RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 TSPYL2Q9H2G4 693 aaPredicted RBP10.8□□□□□ -0.68
USP40-204ENST00000427947 PYGBP11216 843 aa10.75□□□□□ -0.69
USP40-204ENST00000427947 PAK3O75914 559 aaPredicted RBP10.73□□□□□ -0.69
USP40-204ENST00000427947 RNF25Q96BH1 459 aaPredicted RBP10.73□□□□□ -0.69
USP40-204ENST00000427947 CHRM1P11229 460 aaPredicted RBP10.7□□□□□ -0.7
USP40-204ENST00000427947 CCDC61Q9Y6R9 512 aa10.69□□□□□ -0.7
USP40-204ENST00000427947 RIOK3O14730 519 aaKnown RBP10.68□□□□□ -0.7
USP40-204ENST00000427947 CD44P16070 742 aaKnown RBP10.67□□□□□ -0.7
USP40-204ENST00000427947 CHGAP10645 457 aaKnown RBP10.65□□□□□ -0.7
USP40-204ENST00000427947 ZRANB1Q9UGI0 708 aa10.65□□□□□ -0.7
USP40-204ENST00000427947 TAOK2Q9UL54 1235 aa10.63□□□□□ -0.71
USP40-204ENST00000427947 VGFO15240 615 aaPredicted RBP10.61□□□□□ -0.71
USP40-204ENST00000427947 SLC24A1O60721 1099 aa10.6□□□□□ -0.71
USP40-204ENST00000427947 C19orf67A6NJJ6 358 aa10.59□□□□□ -0.71
USP40-204ENST00000427947 ZNF467Q7Z7K2 595 aaPredicted RBP10.59□□□□□ -0.71
USP40-204ENST00000427947 BBXQ8WY36 941 aaPredicted RBP10.58□□□□□ -0.72
USP40-204ENST00000427947 HS6ST3Q8IZP7 471 aa10.57□□□□□ -0.72
USP40-204ENST00000427947 PHF12Q96QT6 1004 aa10.57□□□□□ -0.72
USP40-204ENST00000427947 PCDHB13Q9Y5F0 798 aa10.57□□□□□ -0.72
USP40-204ENST00000427947 STK25O00506 426 aa10.56□□□□□ -0.72
USP40-204ENST00000427947 MAP3K13O43283 966 aa10.56□□□□□ -0.72
USP40-204ENST00000427947 PLCB2Q00722 1185 aa10.56□□□□□ -0.72
USP40-204ENST00000427947 KIF12Q96FN5 646 aa10.56□□□□□ -0.72
USP40-204ENST00000427947 PCDHB8Q9UN66 801 aa10.56□□□□□ -0.72
USP40-204ENST00000427947 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.55□□□□□ -0.72
USP40-204ENST00000427947 ZFP91Q96JP5 570 aaPredicted RBP10.55□□□□□ -0.72
USP40-204ENST00000427947 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.55□□□□□ -0.72
USP40-204ENST00000427947 HAX1O00165 279 aa10.54□□□□□ -0.72
USP40-204ENST00000427947 ZNF579Q8NAF0 562 aaKnown RBP10.54□□□□□ -0.72
USP40-204ENST00000427947 IFNL1Q8IU54 200 aa10.52□□□□□ -0.73
USP40-204ENST00000427947 SGIP1Q9BQI5 828 aa10.52□□□□□ -0.73
USP40-204ENST00000427947 BCL11BQ9C0K0 894 aaPredicted RBP10.52□□□□□ -0.73
USP40-204ENST00000427947 STK24Q9Y6E0 443 aa10.51□□□□□ -0.73
USP40-204ENST00000427947 PDAP1Q13442 181 aaKnown RBP10.5□□□□□ -0.73
USP40-204ENST00000427947 PSEN1P49768 467 aa10.48□□□□□ -0.73
USP40-204ENST00000427947 PAXIP1Q6ZW49 1069 aaPredicted RBP10.48□□□□□ -0.73
USP40-204ENST00000427947 CFAP44Q96MT7 982 aa10.48□□□□□ -0.73
USP40-204ENST00000427947 POTEHQ6S545 545 aa10.46□□□□□ -0.73
USP40-204ENST00000427947 EVX2Q03828 476 aa10.45□□□□□ -0.74
USP40-204ENST00000427947 DNAJC5Q9H3Z4 198 aa10.45□□□□□ -0.74
USP40-204ENST00000427947 SPRYD3Q8NCJ5 442 aa10.44□□□□□ -0.74
USP40-204ENST00000427947 MS4A3Q96HJ5 214 aa10.44□□□□□ -0.74
USP40-204ENST00000427947 HAP1P54257 671 aaPredicted RBP10.43□□□□□ -0.74
USP40-204ENST00000427947 NKX1-1Q15270 411 aaPredicted RBP10.42□□□□□ -0.74
USP40-204ENST00000427947 TRPC6Q9Y210 931 aa10.38□□□□□ -0.75
USP40-204ENST00000427947 GALR2O43603 387 aaPredicted RBP10.37□□□□□ -0.75
USP40-204ENST00000427947 TMEM106CQ9BVX2 250 aa10.36□□□□□ -0.75
USP40-204ENST00000427947 CABP2Q9NPB3 220 aa10.36□□□□□ -0.75
USP40-204ENST00000427947 GTPBP6O43824 516 aaPredicted RBP10.34□□□□□ -0.75
USP40-204ENST00000427947 CLCN6P51797 869 aa10.33□□□□□ -0.76
USP40-204ENST00000427947 RYDENQ9NUL5 291 aaKnown RBP10.32□□□□□ -0.76
USP40-204ENST00000427947 TIE1P35590 1138 aa10.31□□□□□ -0.76
USP40-204ENST00000427947 EFCAB3Q8N7B9 438 aa10.31□□□□□ -0.76
USP40-204ENST00000427947 GOLGA2Q08379 1002 aa10.3□□□□□ -0.76
USP40-204ENST00000427947 TTLL13PA6NNM8 815 aa10.29□□□□□ -0.76
USP40-204ENST00000427947 MFRPQ9BY79 579 aa10.28□□□□□ -0.76
USP40-204ENST00000427947 BMP2KQ9NSY1 1161 aaPredicted RBP10.28□□□□□ -0.76
USP40-204ENST00000427947 TSHZ2Q9NRE2 1034 aa10.27□□□□□ -0.77
USP40-204ENST00000427947 GABBR2O75899 941 aa10.26□□□□□ -0.77
USP40-204ENST00000427947 SOX12O15370 315 aa10.25□□□□□ -0.77
USP40-204ENST00000427947 MKRN3Q13064 507 aaKnown RBP10.24□□□□□ -0.77
USP40-204ENST00000427947 PHF8Q9UPP1 1060 aa10.24□□□□□ -0.77
USP40-204ENST00000427947 NLRP6P59044 892 aa10.23□□□□□ -0.77
USP40-204ENST00000427947 TRIM35Q9UPQ4 493 aa10.23□□□□□ -0.77
USP40-204ENST00000427947 VSIG10Q8N0Z9 540 aa10.22□□□□□ -0.77
USP40-204ENST00000427947 FBXO22Q8NEZ5 403 aa10.21□□□□□ -0.77
USP40-204ENST00000427947 ATN1P54259 1190 aaPredicted RBP10.2□□□□□ -0.78
USP40-204ENST00000427947 ATMINO43313 823 aaPredicted RBP10.19□□□□□ -0.78
USP40-204ENST00000427947 ASTLQ6HA08 431 aaPredicted RBP10.17□□□□□ -0.78
USP40-204ENST00000427947 DCBLD2Q96PD2 775 aa10.17□□□□□ -0.78
USP40-204ENST00000427947 KDM2AQ9Y2K7 1162 aa10.17□□□□□ -0.78
USP40-204ENST00000427947 SP7Q8TDD2 431 aaPredicted RBP10.16□□□□□ -0.78
USP40-204ENST00000427947 PPP1R37O75864 691 aa10.15□□□□□ -0.78
USP40-204ENST00000427947 MS4A4AQ96JQ5 239 aa10.15□□□□□ -0.78
USP40-204ENST00000427947 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.15□□□□□ -0.783e-7■■■□□ 14.8
USP40-204ENST00000427947 IER5LQ5T953 404 aa10.09□□□□□ -0.79
USP40-204ENST00000427947 ILDR1Q86SU0 546 aaPredicted RBP10.09□□□□□ -0.79
USP40-204ENST00000427947 CADPS2Q86UW7 1296 aa10.08□□□□□ -0.8
USP40-204ENST00000427947 PELP1Q8IZL8 1130 aaKnown RBP10.08□□□□□ -0.8
USP40-204ENST00000427947 IRX5P78411 483 aaPredicted RBP10.07□□□□□ -0.8
USP40-204ENST00000427947 DPY19L2Q6NUT2 758 aa10.05□□□□□ -0.8
USP40-204ENST00000427947 PDCD7Q8N8D1 485 aaKnown RBP10.05□□□□□ -0.8
USP40-204ENST00000427947 OCEL1Q9H607 264 aa10.05□□□□□ -0.8
USP40-204ENST00000427947 POTEIP0CG38 1075 aa10.04□□□□□ -0.8
USP40-204ENST00000427947 PLCG2P16885 1265 aa10.04□□□□□ -0.8
USP40-204ENST00000427947 SEC24BO95487 1268 aa10.03□□□□□ -0.8
USP40-204ENST00000427947 SLC39A7Q92504 469 aa10.03□□□□□ -0.8
USP40-204ENST00000427947 C7P10643 843 aa9.99□□□□□ -0.81
USP40-204ENST00000427947 METRNQ9UJH8 293 aa9.99□□□□□ -0.81
USP40-204ENST00000427947 COLQQ9Y215 455 aaPredicted RBP9.99□□□□□ -0.81
USP40-204ENST00000427947 WDR70Q9NW82 654 aa9.98□□□□□ -0.81
USP40-204ENST00000427947 G3V3G9 751 aa9.97□□□□□ -0.81
USP40-204ENST00000427947 MICALL2Q8IY33 904 aa9.97□□□□□ -0.81
USP40-204ENST00000427947 BOLA1Q9Y3E2 137 aa9.96□□□□□ -0.82
USP40-204ENST00000427947 NCKAP5LQ9HCH0 1330 aa9.95□□□□□ -0.82
USP40-204ENST00000427947 POTEFA5A3E0 1075 aa9.94□□□□□ -0.82
USP40-204ENST00000427947 PDE4AP27815 886 aa9.93□□□□□ -0.82
USP40-204ENST00000427947 BCANQ96GW7 911 aa9.93□□□□□ -0.82
USP40-204ENST00000427947 L3MBTL3Q96JM7 780 aaPredicted RBP9.93□□□□□ -0.82
USP40-204ENST00000427947 LARP6Q9BRS8 491 aaKnown RBP9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms