RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 RASEFQ8IZ41 740 aa11.63□□□□□ -0.55
VPS54-204ENST00000416400 SLC24A1O60721 1099 aa11.62□□□□□ -0.55
VPS54-204ENST00000416400 TSPYL2Q9H2G4 693 aaPredicted RBP11.62□□□□□ -0.55
VPS54-204ENST00000416400 DCAF8L2P0C7V8 631 aa11.61□□□□□ -0.55
VPS54-204ENST00000416400 CD44P16070 742 aaKnown RBP11.53□□□□□ -0.56
VPS54-204ENST00000416400 PYGBP11216 843 aa11.49□□□□□ -0.57
VPS54-204ENST00000416400 ZRANB1Q9UGI0 708 aa11.49□□□□□ -0.57
VPS54-204ENST00000416400 TAOK2Q9UL54 1235 aa11.48□□□□□ -0.57
VPS54-204ENST00000416400 HAX1O00165 279 aa11.47□□□□□ -0.57
VPS54-204ENST00000416400 CHRM1P11229 460 aaPredicted RBP11.47□□□□□ -0.57
VPS54-204ENST00000416400 RGL2O15211 777 aa11.46□□□□□ -0.57
VPS54-204ENST00000416400 CCDC61Q9Y6R9 512 aa11.44□□□□□ -0.58
VPS54-204ENST00000416400 C19orf67A6NJJ6 358 aa11.43□□□□□ -0.58
VPS54-204ENST00000416400 RIOK3O14730 519 aaKnown RBP11.42□□□□□ -0.58
VPS54-204ENST00000416400 ZNF467Q7Z7K2 595 aaPredicted RBP11.39□□□□□ -0.59
VPS54-204ENST00000416400 PCDHB13Q9Y5F0 798 aa11.36□□□□□ -0.59
VPS54-204ENST00000416400 VGFO15240 615 aaPredicted RBP11.35□□□□□ -0.59
VPS54-204ENST00000416400 ZNF579Q8NAF0 562 aaKnown RBP11.35□□□□□ -0.59
VPS54-204ENST00000416400 RNF25Q96BH1 459 aaPredicted RBP11.34□□□□□ -0.59
VPS54-204ENST00000416400 PHF12Q96QT6 1004 aa11.34□□□□□ -0.59
VPS54-204ENST00000416400 SGIP1Q9BQI5 828 aa11.34□□□□□ -0.59
VPS54-204ENST00000416400 CHGAP10645 457 aaKnown RBP11.33□□□□□ -0.6
VPS54-204ENST00000416400 KIF12Q96FN5 646 aa11.33□□□□□ -0.6
VPS54-204ENST00000416400 MAP3K13O43283 966 aa11.32□□□□□ -0.6
VPS54-204ENST00000416400 PCDHB8Q9UN66 801 aa11.3□□□□□ -0.6
VPS54-204ENST00000416400 CLCN6P51797 869 aa11.28□□□□□ -0.6
VPS54-204ENST00000416400 PDAP1Q13442 181 aaKnown RBP11.28□□□□□ -0.6
VPS54-204ENST00000416400 STK25O00506 426 aa11.27□□□□□ -0.61
VPS54-204ENST00000416400 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.27□□□□□ -0.61
VPS54-204ENST00000416400 IFNL1Q8IU54 200 aa11.26□□□□□ -0.61
VPS54-204ENST00000416400 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.25□□□□□ -0.61
VPS54-204ENST00000416400 ZFP91Q96JP5 570 aaPredicted RBP11.25□□□□□ -0.61
VPS54-204ENST00000416400 HS6ST3Q8IZP7 471 aa11.24□□□□□ -0.61
VPS54-204ENST00000416400 BBXQ8WY36 941 aaPredicted RBP11.24□□□□□ -0.61
VPS54-204ENST00000416400 PLSCR2Q9NRY7 297 aa11.24□□□□□ -0.61
VPS54-204ENST00000416400 PSEN1P49768 467 aa11.23□□□□□ -0.61
VPS54-204ENST00000416400 STK24Q9Y6E0 443 aa11.23□□□□□ -0.61
VPS54-204ENST00000416400 EVX2Q03828 476 aa11.22□□□□□ -0.61
VPS54-204ENST00000416400 BCL11BQ9C0K0 894 aaPredicted RBP11.22□□□□□ -0.61
VPS54-204ENST00000416400 MS4A3Q96HJ5 214 aa11.21□□□□□ -0.61
VPS54-204ENST00000416400 GOLGA2Q08379 1002 aa11.15□□□□□ -0.62
VPS54-204ENST00000416400 GALR2O43603 387 aaPredicted RBP11.13□□□□□ -0.63
VPS54-204ENST00000416400 TMEM106CQ9BVX2 250 aa11.13□□□□□ -0.63
VPS54-204ENST00000416400 TIE1P35590 1138 aa11.11□□□□□ -0.63
VPS54-204ENST00000416400 PAXIP1Q6ZW49 1069 aaPredicted RBP11.11□□□□□ -0.63
VPS54-204ENST00000416400 SPRYD3Q8NCJ5 442 aa11.11□□□□□ -0.63
VPS54-204ENST00000416400 CFAP44Q96MT7 982 aa11.11□□□□□ -0.63
VPS54-204ENST00000416400 GABBR2O75899 941 aa11.1□□□□□ -0.63
VPS54-204ENST00000416400 PLCB2Q00722 1185 aa11.1□□□□□ -0.63
VPS54-204ENST00000416400 DNAJC5Q9H3Z4 198 aa11.1□□□□□ -0.63
VPS54-204ENST00000416400 CABP2Q9NPB3 220 aa11.1□□□□□ -0.63
VPS54-204ENST00000416400 RYDENQ9NUL5 291 aaKnown RBP11.1□□□□□ -0.63
VPS54-204ENST00000416400 TRPC6Q9Y210 931 aa11.07□□□□□ -0.64
VPS54-204ENST00000416400 DCBLD2Q96PD2 775 aa11.06□□□□□ -0.64
VPS54-204ENST00000416400 MKRN3Q13064 507 aaKnown RBP11.05□□□□□ -0.64
VPS54-204ENST00000416400 TTLL13PA6NNM8 815 aa11.04□□□□□ -0.64
VPS54-204ENST00000416400 BMP2KQ9NSY1 1161 aaPredicted RBP11.04□□□□□ -0.64
VPS54-204ENST00000416400 EFCAB3Q8N7B9 438 aa11.03□□□□□ -0.64
VPS54-204ENST00000416400 SOX12O15370 315 aa11.02□□□□□ -0.65
VPS54-204ENST00000416400 HAP1P54257 671 aaPredicted RBP11.01□□□□□ -0.65
VPS54-204ENST00000416400 NKX1-1Q15270 411 aaPredicted RBP11.01□□□□□ -0.65
VPS54-204ENST00000416400 NLRP6P59044 892 aa10.99□□□□□ -0.65
VPS54-204ENST00000416400 TRIM35Q9UPQ4 493 aa10.99□□□□□ -0.65
VPS54-204ENST00000416400 ATMINO43313 823 aaPredicted RBP10.96□□□□□ -0.65
VPS54-204ENST00000416400 GTPBP6O43824 516 aaPredicted RBP10.96□□□□□ -0.65
VPS54-204ENST00000416400 LHX8Q68G74 356 aa10.96□□□□□ -0.65
VPS54-204ENST00000416400 ATN1P54259 1190 aaPredicted RBP10.95□□□□□ -0.66
VPS54-204ENST00000416400 ASTLQ6HA08 431 aaPredicted RBP10.95□□□□□ -0.66
VPS54-204ENST00000416400 MFRPQ9BY79 579 aa10.93□□□□□ -0.66
VPS54-204ENST00000416400 PHF8Q9UPP1 1060 aa10.93□□□□□ -0.66
VPS54-204ENST00000416400 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.92□□□□□ -0.661e-9■■□□□ 13.7
VPS54-204ENST00000416400 IER5LQ5T953 404 aa10.9□□□□□ -0.66
VPS54-204ENST00000416400 SEC24BO95487 1268 aa10.87□□□□□ -0.67
VPS54-204ENST00000416400 SLC39A7Q92504 469 aa10.87□□□□□ -0.67
VPS54-204ENST00000416400 PLCG2P16885 1265 aa10.86□□□□□ -0.67
VPS54-204ENST00000416400 FBXO22Q8NEZ5 403 aa10.86□□□□□ -0.67
VPS54-204ENST00000416400 G3V3G9 751 aa10.84□□□□□ -0.67
VPS54-204ENST00000416400 OCEL1Q9H607 264 aa10.84□□□□□ -0.67
VPS54-204ENST00000416400 C7P10643 843 aa10.83□□□□□ -0.68
VPS54-204ENST00000416400 TSHZ2Q9NRE2 1034 aa10.83□□□□□ -0.68
VPS54-204ENST00000416400 PELP1Q8IZL8 1130 aaKnown RBP10.81□□□□□ -0.68
VPS54-204ENST00000416400 VSIG10Q8N0Z9 540 aa10.81□□□□□ -0.68
VPS54-204ENST00000416400 IRX5P78411 483 aaPredicted RBP10.8□□□□□ -0.68
VPS54-204ENST00000416400 MS4A4AQ96JQ5 239 aa10.79□□□□□ -0.68
VPS54-204ENST00000416400 PPP1R37O75864 691 aa10.78□□□□□ -0.68
VPS54-204ENST00000416400 POTEIP0CG38 1075 aa10.78□□□□□ -0.68
VPS54-204ENST00000416400 METRNQ9UJH8 293 aa10.78□□□□□ -0.68
VPS54-204ENST00000416400 ILDR1Q86SU0 546 aaPredicted RBP10.77□□□□□ -0.69
VPS54-204ENST00000416400 L3MBTL3Q96JM7 780 aaPredicted RBP10.76□□□□□ -0.69
VPS54-204ENST00000416400 PDCD7Q8N8D1 485 aaKnown RBP10.74□□□□□ -0.69
VPS54-204ENST00000416400 DPY19L2Q6NUT2 758 aa10.73□□□□□ -0.69
VPS54-204ENST00000416400 WDR70Q9NW82 654 aa10.71□□□□□ -0.69
VPS54-204ENST00000416400 COLQQ9Y215 455 aaPredicted RBP10.71□□□□□ -0.69
VPS54-204ENST00000416400 BOLA1Q9Y3E2 137 aa10.71□□□□□ -0.69
VPS54-204ENST00000416400 MICALL2Q8IY33 904 aa10.68□□□□□ -0.7
VPS54-204ENST00000416400 PDE4AP27815 886 aa10.66□□□□□ -0.7
VPS54-204ENST00000416400 KDM2AQ9Y2K7 1162 aa10.65□□□□□ -0.7
VPS54-204ENST00000416400 C3orf67Q6ZVT6 689 aa10.64□□□□□ -0.71
VPS54-204ENST00000416400 CADPS2Q86UW7 1296 aa10.64□□□□□ -0.71
VPS54-204ENST00000416400 POTEFA5A3E0 1075 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms