RNA–Protein interactions for RNA: ENST00000414174.1

SF3B1-203, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 4

Gene SF3B1, Length 593 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-203ENST00000414174 POTEJP0CG39 1038 aa8.51□□□□□ -1.05
SF3B1-203ENST00000414174 MNX1P50219 401 aaPredicted RBP8.51□□□□□ -1.05
SF3B1-203ENST00000414174 EHMT2Q96KQ7 1210 aa8.51□□□□□ -1.05
SF3B1-203ENST00000414174 METRNQ9UJH8 293 aa8.51□□□□□ -1.05
SF3B1-203ENST00000414174 ATMINO43313 823 aaPredicted RBP8.5□□□□□ -1.05
SF3B1-203ENST00000414174 MS4A3Q96HJ5 214 aa8.45□□□□□ -1.06
SF3B1-203ENST00000414174 SPDYE4A6NLX3 237 aa8.44□□□□□ -1.06
SF3B1-203ENST00000414174 LCE2DQ5TA82 110 aaPredicted RBP8.44□□□□□ -1.06
SF3B1-203ENST00000414174 FAM163AQ96GL9 167 aaPredicted RBP8.43□□□□□ -1.06
SF3B1-203ENST00000414174 SCUBE2Q9NQ36 999 aa8.42□□□□□ -1.06
SF3B1-203ENST00000414174 ATN1P54259 1190 aaPredicted RBP8.37□□□□□ -1.07
SF3B1-203ENST00000414174 CCDC61Q9Y6R9 512 aa8.34□□□□□ -1.07
SF3B1-203ENST00000414174 POTEFA5A3E0 1075 aa8.33□□□□□ -1.08
SF3B1-203ENST00000414174 KIF12Q96FN5 646 aa8.33□□□□□ -1.08
SF3B1-203ENST00000414174 TSPYL2Q9H2G4 693 aaPredicted RBP8.32□□□□□ -1.08
SF3B1-203ENST00000414174 BMP2KQ9NSY1 1161 aaPredicted RBP8.3□□□□□ -1.08
SF3B1-203ENST00000414174 TIE1P35590 1138 aa8.29□□□□□ -1.08
SF3B1-203ENST00000414174 CDAN1Q8IWY9 1227 aa8.28□□□□□ -1.08
SF3B1-203ENST00000414174 MAP3K13O43283 966 aa8.23□□□□□ -1.09
SF3B1-203ENST00000414174 SEC24BO95487 1268 aa8.23□□□□□ -1.09
SF3B1-203ENST00000414174 TRPC6Q9Y210 931 aa8.23□□□□□ -1.09
SF3B1-203ENST00000414174 COLQQ9Y215 455 aaPredicted RBP8.23□□□□□ -1.09
SF3B1-203ENST00000414174 IER5LQ5T953 404 aa8.22□□□□□ -1.09
SF3B1-203ENST00000414174 PROM2Q8N271 834 aa8.22□□□□□ -1.09
SF3B1-203ENST00000414174 TTLL13PA6NNM8 815 aa8.21□□□□□ -1.1
SF3B1-203ENST00000414174 SGIP1Q9BQI5 828 aa8.2□□□□□ -1.1
SF3B1-203ENST00000414174 ST18O60284 1047 aa8.16□□□□□ -1.1
SF3B1-203ENST00000414174 PLEKHG5O94827 1062 aa8.16□□□□□ -1.1
SF3B1-203ENST00000414174 RASEFQ8IZ41 740 aa8.14□□□□□ -1.11
SF3B1-203ENST00000414174 SLAIN1Q8ND83 568 aa8.14□□□□□ -1.11
SF3B1-203ENST00000414174 TRIM35Q9UPQ4 493 aa8.14□□□□□ -1.11
SF3B1-203ENST00000414174 MMRN1Q13201 1228 aa8.11□□□□□ -1.11
SF3B1-203ENST00000414174 SPNS2Q8IVW8 549 aa8.11□□□□□ -1.11
SF3B1-203ENST00000414174 MIER1Q8N108 512 aa8.11□□□□□ -1.11
SF3B1-203ENST00000414174 TMEM121BQ9BXQ6 578 aaPredicted RBP8.1□□□□□ -1.11
SF3B1-203ENST00000414174 PCDHB13Q9Y5F0 798 aa8.09□□□□□ -1.11
SF3B1-203ENST00000414174 SNPHO15079 494 aa8.06□□□□□ -1.12
SF3B1-203ENST00000414174 PLCG2P16885 1265 aa8.05□□□□□ -1.12
SF3B1-203ENST00000414174 IRX5P78411 483 aaPredicted RBP8.04□□□□□ -1.12
SF3B1-203ENST00000414174 IFNL1Q8IU54 200 aa8.03□□□□□ -1.12
SF3B1-203ENST00000414174 TMEM106CQ9BVX2 250 aa8.02□□□□□ -1.13
SF3B1-203ENST00000414174 OCEL1Q9H607 264 aa8.01□□□□□ -1.13
SF3B1-203ENST00000414174 ZBTB47Q9UFB7 747 aaPredicted RBP8.01□□□□□ -1.13
SF3B1-203ENST00000414174 NUBP1P53384 320 aa8□□□□□ -1.13
SF3B1-203ENST00000414174 EIF2AK3Q9NZJ5 1116 aaKnown RBP7.97□□□□□ -1.13
SF3B1-203ENST00000414174 PLCD3Q8N3E9 789 aa7.96□□□□□ -1.14
SF3B1-203ENST00000414174 MARVELD3Q96A59 401 aa7.94□□□□□ -1.14
SF3B1-203ENST00000414174 FAM212AQ96EL1 285 aa7.94□□□□□ -1.14
SF3B1-203ENST00000414174 EMP3P54852 163 aa7.87□□□□□ -1.15
SF3B1-203ENST00000414174 L3MBTL3Q96JM7 780 aaPredicted RBP7.86□□□□□ -1.15
SF3B1-203ENST00000414174 KRTAP3-3Q9BYR6 98 aa7.86□□□□□ -1.15
SF3B1-203ENST00000414174 KRTAP3-2Q9BYR7 98 aa7.86□□□□□ -1.15
SF3B1-203ENST00000414174 POTEB3A0JP26 581 aa7.84□□□□□ -1.15
SF3B1-203ENST00000414174 POTEBQ6S5H4 581 aa7.84□□□□□ -1.15
SF3B1-203ENST00000414174 HS3ST6Q96QI5 342 aa7.84□□□□□ -1.15
SF3B1-203ENST00000414174 PDCD7Q8N8D1 485 aaKnown RBP7.83□□□□□ -1.16
SF3B1-203ENST00000414174 DCAF8Q5TAQ9 597 aa7.82□□□□□ -1.16
SF3B1-203ENST00000414174 C3orf67Q6ZVT6 689 aa7.82□□□□□ -1.16
SF3B1-203ENST00000414174 FAM205CA6NFA0 338 aa7.81□□□□□ -1.16
SF3B1-203ENST00000414174 PCDHB8Q9UN66 801 aa7.81□□□□□ -1.16
SF3B1-203ENST00000414174 PYGBP11216 843 aa7.8□□□□□ -1.16
SF3B1-203ENST00000414174 MKRN3Q13064 507 aaKnown RBP7.78□□□□□ -1.16
SF3B1-203ENST00000414174 GOLGA2Q08379 1002 aa7.75□□□□□ -1.17
SF3B1-203ENST00000414174 ZNF467Q7Z7K2 595 aaPredicted RBP7.75□□□□□ -1.17
SF3B1-203ENST00000414174 ILDR1Q86SU0 546 aaPredicted RBP7.75□□□□□ -1.17
SF3B1-203ENST00000414174 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.74□□□□□ -1.179e-27■■□□□ 14.2
SF3B1-203ENST00000414174 CHRM1P11229 460 aaPredicted RBP7.73□□□□□ -1.17
SF3B1-203ENST00000414174 FKBP8Q14318 412 aa7.71□□□□□ -1.18
SF3B1-203ENST00000414174 HOXB3P14651 431 aaPredicted RBP7.7□□□□□ -1.18
SF3B1-203ENST00000414174 HOXB1P14653 301 aaPredicted RBP7.7□□□□□ -1.18
SF3B1-203ENST00000414174 GSE1Q14687 1217 aa7.69□□□□□ -1.18
SF3B1-203ENST00000414174 PSEN1P49768 467 aa7.67□□□□□ -1.18
SF3B1-203ENST00000414174 RNF166Q96A37 237 aaPredicted RBP7.67□□□□□ -1.18
SF3B1-203ENST00000414174 ERBB3P21860 1342 aa7.66□□□□□ -1.18
SF3B1-203ENST00000414174 DOK7Q18PE1 504 aa7.65□□□□□ -1.18
SF3B1-203ENST00000414174 ZNF710Q8N1W2 664 aa7.65□□□□□ -1.18
SF3B1-203ENST00000414174 BOLA1Q9Y3E2 137 aa7.65□□□□□ -1.18
SF3B1-203ENST00000414174 DPY19L2Q6NUT2 758 aa7.64□□□□□ -1.19
SF3B1-203ENST00000414174 G3V3G9 751 aa7.63□□□□□ -1.19
SF3B1-203ENST00000414174 FBXO3Q9UK99 471 aa7.62□□□□□ -1.19
SF3B1-203ENST00000414174 MYT1LQ9UL68 1186 aa7.62□□□□□ -1.19
SF3B1-203ENST00000414174 PDAP1Q13442 181 aaKnown RBP7.61□□□□□ -1.19
SF3B1-203ENST00000414174 PTGER2P43116 358 aa7.6□□□□□ -1.19
SF3B1-203ENST00000414174 ZNF687Q8N1G0 1237 aa7.6□□□□□ -1.19
SF3B1-203ENST00000414174 RIMBP2O15034 1052 aa7.59□□□□□ -1.19
SF3B1-203ENST00000414174 ZSWIM6Q9HCJ5 1215 aa7.59□□□□□ -1.19
SF3B1-203ENST00000414174 VARS2Q5ST30 1063 aaKnown RBP7.57□□□□□ -1.2
SF3B1-203ENST00000414174 KLHL34Q8N239 644 aa7.55□□□□□ -1.2
SF3B1-203ENST00000414174 CABP2Q9NPB3 220 aa7.55□□□□□ -1.2
SF3B1-203ENST00000414174 GPR153Q6NV75 609 aa7.52□□□□□ -1.21
SF3B1-203ENST00000414174 VASPP50552 380 aaPredicted RBP7.48□□□□□ -1.21
SF3B1-203ENST00000414174 ANKRD13DQ6ZTN6 518 aa7.46□□□□□ -1.22
SF3B1-203ENST00000414174 TMEM92Q6UXU6 159 aa7.45□□□□□ -1.22
SF3B1-203ENST00000414174 MICALL2Q8IY33 904 aa7.44□□□□□ -1.22
SF3B1-203ENST00000414174 EFCAB3Q8N7B9 438 aa7.42□□□□□ -1.22
SF3B1-203ENST00000414174 ZNF316A6NFI3 1004 aaPredicted RBP7.41□□□□□ -1.22
SF3B1-203ENST00000414174 SLC24A1O60721 1099 aa7.41□□□□□ -1.22
SF3B1-203ENST00000414174 LSM11P83369 360 aaKnown RBP eCLIP7.41□□□□□ -1.22
SF3B1-203ENST00000414174 ARSIQ5FYB1 569 aa7.41□□□□□ -1.22
SF3B1-203ENST00000414174 SPOCK2Q92563 424 aa7.4□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms