RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 PAK3O75914 559 aaPredicted RBP15.61■□□□□ 0.09
CCDC88A-206ENST00000430086 ECM2O94769 699 aaPredicted RBP15.6■□□□□ 0.09
CCDC88A-206ENST00000430086 CD44P16070 742 aaKnown RBP15.59■□□□□ 0.09
CCDC88A-206ENST00000430086 CHRM1P11229 460 aaPredicted RBP15.56■□□□□ 0.08
CCDC88A-206ENST00000430086 CCDC61Q9Y6R9 512 aa15.56■□□□□ 0.08
CCDC88A-206ENST00000430086 ZRANB1Q9UGI0 708 aa15.52■□□□□ 0.08
CCDC88A-206ENST00000430086 HAX1O00165 279 aa15.5■□□□□ 0.07
CCDC88A-206ENST00000430086 PYGBP11216 843 aa15.48■□□□□ 0.07
CCDC88A-206ENST00000430086 RGL2O15211 777 aa15.45■□□□□ 0.06
CCDC88A-206ENST00000430086 ZNF579Q8NAF0 562 aaKnown RBP15.43■□□□□ 0.06
CCDC88A-206ENST00000430086 RNF25Q96BH1 459 aaPredicted RBP15.4■□□□□ 0.06
CCDC88A-206ENST00000430086 EVX2Q03828 476 aa15.39■□□□□ 0.05
CCDC88A-206ENST00000430086 KIF12Q96FN5 646 aa15.39■□□□□ 0.05
CCDC88A-206ENST00000430086 SGIP1Q9BQI5 828 aa15.38■□□□□ 0.05
CCDC88A-206ENST00000430086 PHF12Q96QT6 1004 aa15.37■□□□□ 0.05
CCDC88A-206ENST00000430086 RIOK3O14730 519 aaKnown RBP15.36■□□□□ 0.05
CCDC88A-206ENST00000430086 MAP3K13O43283 966 aa15.33■□□□□ 0.04
CCDC88A-206ENST00000430086 ZNF467Q7Z7K2 595 aaPredicted RBP15.33■□□□□ 0.04
CCDC88A-206ENST00000430086 TAOK2Q9UL54 1235 aa15.31■□□□□ 0.04
CCDC88A-206ENST00000430086 PCDHB13Q9Y5F0 798 aa15.31■□□□□ 0.04
CCDC88A-206ENST00000430086 DCAF8L2P0C7V8 631 aa15.3■□□□□ 0.04
CCDC88A-206ENST00000430086 CLCN6P51797 869 aa15.29■□□□□ 0.04
CCDC88A-206ENST00000430086 VGFO15240 615 aaPredicted RBP15.27■□□□□ 0.04
CCDC88A-206ENST00000430086 IFNL1Q8IU54 200 aa15.26■□□□□ 0.03
CCDC88A-206ENST00000430086 PCDHB8Q9UN66 801 aa15.26■□□□□ 0.03
CCDC88A-206ENST00000430086 MS4A3Q96HJ5 214 aa15.21■□□□□ 0.03
CCDC88A-206ENST00000430086 PDAP1Q13442 181 aaKnown RBP15.19■□□□□ 0.02
CCDC88A-206ENST00000430086 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.16■□□□□ 0.02
CCDC88A-206ENST00000430086 HS6ST3Q8IZP7 471 aa15.16■□□□□ 0.02
CCDC88A-206ENST00000430086 ZFP91Q96JP5 570 aaPredicted RBP15.16■□□□□ 0.02
CCDC88A-206ENST00000430086 CHGAP10645 457 aaKnown RBP15.15■□□□□ 0.02
CCDC88A-206ENST00000430086 GALR2O43603 387 aaPredicted RBP15.14■□□□□ 0.01
CCDC88A-206ENST00000430086 PSEN1P49768 467 aa15.14■□□□□ 0.01
CCDC88A-206ENST00000430086 GABBR2O75899 941 aa15.12■□□□□ 0.01
CCDC88A-206ENST00000430086 STK25O00506 426 aa15.11■□□□□ 0.01
CCDC88A-206ENST00000430086 SP7Q8TDD2 431 aaPredicted RBP15.09■□□□□ 0.01
CCDC88A-206ENST00000430086 BCL11BQ9C0K0 894 aaPredicted RBP15.08■□□□□ 0
CCDC88A-206ENST00000430086 DNAJC5Q9H3Z4 198 aa15.08■□□□□ 0
CCDC88A-206ENST00000430086 TRPC6Q9Y210 931 aa15.08■□□□□ 0
CCDC88A-206ENST00000430086 TIE1P35590 1138 aa15.06■□□□□ 0
CCDC88A-206ENST00000430086 BBXQ8WY36 941 aaPredicted RBP15.06■□□□□ 0
CCDC88A-206ENST00000430086 STK24Q9Y6E0 443 aa15.05■□□□□ -0
CCDC88A-206ENST00000430086 TMEM106CQ9BVX2 250 aa15.02■□□□□ -0
CCDC88A-206ENST00000430086 BMP2KQ9NSY1 1161 aaPredicted RBP15□□□□□ -0.01
CCDC88A-206ENST00000430086 TTLL13PA6NNM8 815 aa14.98□□□□□ -0.01
CCDC88A-206ENST00000430086 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.95□□□□□ -0.02
CCDC88A-206ENST00000430086 ASTLQ6HA08 431 aaPredicted RBP14.93□□□□□ -0.02
CCDC88A-206ENST00000430086 CABP2Q9NPB3 220 aa14.93□□□□□ -0.02
CCDC88A-206ENST00000430086 NKX1-1Q15270 411 aaPredicted RBP14.92□□□□□ -0.02
CCDC88A-206ENST00000430086 ATMINO43313 823 aaPredicted RBP14.91□□□□□ -0.02
CCDC88A-206ENST00000430086 DCBLD2Q96PD2 775 aa14.9□□□□□ -0.02
CCDC88A-206ENST00000430086 ATN1P54259 1190 aaPredicted RBP14.88□□□□□ -0.03
CCDC88A-206ENST00000430086 EFCAB3Q8N7B9 438 aa14.88□□□□□ -0.03
CCDC88A-206ENST00000430086 GOLGA2Q08379 1002 aa14.87□□□□□ -0.03
CCDC88A-206ENST00000430086 TRIM35Q9UPQ4 493 aa14.87□□□□□ -0.03
CCDC88A-206ENST00000430086 SOX12O15370 315 aa14.85□□□□□ -0.03
CCDC88A-206ENST00000430086 PLCB2Q00722 1185 aa14.84□□□□□ -0.03
CCDC88A-206ENST00000430086 MKRN3Q13064 507 aaKnown RBP14.83□□□□□ -0.04
CCDC88A-206ENST00000430086 SPRYD3Q8NCJ5 442 aa14.83□□□□□ -0.04
CCDC88A-206ENST00000430086 RYDENQ9NUL5 291 aaKnown RBP14.82□□□□□ -0.04
CCDC88A-206ENST00000430086 GTPBP6O43824 516 aaPredicted RBP14.8□□□□□ -0.04
CCDC88A-206ENST00000430086 POTEIP0CG38 1075 aa14.8□□□□□ -0.04
CCDC88A-206ENST00000430086 PAXIP1Q6ZW49 1069 aaPredicted RBP14.8□□□□□ -0.04
CCDC88A-206ENST00000430086 MFRPQ9BY79 579 aa14.8□□□□□ -0.04
CCDC88A-206ENST00000430086 NLRP6P59044 892 aa14.77□□□□□ -0.05
CCDC88A-206ENST00000430086 IER5LQ5T953 404 aa14.77□□□□□ -0.05
CCDC88A-206ENST00000430086 PELP1Q8IZL8 1130 aaKnown RBP14.76□□□□□ -0.05
CCDC88A-206ENST00000430086 CFAP44Q96MT7 982 aa14.76□□□□□ -0.05
CCDC88A-206ENST00000430086 ILDR1Q86SU0 546 aaPredicted RBP14.75□□□□□ -0.05
CCDC88A-206ENST00000430086 FBXO22Q8NEZ5 403 aa14.75□□□□□ -0.05
CCDC88A-206ENST00000430086 PHF8Q9UPP1 1060 aa14.75□□□□□ -0.05
CCDC88A-206ENST00000430086 SLC39A7Q92504 469 aa14.71□□□□□ -0.05
CCDC88A-206ENST00000430086 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.7□□□□□ -0.062e-8■■■■□ 23.4
CCDC88A-206ENST00000430086 IRX5P78411 483 aaPredicted RBP14.69□□□□□ -0.06
CCDC88A-206ENST00000430086 C7P10643 843 aa14.68□□□□□ -0.06
CCDC88A-206ENST00000430086 MS4A4AQ96JQ5 239 aa14.68□□□□□ -0.06
CCDC88A-206ENST00000430086 OCEL1Q9H607 264 aa14.66□□□□□ -0.06
CCDC88A-206ENST00000430086 PDCD7Q8N8D1 485 aaKnown RBP14.63□□□□□ -0.07
CCDC88A-206ENST00000430086 METRNQ9UJH8 293 aa14.62□□□□□ -0.07
CCDC88A-206ENST00000430086 PLCG2P16885 1265 aa14.61□□□□□ -0.07
CCDC88A-206ENST00000430086 PPP1R37O75864 691 aa14.59□□□□□ -0.07
CCDC88A-206ENST00000430086 SEC24BO95487 1268 aa14.59□□□□□ -0.07
CCDC88A-206ENST00000430086 SLC24A1O60721 1099 aa14.58□□□□□ -0.08
CCDC88A-206ENST00000430086 COLQQ9Y215 455 aaPredicted RBP14.58□□□□□ -0.08
CCDC88A-206ENST00000430086 POTEFA5A3E0 1075 aa14.57□□□□□ -0.08
CCDC88A-206ENST00000430086 HAP1P54257 671 aaPredicted RBP14.57□□□□□ -0.08
CCDC88A-206ENST00000430086 DPY19L2Q6NUT2 758 aa14.55□□□□□ -0.08
CCDC88A-206ENST00000430086 TSHZ2Q9NRE2 1034 aa14.53□□□□□ -0.08
CCDC88A-206ENST00000430086 L3MBTL3Q96JM7 780 aaPredicted RBP14.49□□□□□ -0.09
CCDC88A-206ENST00000430086 TMEM121BQ9BXQ6 578 aaPredicted RBP14.46□□□□□ -0.09
CCDC88A-206ENST00000430086 BOLA1Q9Y3E2 137 aa14.46□□□□□ -0.09
CCDC88A-206ENST00000430086 MICALL2Q8IY33 904 aa14.44□□□□□ -0.1
CCDC88A-206ENST00000430086 VSIG10Q8N0Z9 540 aa14.42□□□□□ -0.1
CCDC88A-206ENST00000430086 G3V3G9 751 aa14.41□□□□□ -0.1
CCDC88A-206ENST00000430086 CADPS2Q86UW7 1296 aa14.4□□□□□ -0.1
CCDC88A-206ENST00000430086 POTEB2H3BUK9 544 aa14.33□□□□□ -0.12
CCDC88A-206ENST00000430086 KDM2AQ9Y2K7 1162 aa14.33□□□□□ -0.12
CCDC88A-206ENST00000430086 CRISPLD2Q9H0B8 497 aa14.3□□□□□ -0.12
CCDC88A-206ENST00000430086 POTEJP0CG39 1038 aa14.29□□□□□ -0.12
CCDC88A-206ENST00000430086 PDE4AP27815 886 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms