RNA–Protein interactions for RNA: ENST00000431283.1

PTPN4-204, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 630 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-204ENST00000431283 FAM212AQ96EL1 285 aa15.34■□□□□ 0.05
PTPN4-204ENST00000431283 CCDC61Q9Y6R9 512 aa15.32■□□□□ 0.04
PTPN4-204ENST00000431283 GALR2O43603 387 aaPredicted RBP15.31■□□□□ 0.04
PTPN4-204ENST00000431283 NUBP1P53384 320 aa15.31■□□□□ 0.04
PTPN4-204ENST00000431283 DCAF8Q5TAQ9 597 aa15.24■□□□□ 0.03
PTPN4-204ENST00000431283 MS4A3Q96HJ5 214 aa15.22■□□□□ 0.03
PTPN4-204ENST00000431283 KIF12Q96FN5 646 aa15.21■□□□□ 0.03
PTPN4-204ENST00000431283 MAP3K13O43283 966 aa15.16■□□□□ 0.02
PTPN4-204ENST00000431283 POTEIP0CG38 1075 aa15.16■□□□□ 0.02
PTPN4-204ENST00000431283 SPOCK2Q92563 424 aa15.15■□□□□ 0.02
PTPN4-204ENST00000431283 GSE1Q14687 1217 aa15.14■□□□□ 0.01
PTPN4-204ENST00000431283 IFNLR1Q8IU57 520 aaPredicted RBP15.14■□□□□ 0.01
PTPN4-204ENST00000431283 PCDHB13Q9Y5F0 798 aa15.11■□□□□ 0.01
PTPN4-204ENST00000431283 SGIP1Q9BQI5 828 aa15.09■□□□□ 0.01
PTPN4-204ENST00000431283 PYGBP11216 843 aa15.06■□□□□ 0
PTPN4-204ENST00000431283 CIZ1Q9ULV3 898 aaPredicted RBP15.03■□□□□ -0
PTPN4-204ENST00000431283 ASTLQ6HA08 431 aaPredicted RBP15.02■□□□□ -0
PTPN4-204ENST00000431283 ATMINO43313 823 aaPredicted RBP15.01□□□□□ -0.01
PTPN4-204ENST00000431283 LHX8Q68G74 356 aa15□□□□□ -0.01
PTPN4-204ENST00000431283 TIE1P35590 1138 aa14.99□□□□□ -0.01
PTPN4-204ENST00000431283 IFNL1Q8IU54 200 aa14.98□□□□□ -0.01
PTPN4-204ENST00000431283 BMP2KQ9NSY1 1161 aaPredicted RBP14.96□□□□□ -0.01
PTPN4-204ENST00000431283 TRPC6Q9Y210 931 aa14.96□□□□□ -0.01
PTPN4-204ENST00000431283 SLC39A7Q92504 469 aa14.94□□□□□ -0.02
PTPN4-204ENST00000431283 ATN1P54259 1190 aaPredicted RBP14.93□□□□□ -0.02
PTPN4-204ENST00000431283 PELP1Q8IZL8 1130 aaKnown RBP14.93□□□□□ -0.02
PTPN4-204ENST00000431283 C7P10643 843 aa14.92□□□□□ -0.02
PTPN4-204ENST00000431283 METRNQ9UJH8 293 aa14.91□□□□□ -0.02
PTPN4-204ENST00000431283 TTLL13PA6NNM8 815 aa14.9□□□□□ -0.02
PTPN4-204ENST00000431283 ZNF467Q7Z7K2 595 aaPredicted RBP14.9□□□□□ -0.02
PTPN4-204ENST00000431283 CHRM1P11229 460 aaPredicted RBP14.89□□□□□ -0.03
PTPN4-204ENST00000431283 TMEM106CQ9BVX2 250 aa14.89□□□□□ -0.03
PTPN4-204ENST00000431283 PCDHB8Q9UN66 801 aa14.88□□□□□ -0.03
PTPN4-204ENST00000431283 TRIM41Q8WV44 630 aa14.85□□□□□ -0.03
PTPN4-204ENST00000431283 TRIM35Q9UPQ4 493 aa14.83□□□□□ -0.04
PTPN4-204ENST00000431283 SEC24BO95487 1268 aa14.8□□□□□ -0.04
PTPN4-204ENST00000431283 IER5LQ5T953 404 aa14.75□□□□□ -0.05
PTPN4-204ENST00000431283 GOLGA2Q08379 1002 aa14.74□□□□□ -0.05
PTPN4-204ENST00000431283 PSEN1P49768 467 aa14.72□□□□□ -0.05
PTPN4-204ENST00000431283 PDAP1Q13442 181 aaKnown RBP14.71□□□□□ -0.05
PTPN4-204ENST00000431283 POTEB2H3BUK9 544 aa14.67□□□□□ -0.06
PTPN4-204ENST00000431283 MAMSTRQ6ZN01 415 aa14.67□□□□□ -0.06
PTPN4-204ENST00000431283 PLCG2P16885 1265 aa14.66□□□□□ -0.06
PTPN4-204ENST00000431283 MKRN3Q13064 507 aaKnown RBP14.65□□□□□ -0.06
PTPN4-204ENST00000431283 COLQQ9Y215 455 aaPredicted RBP14.63□□□□□ -0.07
PTPN4-204ENST00000431283 SCUBE2Q9NQ36 999 aa14.62□□□□□ -0.07
PTPN4-204ENST00000431283 OTUD5Q96G74 571 aa14.6□□□□□ -0.07
PTPN4-204ENST00000431283 POTEFA5A3E0 1075 aa14.59□□□□□ -0.07
PTPN4-204ENST00000431283 RIOK3O14730 519 aaKnown RBP14.59□□□□□ -0.07
PTPN4-204ENST00000431283 OCEL1Q9H607 264 aa14.58□□□□□ -0.08
PTPN4-204ENST00000431283 ECM2O94769 699 aaPredicted RBP14.56□□□□□ -0.08
PTPN4-204ENST00000431283 IRX5P78411 483 aaPredicted RBP14.56□□□□□ -0.08
PTPN4-204ENST00000431283 TAOK2Q9UL54 1235 aa14.56□□□□□ -0.08
PTPN4-204ENST00000431283 CABP2Q9NPB3 220 aa14.55□□□□□ -0.08
PTPN4-204ENST00000431283 VGFO15240 615 aaPredicted RBP14.52□□□□□ -0.09
PTPN4-204ENST00000431283 POTEJP0CG39 1038 aa14.52□□□□□ -0.09
PTPN4-204ENST00000431283 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.51□□□□□ -0.096e-7■■□□□ 12.2
PTPN4-204ENST00000431283 RNF25Q96BH1 459 aaPredicted RBP14.48□□□□□ -0.09
PTPN4-204ENST00000431283 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.44□□□□□ -0.1
PTPN4-204ENST00000431283 ZFP91Q96JP5 570 aaPredicted RBP14.44□□□□□ -0.1
PTPN4-204ENST00000431283 PKD2Q13563 968 aa14.43□□□□□ -0.1
PTPN4-204ENST00000431283 L3MBTL3Q96JM7 780 aaPredicted RBP14.41□□□□□ -0.1
PTPN4-204ENST00000431283 PDCD7Q8N8D1 485 aaKnown RBP14.4□□□□□ -0.1
PTPN4-204ENST00000431283 G3V3G9 751 aa14.39□□□□□ -0.11
PTPN4-204ENST00000431283 EFCAB3Q8N7B9 438 aa14.38□□□□□ -0.11
PTPN4-204ENST00000431283 C3orf67Q6ZVT6 689 aa14.35□□□□□ -0.11
PTPN4-204ENST00000431283 SLAIN1Q8ND83 568 aa14.35□□□□□ -0.11
PTPN4-204ENST00000431283 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.35□□□□□ -0.11
PTPN4-204ENST00000431283 STK25O00506 426 aa14.34□□□□□ -0.11
PTPN4-204ENST00000431283 RGL2O15211 777 aa14.34□□□□□ -0.11
PTPN4-204ENST00000431283 BCL11BQ9C0K0 894 aaPredicted RBP14.34□□□□□ -0.11
PTPN4-204ENST00000431283 STK24Q9Y6E0 443 aa14.34□□□□□ -0.11
PTPN4-204ENST00000431283 SOX12O15370 315 aa14.31□□□□□ -0.12
PTPN4-204ENST00000431283 ILDR1Q86SU0 546 aaPredicted RBP14.3□□□□□ -0.12
PTPN4-204ENST00000431283 DPY19L2Q6NUT2 758 aa14.27□□□□□ -0.13
PTPN4-204ENST00000431283 BOLA1Q9Y3E2 137 aa14.26□□□□□ -0.13
PTPN4-204ENST00000431283 FAM163AQ96GL9 167 aaPredicted RBP14.24□□□□□ -0.13
PTPN4-204ENST00000431283 NLRP6P59044 892 aa14.21□□□□□ -0.13
PTPN4-204ENST00000431283 PHF8Q9UPP1 1060 aa14.21□□□□□ -0.13
PTPN4-204ENST00000431283 SNPHO15079 494 aa14.17□□□□□ -0.14
PTPN4-204ENST00000431283 MS4A4AQ96JQ5 239 aa14.11□□□□□ -0.15
PTPN4-204ENST00000431283 POTEMA6NI47 508 aa14.1□□□□□ -0.15
PTPN4-204ENST00000431283 CHGAP10645 457 aaKnown RBP14.1□□□□□ -0.15
PTPN4-204ENST00000431283 POTEGQ6S5H5 508 aa14.09□□□□□ -0.15
PTPN4-204ENST00000431283 MICALL2Q8IY33 904 aa14.09□□□□□ -0.15
PTPN4-204ENST00000431283 TMEM121BQ9BXQ6 578 aaPredicted RBP14.08□□□□□ -0.16
PTPN4-204ENST00000431283 MFRPQ9BY79 579 aa14.08□□□□□ -0.16
PTPN4-204ENST00000431283 HS6ST3Q8IZP7 471 aa14.07□□□□□ -0.16
PTPN4-204ENST00000431283 FBXO22Q8NEZ5 403 aa14.07□□□□□ -0.16
PTPN4-204ENST00000431283 DCAF8L2P0C7V8 631 aa14.06□□□□□ -0.16
PTPN4-204ENST00000431283 ST18O60284 1047 aa14.01□□□□□ -0.17
PTPN4-204ENST00000431283 LCE2DQ5TA82 110 aaPredicted RBP13.99□□□□□ -0.17
PTPN4-204ENST00000431283 ZNF710Q8N1W2 664 aa13.93□□□□□ -0.18
PTPN4-204ENST00000431283 RYDENQ9NUL5 291 aaKnown RBP13.93□□□□□ -0.18
PTPN4-204ENST00000431283 DOK7Q18PE1 504 aa13.92□□□□□ -0.18
PTPN4-204ENST00000431283 RIMBP2O15034 1052 aa13.91□□□□□ -0.18
PTPN4-204ENST00000431283 PCDH10Q9P2E7 1040 aa13.91□□□□□ -0.18
PTPN4-204ENST00000431283 AMER1Q5JTC6 1135 aaPredicted RBP13.89□□□□□ -0.19
PTPN4-204ENST00000431283 TMEM92Q6UXU6 159 aa13.87□□□□□ -0.19
PTPN4-204ENST00000431283 DNAJC5Q9H3Z4 198 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms