RNA–Protein interactions for RNA: ENST00000413872.6

PHRF1-202, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-202ENST00000413872 EIF4G2P78344 907 aaKnown RBP eCLIP23.26■■□□□ 1.313e-7■■■□□ 15.9
PHRF1-202ENST00000413872 SMARCA2P51531 1590 aa23.25■■□□□ 1.31
PHRF1-202ENST00000413872 FAM9BQ8IZU0 186 aa23.24■■□□□ 1.31
PHRF1-202ENST00000413872 FHAD1B1AJZ9 1412 aa23.24■■□□□ 1.31
PHRF1-202ENST00000413872 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.22■■□□□ 1.31
PHRF1-202ENST00000413872 PDS5BQ9NTI5 1447 aa23.2■■□□□ 1.31
PHRF1-202ENST00000413872 CARMIL1Q5VZK9 1371 aa23.2■■□□□ 1.3
PHRF1-202ENST00000413872 CUX2O14529 1486 aa23.19■■□□□ 1.3
PHRF1-202ENST00000413872 ARID4BQ4LE39 1312 aaPredicted RBP23.19■■□□□ 1.3
PHRF1-202ENST00000413872 ANP32AP39687 249 aaKnown RBP23.18■■□□□ 1.3
PHRF1-202ENST00000413872 CDCA8Q53HL2 280 aa23.17■■□□□ 1.3
PHRF1-202ENST00000413872 MRS2Q9HD23 443 aa23.14■■□□□ 1.3
PHRF1-202ENST00000413872 MYO15BQ96JP2 1530 aa23.13■■□□□ 1.29
PHRF1-202ENST00000413872 CCNB3Q8WWL7 1395 aa23.11■■□□□ 1.29
PHRF1-202ENST00000413872 UPF2Q9HAU5 1272 aaKnown RBP23.1■■□□□ 1.29
PHRF1-202ENST00000413872 C14orf37Q86TY3 774 aa23.09■■□□□ 1.29
PHRF1-202ENST00000413872 SCAF1Q9H7N4 1312 aaKnown RBP23.08■■□□□ 1.29
PHRF1-202ENST00000413872 RGL3Q3MIN7 710 aa23.07■■□□□ 1.28
PHRF1-202ENST00000413872 SALL2Q9Y467 1007 aaPredicted RBP23.05■■□□□ 1.28
PHRF1-202ENST00000413872 EIF4G1Q04637 1599 aaKnown RBP23.05■■□□□ 1.28
PHRF1-202ENST00000413872 MROH2BQ7Z745 1585 aa23.04■■□□□ 1.28
PHRF1-202ENST00000413872 CARMIL2Q6F5E8 1435 aa23.03■■□□□ 1.28
PHRF1-202ENST00000413872 FKBP8Q14318 412 aa23.03■■□□□ 1.28
PHRF1-202ENST00000413872 CCDC88BA6NC98 1476 aa23.03■■□□□ 1.28
PHRF1-202ENST00000413872 NPM2Q86SE8 214 aaKnown RBP23.02■■□□□ 1.28
PHRF1-202ENST00000413872 CFAP53Q96M91 514 aa23■■□□□ 1.27
PHRF1-202ENST00000413872 KANK1Q14678 1352 aa22.97■■□□□ 1.27
PHRF1-202ENST00000413872 HSP90AA1P07900 732 aaKnown RBP22.96■■□□□ 1.27
PHRF1-202ENST00000413872 SOGA1O94964 1423 aa22.96■■□□□ 1.27
PHRF1-202ENST00000413872 CARD11Q9BXL7 1154 aa22.95■■□□□ 1.26
PHRF1-202ENST00000413872 KNSTRNQ9Y448 316 aa22.94■■□□□ 1.26
PHRF1-202ENST00000413872 CCDC136Q96JN2 1154 aa22.93■■□□□ 1.26
PHRF1-202ENST00000413872 MYH16Q9H6N6 1097 aa22.92■■□□□ 1.26
PHRF1-202ENST00000413872 HDGFP51858 240 aaKnown RBP22.91■■□□□ 1.26
PHRF1-202ENST00000413872 ZBTB7CA1YPR0 619 aa22.88■■□□□ 1.25
PHRF1-202ENST00000413872 HAP1P54257 671 aaPredicted RBP22.88■■□□□ 1.25
PHRF1-202ENST00000413872 HIRIP3Q9BW71 556 aaPredicted RBP22.88■■□□□ 1.25
PHRF1-202ENST00000413872 CADPSQ9ULU8 1353 aa22.88■■□□□ 1.25
PHRF1-202ENST00000413872 POGKQ9P215 609 aa22.87■■□□□ 1.25
PHRF1-202ENST00000413872 TOP2AP11388 1531 aaKnown RBP22.87■■□□□ 1.25
PHRF1-202ENST00000413872 SENP3Q9H4L4 574 aaPredicted RBP22.85■■□□□ 1.25
PHRF1-202ENST00000413872 FMN1Q68DA7 1419 aa22.84■■□□□ 1.25
PHRF1-202ENST00000413872 A0A0G2JS52 829 aa22.83■■□□□ 1.25
PHRF1-202ENST00000413872 TRHP20396 242 aaPredicted RBP22.83■■□□□ 1.24
PHRF1-202ENST00000413872 TIMELESSQ9UNS1 1208 aa22.82■■□□□ 1.24
PHRF1-202ENST00000413872 TDRD9Q8NDG6 1382 aaKnown RBP22.82■■□□□ 1.24
PHRF1-202ENST00000413872 VPS8Q8N3P4 1428 aa22.81■■□□□ 1.24
PHRF1-202ENST00000413872 ARHGAP35Q9NRY4 1499 aa22.8■■□□□ 1.24
PHRF1-202ENST00000413872 NUDCQ9Y266 331 aa22.79■■□□□ 1.24
PHRF1-202ENST00000413872 ANP32BQ92688 251 aaKnown RBP22.78■■□□□ 1.24
PHRF1-202ENST00000413872 MIER1Q8N108 512 aa22.76■■□□□ 1.23
PHRF1-202ENST00000413872 EFCAB2Q5VUJ9 269 aa22.75■■□□□ 1.23
PHRF1-202ENST00000413872 PLEKHG5O94827 1062 aa22.74■■□□□ 1.23
PHRF1-202ENST00000413872 ABCC8Q09428 1581 aa22.73■■□□□ 1.23
PHRF1-202ENST00000413872 ATAD2BQ9ULI0 1458 aa22.72■■□□□ 1.23
PHRF1-202ENST00000413872 MAPK8IP3Q9UPT6 1336 aa22.71■■□□□ 1.23
PHRF1-202ENST00000413872 PPM1GO15355 546 aaPredicted RBP22.7■■□□□ 1.22
PHRF1-202ENST00000413872 TMF1P82094 1093 aa22.7■■□□□ 1.22
PHRF1-202ENST00000413872 SIN3AQ96ST3 1273 aa22.68■■□□□ 1.22
PHRF1-202ENST00000413872 DCAF11Q8TEB1 546 aa22.67■■□□□ 1.22
PHRF1-202ENST00000413872 SETD5Q9C0A6 1442 aa22.67■■□□□ 1.22
PHRF1-202ENST00000413872 PNNQ9H307 717 aaKnown RBP22.66■■□□□ 1.22
PHRF1-202ENST00000413872 RAPGEF2Q9Y4G8 1499 aa22.66■■□□□ 1.22
PHRF1-202ENST00000413872 MLECQ14165 292 aa22.65■■□□□ 1.22
PHRF1-202ENST00000413872 WIZO95785 1651 aa22.65■■□□□ 1.22
PHRF1-202ENST00000413872 GGT6Q6P531 493 aa22.63■■□□□ 1.21
PHRF1-202ENST00000413872 LMOD2Q6P5Q4 547 aa22.63■■□□□ 1.21
PHRF1-202ENST00000413872 RSPH4AQ5TD94 716 aa22.62■■□□□ 1.21
PHRF1-202ENST00000413872 ANKRD30AQ9BXX3 1397 aa22.62■■□□□ 1.21
PHRF1-202ENST00000413872 EIF5BO60841 1220 aaKnown RBP22.6■■□□□ 1.21
PHRF1-202ENST00000413872 SMARCA4P51532 1647 aa22.6■■□□□ 1.21
PHRF1-202ENST00000413872 CHMP4BQ9H444 224 aaKnown RBP22.57■■□□□ 1.2
PHRF1-202ENST00000413872 PKD2Q13563 968 aa22.57■■□□□ 1.2
PHRF1-202ENST00000413872 FTSJ3Q8IY81 847 aaKnown RBP22.54■■□□□ 1.2
PHRF1-202ENST00000413872 JPH4Q96JJ6 628 aa22.54■■□□□ 1.2
PHRF1-202ENST00000413872 SRPK2P78362 688 aaKnown RBP22.53■■□□□ 1.2
PHRF1-202ENST00000413872 CCDC18Q5T9S5 1454 aa22.53■■□□□ 1.2
PHRF1-202ENST00000413872 FANCD2Q9BXW9 1451 aa22.52■■□□□ 1.2
PHRF1-202ENST00000413872 MS4A1P11836 297 aa22.52■■□□□ 1.2
PHRF1-202ENST00000413872 KANK4Q5T7N3 995 aaPredicted RBP22.51■■□□□ 1.19
PHRF1-202ENST00000413872 NUP155O75694 1391 aa22.5■■□□□ 1.19
PHRF1-202ENST00000413872 NEUROD2Q15784 382 aa22.48■■□□□ 1.19
PHRF1-202ENST00000413872 ARXQ96QS3 562 aa22.48■■□□□ 1.19
PHRF1-202ENST00000413872 U2SURPO15042 1029 aaKnown RBP22.47■■□□□ 1.19
PHRF1-202ENST00000413872 IRX6P78412 446 aaPredicted RBP22.47■■□□□ 1.19
PHRF1-202ENST00000413872 CC2D1BQ5T0F9 858 aaKnown RBP22.47■■□□□ 1.19
PHRF1-202ENST00000413872 BECN1Q14457 450 aa22.46■■□□□ 1.19
PHRF1-202ENST00000413872 LAS1LQ9Y4W2 734 aaKnown RBP22.46■■□□□ 1.19
PHRF1-202ENST00000413872 CASC1Q6TDU7 716 aa22.45■■□□□ 1.18
PHRF1-202ENST00000413872 SPAG9O60271 1321 aaKnown RBP22.45■■□□□ 1.18
PHRF1-202ENST00000413872 TNNT2P45379 298 aaPredicted RBP22.45■■□□□ 1.18
PHRF1-202ENST00000413872 HDGFL2Q7Z4V5 671 aaPredicted RBP22.45■■□□□ 1.18
PHRF1-202ENST00000413872 MPHOSPH9Q99550 1183 aa22.44■■□□□ 1.18
PHRF1-202ENST00000413872 FHOD3Q2V2M9 1422 aa22.43■■□□□ 1.18
PHRF1-202ENST00000413872 DDRGK1Q96HY6 314 aa22.43■■□□□ 1.18
PHRF1-202ENST00000413872 MORC1Q86VD1 984 aa22.43■■□□□ 1.18
PHRF1-202ENST00000413872 KIF3BO15066 747 aa22.42■■□□□ 1.18
PHRF1-202ENST00000413872 EIF3AQ14152 1382 aaKnown RBP22.38■■□□□ 1.17
PHRF1-202ENST00000413872 RAB3GAP2Q9H2M9 1393 aa22.37■■□□□ 1.17
PHRF1-202ENST00000413872 STK26Q9P289 416 aa22.35■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 128.4 ms