RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 HAP1P54257 671 aaPredicted RBP20.47■□□□□ 0.87
PTPRF-206ENST00000429895 KCNH8Q96L42 1107 aa20.47■□□□□ 0.87
PTPRF-206ENST00000429895 SCRIBQ14160 1630 aa20.46■□□□□ 0.87
PTPRF-206ENST00000429895 SENP3-EIF4A1A0A087X0R7 540 aa20.42■□□□□ 0.86
PTPRF-206ENST00000429895 TULP1O00294 542 aaPredicted RBP20.42■□□□□ 0.86
PTPRF-206ENST00000429895 MTUS2Q5JR59 1369 aa20.41■□□□□ 0.86
PTPRF-206ENST00000429895 ARID4BQ4LE39 1312 aaPredicted RBP20.4■□□□□ 0.86
PTPRF-206ENST00000429895 RRP7BPQ9NSQ0 103 aa20.4■□□□□ 0.86
PTPRF-206ENST00000429895 TPRNQ4KMQ1 711 aa20.37■□□□□ 0.85
PTPRF-206ENST00000429895 PPM1GO15355 546 aaPredicted RBP20.36■□□□□ 0.85
PTPRF-206ENST00000429895 RGL3Q3MIN7 710 aa20.36■□□□□ 0.85
PTPRF-206ENST00000429895 NCLP19338 710 aaKnown RBP20.31■□□□□ 0.84
PTPRF-206ENST00000429895 GLIPR1L2Q4G1C9 344 aa20.3■□□□□ 0.84
PTPRF-206ENST00000429895 TAOK2Q9UL54 1235 aa20.29■□□□□ 0.84
PTPRF-206ENST00000429895 LMOD2Q6P5Q4 547 aa20.28■□□□□ 0.84
PTPRF-206ENST00000429895 EIF4G2P78344 907 aaKnown RBP eCLIP20.27■□□□□ 0.842e-6■■■■■ 34.6
PTPRF-206ENST00000429895 LAS1LQ9Y4W2 734 aaKnown RBP20.26■□□□□ 0.83
PTPRF-206ENST00000429895 NPHP1O15259 732 aa20.22■□□□□ 0.83
PTPRF-206ENST00000429895 BECN1Q14457 450 aa20.21■□□□□ 0.83
PTPRF-206ENST00000429895 NEUROD2Q15784 382 aa20.21■□□□□ 0.83
PTPRF-206ENST00000429895 MIER1Q8N108 512 aa20.21■□□□□ 0.83
PTPRF-206ENST00000429895 CFAP53Q96M91 514 aa20.21■□□□□ 0.83
PTPRF-206ENST00000429895 PLEKHD1A6NEE1 506 aa20.19■□□□□ 0.82
PTPRF-206ENST00000429895 ZRSR1Q15695 479 aaKnown RBP20.19■□□□□ 0.82
PTPRF-206ENST00000429895 TRIM44Q96DX7 344 aaPredicted RBP20.17■□□□□ 0.82
PTPRF-206ENST00000429895 FTSJ3Q8IY81 847 aaKnown RBP20.16■□□□□ 0.82
PTPRF-206ENST00000429895 KNSTRNQ9Y448 316 aa20.15■□□□□ 0.82
PTPRF-206ENST00000429895 GOLGA6L22H0YM25 854 aa20.15■□□□□ 0.82
PTPRF-206ENST00000429895 CASC1Q6TDU7 716 aa20.14■□□□□ 0.81
PTPRF-206ENST00000429895 DDRGK1Q96HY6 314 aa20.14■□□□□ 0.81
PTPRF-206ENST00000429895 TNNT2P45379 298 aaPredicted RBP20.13■□□□□ 0.81
PTPRF-206ENST00000429895 PTMAP06454 111 aaKnown RBP20.12■□□□□ 0.81
PTPRF-206ENST00000429895 POGKQ9P215 609 aa20.1■□□□□ 0.81
PTPRF-206ENST00000429895 MAPK8IP3Q9UPT6 1336 aa20.09■□□□□ 0.81
PTPRF-206ENST00000429895 CLIP1P30622 1438 aa20.08■□□□□ 0.8
PTPRF-206ENST00000429895 CARD11Q9BXL7 1154 aa20.07■□□□□ 0.8
PTPRF-206ENST00000429895 OS9Q13438 667 aaPredicted RBP20.05■□□□□ 0.8
PTPRF-206ENST00000429895 CFDP1Q9UEE9 299 aaPredicted RBP20.05■□□□□ 0.8
PTPRF-206ENST00000429895 FRAT1Q92837 279 aaPredicted RBP20.04■□□□□ 0.8
PTPRF-206ENST00000429895 CDCA8Q53HL2 280 aa20.04■□□□□ 0.8
PTPRF-206ENST00000429895 DNTTIP2Q5QJE6 756 aaKnown RBP20.04■□□□□ 0.8
PTPRF-206ENST00000429895 NAP1L2Q9ULW6 460 aaPredicted RBP20.03■□□□□ 0.8
PTPRF-206ENST00000429895 ZCCHC6Q5VYS8 1495 aaKnown RBP20.02■□□□□ 0.8
PTPRF-206ENST00000429895 PLCB2Q00722 1185 aa20.02■□□□□ 0.79
PTPRF-206ENST00000429895 RSF1Q96T23 1441 aaPredicted RBP20.01■□□□□ 0.79
PTPRF-206ENST00000429895 SOX12O15370 315 aa20.01■□□□□ 0.79
PTPRF-206ENST00000429895 U2SURPO15042 1029 aaKnown RBP20■□□□□ 0.79
PTPRF-206ENST00000429895 CC2D1BQ5T0F9 858 aaKnown RBP20■□□□□ 0.79
PTPRF-206ENST00000429895 DCAF1Q9Y4B6 1507 aa20■□□□□ 0.79
PTPRF-206ENST00000429895 NUDCQ9Y266 331 aa19.99■□□□□ 0.79
PTPRF-206ENST00000429895 RGS3P49796 1198 aa19.99■□□□□ 0.79
PTPRF-206ENST00000429895 FGD1P98174 961 aa19.99■□□□□ 0.79
PTPRF-206ENST00000429895 GOLGA2Q08379 1002 aa19.98■□□□□ 0.79
PTPRF-206ENST00000429895 NCBP3Q53F19 620 aaKnown RBP19.98■□□□□ 0.79
PTPRF-206ENST00000429895 SUPT16HQ9Y5B9 1047 aaKnown RBP19.97■□□□□ 0.79
PTPRF-206ENST00000429895 ANP32EQ9BTT0 268 aa19.96■□□□□ 0.79
PTPRF-206ENST00000429895 MLECQ14165 292 aa19.96■□□□□ 0.79
PTPRF-206ENST00000429895 TRHP20396 242 aaPredicted RBP19.95■□□□□ 0.78
PTPRF-206ENST00000429895 KCNJ4P48050 445 aa19.94■□□□□ 0.78
PTPRF-206ENST00000429895 CLSTN1O94985 981 aa19.91■□□□□ 0.78
PTPRF-206ENST00000429895 HSP90AB1P08238 724 aaKnown RBP19.89■□□□□ 0.77
PTPRF-206ENST00000429895 ISY1Q9ULR0 285 aaKnown RBP19.88■□□□□ 0.77
PTPRF-206ENST00000429895 SAFB2Q14151 953 aaKnown RBP eCLIP19.87■□□□□ 0.77
PTPRF-206ENST00000429895 SIN3AQ96ST3 1273 aa19.84■□□□□ 0.77
PTPRF-206ENST00000429895 SRPK2P78362 688 aaKnown RBP19.82■□□□□ 0.76
PTPRF-206ENST00000429895 GOLGA3Q08378 1498 aa19.81■□□□□ 0.76
PTPRF-206ENST00000429895 GOLGA6L6A8MZA4 724 aa19.81■□□□□ 0.76
PTPRF-206ENST00000429895 NAP1L5Q96NT1 182 aaPredicted RBP19.8■□□□□ 0.76
PTPRF-206ENST00000429895 ERCC6Q03468 1493 aa19.8■□□□□ 0.76
PTPRF-206ENST00000429895 CEP162Q5TB80 1403 aa19.79■□□□□ 0.76
PTPRF-206ENST00000429895 RTN4Q9NQC3 1192 aaKnown RBP19.79■□□□□ 0.76
PTPRF-206ENST00000429895 DCAF11Q8TEB1 546 aa19.77■□□□□ 0.76
PTPRF-206ENST00000429895 SPRYD3Q8NCJ5 442 aa19.77■□□□□ 0.76
PTPRF-206ENST00000429895 PNNQ9H307 717 aaKnown RBP19.77■□□□□ 0.75
PTPRF-206ENST00000429895 CHMP4BQ9H444 224 aaKnown RBP19.77■□□□□ 0.75
PTPRF-206ENST00000429895 GOLGA6L4A6NEF3 574 aa19.77■□□□□ 0.75
PTPRF-206ENST00000429895 STK26Q9P289 416 aa19.75■□□□□ 0.75
PTPRF-206ENST00000429895 ZNF330Q9Y3S2 320 aaPredicted RBP19.74■□□□□ 0.75
PTPRF-206ENST00000429895 APBB1O00213 710 aa19.74■□□□□ 0.75
PTPRF-206ENST00000429895 TMF1P82094 1093 aa19.73■□□□□ 0.75
PTPRF-206ENST00000429895 MS4A1P11836 297 aa19.73■□□□□ 0.75
PTPRF-206ENST00000429895 MORC1Q86VD1 984 aa19.72■□□□□ 0.75
PTPRF-206ENST00000429895 PAK3O75914 559 aaPredicted RBP19.71■□□□□ 0.75
PTPRF-206ENST00000429895 RTF1Q92541 710 aaKnown RBP19.71■□□□□ 0.75
PTPRF-206ENST00000429895 PPP4R2Q9NY27 417 aa19.71■□□□□ 0.75
PTPRF-206ENST00000429895 KANK1Q14678 1352 aa19.71■□□□□ 0.75
PTPRF-206ENST00000429895 B4GALNT3Q6L9W6 998 aa19.7■□□□□ 0.74
PTPRF-206ENST00000429895 CCNB3Q8WWL7 1395 aa19.7■□□□□ 0.74
PTPRF-206ENST00000429895 HDGFP51858 240 aaKnown RBP19.69■□□□□ 0.74
PTPRF-206ENST00000429895 HSCBQ8IWL3 235 aa19.69■□□□□ 0.74
PTPRF-206ENST00000429895 EIF4G1Q04637 1599 aaKnown RBP19.68■□□□□ 0.74
PTPRF-206ENST00000429895 GNL2Q13823 731 aaKnown RBP19.67■□□□□ 0.74
PTPRF-206ENST00000429895 GGT6Q6P531 493 aa19.67■□□□□ 0.74
PTPRF-206ENST00000429895 KIF27Q86VH2 1401 aa19.67■□□□□ 0.74
PTPRF-206ENST00000429895 NRDCO43847 1150 aa19.67■□□□□ 0.74
PTPRF-206ENST00000429895 CSB-PGBD3P0DP91 1061 aa19.66■□□□□ 0.74
PTPRF-206ENST00000429895 ERICH6BQ5W0A0 696 aa19.66■□□□□ 0.74
PTPRF-206ENST00000429895 MCCP23508 829 aa19.66■□□□□ 0.74
PTPRF-206ENST00000429895 DRC7Q8IY82 874 aa19.66■□□□□ 0.74
PTPRF-206ENST00000429895 WRNQ14191 1432 aaPredicted RBP eCLIP19.65■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms