RNA–Protein interactions for RNA: ENST00000427193.1

C9orf3-205, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 704 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-205ENST00000427193 CCDC61Q9Y6R9 512 aa16.54■□□□□ 0.24
C9orf3-205ENST00000427193 VASPP50552 380 aaPredicted RBP16.47■□□□□ 0.23
C9orf3-205ENST00000427193 NUBP1P53384 320 aa16.47■□□□□ 0.23
C9orf3-205ENST00000427193 MS4A3Q96HJ5 214 aa16.44■□□□□ 0.22
C9orf3-205ENST00000427193 KIF12Q96FN5 646 aa16.41■□□□□ 0.22
C9orf3-205ENST00000427193 FAM212AQ96EL1 285 aa16.39■□□□□ 0.21
C9orf3-205ENST00000427193 LHX8Q68G74 356 aa16.33■□□□□ 0.2
C9orf3-205ENST00000427193 MAP3K13O43283 966 aa16.32■□□□□ 0.2
C9orf3-205ENST00000427193 KLHL34Q8N239 644 aa16.32■□□□□ 0.2
C9orf3-205ENST00000427193 ASTLQ6HA08 431 aaPredicted RBP16.29■□□□□ 0.2
C9orf3-205ENST00000427193 SGIP1Q9BQI5 828 aa16.27■□□□□ 0.2
C9orf3-205ENST00000427193 DCAF8Q5TAQ9 597 aa16.25■□□□□ 0.19
C9orf3-205ENST00000427193 ATMINO43313 823 aaPredicted RBP16.24■□□□□ 0.19
C9orf3-205ENST00000427193 PCDHB13Q9Y5F0 798 aa16.22■□□□□ 0.19
C9orf3-205ENST00000427193 PELP1Q8IZL8 1130 aaKnown RBP16.21■□□□□ 0.19
C9orf3-205ENST00000427193 TIE1P35590 1138 aa16.18■□□□□ 0.18
C9orf3-205ENST00000427193 IFNLR1Q8IU57 520 aaPredicted RBP16.18■□□□□ 0.18
C9orf3-205ENST00000427193 TRPC6Q9Y210 931 aa16.17■□□□□ 0.18
C9orf3-205ENST00000427193 GSE1Q14687 1217 aa16.16■□□□□ 0.18
C9orf3-205ENST00000427193 BMP2KQ9NSY1 1161 aaPredicted RBP16.16■□□□□ 0.18
C9orf3-205ENST00000427193 SLC39A7Q92504 469 aa16.15■□□□□ 0.18
C9orf3-205ENST00000427193 ATN1P54259 1190 aaPredicted RBP16.14■□□□□ 0.17
C9orf3-205ENST00000427193 C7P10643 843 aa16.12■□□□□ 0.17
C9orf3-205ENST00000427193 IFNL1Q8IU54 200 aa16.12■□□□□ 0.17
C9orf3-205ENST00000427193 SPOCK2Q92563 424 aa16.12■□□□□ 0.17
C9orf3-205ENST00000427193 PYGBP11216 843 aa16.11■□□□□ 0.17
C9orf3-205ENST00000427193 METRNQ9UJH8 293 aa16.11■□□□□ 0.17
C9orf3-205ENST00000427193 TTLL13PA6NNM8 815 aa16.07■□□□□ 0.16
C9orf3-205ENST00000427193 POTEB2H3BUK9 544 aa16.01■□□□□ 0.15
C9orf3-205ENST00000427193 CHRM1P11229 460 aaPredicted RBP16■□□□□ 0.15
C9orf3-205ENST00000427193 TMEM106CQ9BVX2 250 aa15.97■□□□□ 0.15
C9orf3-205ENST00000427193 TRIM35Q9UPQ4 493 aa15.97■□□□□ 0.15
C9orf3-205ENST00000427193 ZNF467Q7Z7K2 595 aaPredicted RBP15.95■□□□□ 0.14
C9orf3-205ENST00000427193 CIZ1Q9ULV3 898 aaPredicted RBP15.95■□□□□ 0.14
C9orf3-205ENST00000427193 PCDHB8Q9UN66 801 aa15.95■□□□□ 0.14
C9orf3-205ENST00000427193 IER5LQ5T953 404 aa15.93■□□□□ 0.14
C9orf3-205ENST00000427193 OTUD5Q96G74 571 aa15.9■□□□□ 0.14
C9orf3-205ENST00000427193 POTEFA5A3E0 1075 aa15.88■□□□□ 0.13
C9orf3-205ENST00000427193 SEC24BO95487 1268 aa15.87■□□□□ 0.13
C9orf3-205ENST00000427193 MAMSTRQ6ZN01 415 aa15.84■□□□□ 0.13
C9orf3-205ENST00000427193 POTEJP0CG39 1038 aa15.83■□□□□ 0.12
C9orf3-205ENST00000427193 TRIM41Q8WV44 630 aa15.83■□□□□ 0.12
C9orf3-205ENST00000427193 COLQQ9Y215 455 aaPredicted RBP15.82■□□□□ 0.12
C9orf3-205ENST00000427193 PSEN1P49768 467 aa15.76■□□□□ 0.11
C9orf3-205ENST00000427193 SCUBE2Q9NQ36 999 aa15.76■□□□□ 0.11
C9orf3-205ENST00000427193 PLCG2P16885 1265 aa15.74■□□□□ 0.11
C9orf3-205ENST00000427193 IRX5P78411 483 aaPredicted RBP15.74■□□□□ 0.11
C9orf3-205ENST00000427193 PDAP1Q13442 181 aaKnown RBP15.74■□□□□ 0.11
C9orf3-205ENST00000427193 GOLGA2Q08379 1002 aa15.7■□□□□ 0.1
C9orf3-205ENST00000427193 OCEL1Q9H607 264 aa15.69■□□□□ 0.1
C9orf3-205ENST00000427193 MKRN3Q13064 507 aaKnown RBP15.66■□□□□ 0.1
C9orf3-205ENST00000427193 RIOK3O14730 519 aaKnown RBP15.56■□□□□ 0.08
C9orf3-205ENST00000427193 CABP2Q9NPB3 220 aa15.56■□□□□ 0.08
C9orf3-205ENST00000427193 PDCD7Q8N8D1 485 aaKnown RBP15.55■□□□□ 0.08
C9orf3-205ENST00000427193 RNF25Q96BH1 459 aaPredicted RBP15.54■□□□□ 0.08
C9orf3-205ENST00000427193 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.54■□□□□ 0.08
C9orf3-205ENST00000427193 ILDR1Q86SU0 546 aaPredicted RBP15.5■□□□□ 0.07
C9orf3-205ENST00000427193 VGFO15240 615 aaPredicted RBP15.49■□□□□ 0.07
C9orf3-205ENST00000427193 SLAIN1Q8ND83 568 aa15.47■□□□□ 0.07
C9orf3-205ENST00000427193 L3MBTL3Q96JM7 780 aaPredicted RBP15.47■□□□□ 0.07
C9orf3-205ENST00000427193 TAOK2Q9UL54 1235 aa15.44■□□□□ 0.06
C9orf3-205ENST00000427193 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.43■□□□□ 0.06
C9orf3-205ENST00000427193 ECM2O94769 699 aaPredicted RBP15.43■□□□□ 0.06
C9orf3-205ENST00000427193 ZFP91Q96JP5 570 aaPredicted RBP15.43■□□□□ 0.06
C9orf3-205ENST00000427193 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.43■□□□□ 0.06
C9orf3-205ENST00000427193 EFCAB3Q8N7B9 438 aa15.4■□□□□ 0.06
C9orf3-205ENST00000427193 PKD2Q13563 968 aa15.39■□□□□ 0.05
C9orf3-205ENST00000427193 C3orf67Q6ZVT6 689 aa15.38■□□□□ 0.05
C9orf3-205ENST00000427193 FAM163AQ96GL9 167 aaPredicted RBP15.37■□□□□ 0.05
C9orf3-205ENST00000427193 POTEMA6NI47 508 aa15.35■□□□□ 0.05
C9orf3-205ENST00000427193 DPY19L2Q6NUT2 758 aa15.34■□□□□ 0.05
C9orf3-205ENST00000427193 SOX12O15370 315 aa15.33■□□□□ 0.04
C9orf3-205ENST00000427193 LCE2DQ5TA82 110 aaPredicted RBP15.33■□□□□ 0.04
C9orf3-205ENST00000427193 G3V3G9 751 aa15.32■□□□□ 0.04
C9orf3-205ENST00000427193 POTEGQ6S5H5 508 aa15.32■□□□□ 0.04
C9orf3-205ENST00000427193 BOLA1Q9Y3E2 137 aa15.31■□□□□ 0.04
C9orf3-205ENST00000427193 BCL11BQ9C0K0 894 aaPredicted RBP15.29■□□□□ 0.04
C9orf3-205ENST00000427193 RGL2O15211 777 aa15.27■□□□□ 0.04
C9orf3-205ENST00000427193 SNPHO15079 494 aa15.25■□□□□ 0.03
C9orf3-205ENST00000427193 STK24Q9Y6E0 443 aa15.25■□□□□ 0.03
C9orf3-205ENST00000427193 STK25O00506 426 aa15.23■□□□□ 0.03
C9orf3-205ENST00000427193 TMEM121BQ9BXQ6 578 aaPredicted RBP15.22■□□□□ 0.03
C9orf3-205ENST00000427193 PHF8Q9UPP1 1060 aa15.21■□□□□ 0.03
C9orf3-205ENST00000427193 ST18O60284 1047 aa15.19■□□□□ 0.02
C9orf3-205ENST00000427193 MS4A4AQ96JQ5 239 aa15.19■□□□□ 0.02
C9orf3-205ENST00000427193 NLRP6P59044 892 aa15.17■□□□□ 0.02
C9orf3-205ENST00000427193 PCDH10Q9P2E7 1040 aa15.16■□□□□ 0.02
C9orf3-205ENST00000427193 MICALL2Q8IY33 904 aa15.14■□□□□ 0.01
C9orf3-205ENST00000427193 FBXO22Q8NEZ5 403 aa15.12■□□□□ 0.01
C9orf3-205ENST00000427193 MFRPQ9BY79 579 aa15.1■□□□□ 0.01
C9orf3-205ENST00000427193 HS6ST3Q8IZP7 471 aa15□□□□□ -0.01
C9orf3-205ENST00000427193 TMEM92Q6UXU6 159 aa14.99□□□□□ -0.01
C9orf3-205ENST00000427193 HOXB3P14651 431 aaPredicted RBP14.97□□□□□ -0.01
C9orf3-205ENST00000427193 PLSCR2Q9NRY7 297 aa14.97□□□□□ -0.01
C9orf3-205ENST00000427193 DOK7Q18PE1 504 aa14.95□□□□□ -0.02
C9orf3-205ENST00000427193 CDAN1Q8IWY9 1227 aa14.95□□□□□ -0.02
C9orf3-205ENST00000427193 MARVELD3Q96A59 401 aa14.95□□□□□ -0.02
C9orf3-205ENST00000427193 CHGAP10645 457 aaKnown RBP14.91□□□□□ -0.02
C9orf3-205ENST00000427193 EMP3P54852 163 aa14.91□□□□□ -0.02
C9orf3-205ENST00000427193 ZNF710Q8N1W2 664 aa14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms