1341 aaKnown RBP14.66□□□□□ -0.06
SCN4A-201ENST00000435607 CLSTN1O94985 981 aa14.65□□□□□ -0.06
SCN4A-201ENST00000435607 CDCA8Q53HL2 280 aa14.65□□□□□ -0.06
SCN4A-201ENST00000435607 FKBP8Q14318 412 aa14.63□□□□□ -0.07
SCN4A-201ENST00000435607 NRDCO43847 1150 aa14.62□□□□□ -0.07
SCN4A-201ENST00000435607 PTMAP06454 111 aaKnown RBP14.62□□□□□ -0.07
SCN4A-201ENST00000435607 FGD1P98174 961 aa14.61□□□□□ -0.07
SCN4A-201ENST00000435607 TMX4Q9H1E5 349 aaPredicted RBP14.61□□□□□ -0.07
SCN4A-201ENST00000435607 DDRGK1Q96HY6 314 aa14.61□□□□□ -0.07
SCN4A-201ENST00000435607 CHMP4BQ9H444 224 aaKnown RBP14.6□□□□□ -0.07
SCN4A-201ENST00000435607 CHIC2Q9UKJ5 165 aa14.6□□□□□ -0.07
SCN4A-201ENST00000435607 L1TD1Q5T7N2 865 aaKnown RBP14.59□□□□□ -0.07
SCN4A-201ENST00000435607 PPM1GO15355 546 aaPredicted RBP14.57□□□□□ -0.08
SCN4A-201ENST00000435607 MTUS2Q5JR59 1369 aa14.57□□□□□ -0.08
SCN4A-201ENST00000435607 OS9Q13438 667 aaPredicted RBP14.57□□□□□ -0.08
SCN4A-201ENST00000435607 FTSJ3Q8IY81 847 aaKnown RBP14.57□□□□□ -0.08
SCN4A-201ENST00000435607 KCNH8Q96L42 1107 aa14.57□□□□□ -0.08
SCN4A-201ENST00000435607 HDGFP51858 240 aaKnown RBP14.57□□□□□ -0.08
SCN4A-201ENST00000435607 MRS2Q9HD23 443 aa14.56□□□□□ -0.08
SCN4A-201ENST00000435607 DNTTIP2Q5QJE6 756 aaKnown RBP14.55□□□□□ -0.08
SCN4A-201ENST00000435607 PNNQ9H307 717 aaKnown RBP14.55□□□□□ -0.08
SCN4A-201ENST00000435607 SENP3Q9H4L4 574 aaPredicted RBP14.55□□□□□ -0.08
SCN4A-201ENST00000435607 NUDCQ9Y266 331 aa14.55□□□□□ -0.08
SCN4A-201ENST00000435607 MAPK8IP3Q9UPT6 1336 aa14.55□□□□□ -0.08
SCN4A-201ENST00000435607 ISY1Q9ULR0 285 aaKnown RBP14.54□□□□□ -0.08
SCN4A-201ENST00000435607 KCNJ4P48050 445 aa14.53□□□□□ -0.08
SCN4A-201ENST00000435607 DDX10Q13206 875 aaKnown RBP14.53□□□□□ -0.08
SCN4A-201ENST00000435607 PLEKHD1A6NEE1 506 aa14.53□□□□□ -0.08
SCN4A-201ENST00000435607 POGKQ9P215 609 aa14.53□□□□□ -0.08
SCN4A-201ENST00000435607 TRHP20396 242 aaPredicted RBP14.53□□□□□ -0.08
SCN4A-201ENST00000435607 PRM3Q9NNZ6 103 aa14.51□□□□□ -0.09
SCN4A-201ENST00000435607 KNSTRNQ9Y448 316 aa14.51□□□□□ -0.09
SCN4A-201ENST00000435607 NAP1L2Q9ULW6 460 aaPredicted RBP14.5□□□□□ -0.09
SCN4A-201ENST00000435607 TAOK2Q9UL54 1235 aa14.49□□□□□ -0.09
SCN4A-201ENST00000435607 NBR1Q14596 966 aa14.49□□□□□ -0.09
SCN4A-201ENST00000435607 LAS1LQ9Y4W2 734 aaKnown RBP14.48□□□□□ -0.09
SCN4A-201ENST00000435607 KIAA2012Q0VF49 1180 aa14.48□□□□□ -0.09
SCN4A-201ENST00000435607 MS4A1P11836 297 aa14.47□□□□□ -0.09
SCN4A-201ENST00000435607 CHAF1AQ13111 956 aaPredicted RBP14.47□□□□□ -0.09
SCN4A-201ENST00000435607 KRI1Q8N9T8 703 aaKnown RBP14.45□□□□□ -0.1
SCN4A-201ENST00000435607 GOLGA6L4A6NEF3 574 aa14.44□□□□□ -0.1
SCN4A-201ENST00000435607 TPRNQ4KMQ1 711 aa14.43□□□□□ -0.1
SCN4A-201ENST00000435607 RSF1Q96T23 1441 aaPredicted RBP14.43□□□□□ -0.1
SCN4A-201ENST00000435607 GNL2Q13823 731 aaKnown RBP14.4□□□□□ -0.1
SCN4A-201ENST00000435607 PLCB2Q00722 1185 aa14.4□□□□□ -0.1
SCN4A-201ENST00000435607 RGL3Q3MIN7 710 aa14.4□□□□□ -0.1
SCN4A-201ENST00000435607 CFAP44Q96MT7 982 aa14.39□□□□□ -0.11
SCN4A-201ENST00000435607 MCCP23508 829 aa14.39□□□□□ -0.11
SCN4A-201ENST00000435607 G3V3G9 751 aa14.38□□□□□ -0.11
SCN4A-201ENST00000435607 DCAF8Q5TAQ9 597 aa14.38□□□□□ -0.11
SCN4A-201ENST00000435607 HSP90AB1P08238 724 aaKnown RBP14.35□□□□□ -0.11
SCN4A-201ENST00000435607 KANK1Q14678 1352 aa14.35□□□□□ -0.11
SCN4A-201ENST00000435607 NOC3LQ8WTT2 800 aaKnown RBP14.35□□□□□ -0.11
SCN4A-201ENST00000435607 SCRIBQ14160 1630 aa14.35□□□□□ -0.11
SCN4A-201ENST00000435607 CHMP4AQ9BY43 222 aa14.34□□□□□ -0.11
SCN4A-201ENST00000435607 RTF1Q92541 710 aaKnown RBP14.34□□□□□ -0.11
SCN4A-201ENST00000435607 RRP7BPQ9NSQ0 103 aa14.32□□□□□ -0.12
SCN4A-201ENST00000435607 CFDP1Q9UEE9 299 aaPredicted RBP14.31□□□□□ -0.12
SCN4A-201ENST00000435607 CCDC9Q9Y3X0 531 aaKnown RBP14.31□□□□□ -0.12
SCN4A-201ENST00000435607 U2SURPO15042 1029 aaKnown RBP14.31□□□□□ -0.12
SCN4A-201ENST00000435607 CCDC34Q96HJ3 373 aa14.31□□□□□ -0.12
SCN4A-201ENST00000435607 NEUROD2Q15784 382 aa14.3□□□□□ -0.12
SCN4A-201ENST00000435607 ERCC6Q03468 1493 aa14.3□□□□□ -0.12
SCN4A-201ENST00000435607 CSB-PGBD3P0DP91 1061 aa14.28□□□□□ -0.12
SCN4A-201ENST00000435607 ERICH6BQ5W0A0 696 aa14.28□□□□□ -0.12
SCN4A-201ENST00000435607 CARD11Q9BXL7 1154 aa14.28□□□□□ -0.12
SCN4A-201ENST00000435607 DRC7Q8IY82 874 aa14.27□□□□□ -0.12
SCN4A-201ENST00000435607 KIAA1211Q6ZU35 1233 aa14.27□□□□□ -0.13
SCN4A-201ENST00000435607 HTATSF1O43719 755 aaKnown RBP14.26□□□□□ -0.13
SCN4A-201ENST00000435607 CEP89Q96ST8 783 aa14.25□□□□□ -0.13
SCN4A-201ENST00000435607 DCAF8L1A6NGE4 600 aa14.25□□□□□ -0.13
SCN4A-201ENST00000435607 FRAT1Q92837 279 aaPredicted RBP14.25□□□□□ -0.13
SCN4A-201ENST00000435607 MLECQ14165 292 aa14.24□□□□□ -0.13
SCN4A-201ENST00000435607 SRPK2P78362 688 aaKnown RBP14.23□□□□□ -0.13
SCN4A-201ENST00000435607 HDAC5Q9UQL6 1122 aa14.23□□□□□ -0.13
SCN4A-201ENST00000435607 TAF7LQ5H9L4 462 aa14.22□□□□□ -0.13
SCN4A-201ENST00000435607 GORABQ5T7V8 394 aa14.22□□□□□ -0.13
SCN4A-201ENST00000435607 SOX12O15370 315 aa14.22□□□□□ -0.13
SCN4A-201ENST00000435607 ZNF330Q9Y3S2 320 aaPredicted RBP14.22□□□□□ -0.13
SCN4A-201ENST00000435607 HSCBQ8IWL3 235 aa14.21□□□□□ -0.13
SCN4A-201ENST00000435607 USP35Q9P2H5 1018 aa14.21□□□□□ -0.13
SCN4A-201ENST00000435607 PAK3O75914 559 aaPredicted RBP14.21□□□□□ -0.13
SCN4A-201ENST00000435607 CALD1Q05682 793 aaKnown RBP14.21□□□□□ -0.13
SCN4A-201ENST00000435607 TPM4P67936 248 aa14.21□□□□□ -0.13
SCN4A-201ENST00000435607 IRX6P78412 446 aaPredicted RBP14.2□□□□□ -0.14
SCN4A-201ENST00000435607 A0A0U1RQG5 324 aaPredicted RBP14.2□□□□□ -0.14
SCN4A-201ENST00000435607 GPATCH3Q96I76 525 aa14.19□□□□□ -0.14
SCN4A-201ENST00000435607 HDGFL2Q7Z4V5 671 aaPredicted RBP14.19□□□□□ -0.14
SCN4A-201ENST00000435607 TMF1P82094 1093 aa14.17□□□□□ -0.14
SCN4A-201ENST00000435607 NAP1L5Q96NT1 182 aaPredicted RBP14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms