RNA–Protein interactions for RNA: ENST00000413333.1

HMGB3P31-201, Transcript of high mobility group box 3 pseudogene 31, humanhuman

BASIC

Gene HMGB3P31, Length 595 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P31-201ENST00000413333 TSHZ2Q9NRE2 1034 aa10.74□□□□□ -0.69
HMGB3P31-201ENST00000413333 HS6ST3Q8IZP7 471 aa10.7□□□□□ -0.7
HMGB3P31-201ENST00000413333 RNF25Q96BH1 459 aaPredicted RBP10.7□□□□□ -0.7
HMGB3P31-201ENST00000413333 CREBZFQ9NS37 354 aa10.7□□□□□ -0.7
HMGB3P31-201ENST00000413333 REM2Q8IYK8 340 aaPredicted RBP10.69□□□□□ -0.7
HMGB3P31-201ENST00000413333 FAM212AQ96EL1 285 aa10.68□□□□□ -0.7
HMGB3P31-201ENST00000413333 PRKCSHP14314 528 aaPredicted RBP10.66□□□□□ -0.7
HMGB3P31-201ENST00000413333 RIOK3O14730 519 aaKnown RBP10.65□□□□□ -0.7
HMGB3P31-201ENST00000413333 TAOK2Q9UL54 1235 aa10.65□□□□□ -0.7
HMGB3P31-201ENST00000413333 MNX1P50219 401 aaPredicted RBP10.63□□□□□ -0.71
HMGB3P31-201ENST00000413333 RASEFQ8IZ41 740 aa10.61□□□□□ -0.71
HMGB3P31-201ENST00000413333 STK25O00506 426 aa10.59□□□□□ -0.71
HMGB3P31-201ENST00000413333 VGFO15240 615 aaPredicted RBP10.57□□□□□ -0.72
HMGB3P31-201ENST00000413333 NKX1-1Q15270 411 aaPredicted RBP10.57□□□□□ -0.72
HMGB3P31-201ENST00000413333 DNAJC5Q9H3Z4 198 aa10.57□□□□□ -0.72
HMGB3P31-201ENST00000413333 PITPNM1O00562 1244 aa10.56□□□□□ -0.72
HMGB3P31-201ENST00000413333 POTEHQ6S545 545 aa10.56□□□□□ -0.72
HMGB3P31-201ENST00000413333 PYGBP11216 843 aa10.55□□□□□ -0.72
HMGB3P31-201ENST00000413333 TPRNQ4KMQ1 711 aa10.54□□□□□ -0.72
HMGB3P31-201ENST00000413333 CHRM1P11229 460 aaPredicted RBP10.53□□□□□ -0.72
HMGB3P31-201ENST00000413333 GTPBP6O43824 516 aaPredicted RBP10.52□□□□□ -0.73
HMGB3P31-201ENST00000413333 STK24Q9Y6E0 443 aa10.52□□□□□ -0.73
HMGB3P31-201ENST00000413333 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.51□□□□□ -0.73
HMGB3P31-201ENST00000413333 ZFP91Q96JP5 570 aaPredicted RBP10.51□□□□□ -0.73
HMGB3P31-201ENST00000413333 BCL11BQ9C0K0 894 aaPredicted RBP10.5□□□□□ -0.73
HMGB3P31-201ENST00000413333 NBR1Q14596 966 aa10.48□□□□□ -0.73
HMGB3P31-201ENST00000413333 CHADLQ6NUI6 762 aa10.48□□□□□ -0.73
HMGB3P31-201ENST00000413333 SGIP1Q9BQI5 828 aa10.46□□□□□ -0.73
HMGB3P31-201ENST00000413333 TSPYL2Q9H2G4 693 aaPredicted RBP10.46□□□□□ -0.73
HMGB3P31-201ENST00000413333 RYDENQ9NUL5 291 aaKnown RBP10.4□□□□□ -0.74
HMGB3P31-201ENST00000413333 FARP1Q9Y4F1 1045 aaPredicted RBP10.38□□□□□ -0.75
HMGB3P31-201ENST00000413333 ZNF467Q7Z7K2 595 aaPredicted RBP10.36□□□□□ -0.75
HMGB3P31-201ENST00000413333 PCDHB8Q9UN66 801 aa10.34□□□□□ -0.75
HMGB3P31-201ENST00000413333 PCDHB13Q9Y5F0 798 aa10.34□□□□□ -0.75
HMGB3P31-201ENST00000413333 PRKAR2AP13861 404 aaKnown RBP10.33□□□□□ -0.76
HMGB3P31-201ENST00000413333 PDAP1Q13442 181 aaKnown RBP10.31□□□□□ -0.76
HMGB3P31-201ENST00000413333 CCDC61Q9Y6R9 512 aa10.27□□□□□ -0.77
HMGB3P31-201ENST00000413333 PSEN1P49768 467 aa10.26□□□□□ -0.77
HMGB3P31-201ENST00000413333 PAK3O75914 559 aaPredicted RBP10.25□□□□□ -0.77
HMGB3P31-201ENST00000413333 ZNF579Q8NAF0 562 aaKnown RBP10.24□□□□□ -0.77
HMGB3P31-201ENST00000413333 WDR70Q9NW82 654 aa10.23□□□□□ -0.77
HMGB3P31-201ENST00000413333 FXR2P51116 673 aaKnown RBP eCLIP10.22□□□□□ -0.77
HMGB3P31-201ENST00000413333 CADPS2Q86UW7 1296 aa10.22□□□□□ -0.77
HMGB3P31-201ENST00000413333 P3H3Q8IVL6 736 aa10.2□□□□□ -0.78
HMGB3P31-201ENST00000413333 MFRPQ9BY79 579 aa10.2□□□□□ -0.78
HMGB3P31-201ENST00000413333 IFNL1Q8IU54 200 aa10.19□□□□□ -0.78
HMGB3P31-201ENST00000413333 MAP3K13O43283 966 aa10.17□□□□□ -0.78
HMGB3P31-201ENST00000413333 EFCAB3Q8N7B9 438 aa10.16□□□□□ -0.78
HMGB3P31-201ENST00000413333 CABP2Q9NPB3 220 aa10.16□□□□□ -0.78
HMGB3P31-201ENST00000413333 KIF12Q96FN5 646 aa10.15□□□□□ -0.78
HMGB3P31-201ENST00000413333 CHRDL2Q6WN34 429 aa10.14□□□□□ -0.79
HMGB3P31-201ENST00000413333 PIP4P2Q8N4L2 257 aa10.14□□□□□ -0.79
HMGB3P31-201ENST00000413333 KCNV2Q8TDN2 545 aa10.13□□□□□ -0.79
HMGB3P31-201ENST00000413333 PPP1R37O75864 691 aa10.12□□□□□ -0.79
HMGB3P31-201ENST00000413333 NLRP6P59044 892 aa10.12□□□□□ -0.79
HMGB3P31-201ENST00000413333 ZRANB1Q9UGI0 708 aa10.11□□□□□ -0.79
HMGB3P31-201ENST00000413333 PHF8Q9UPP1 1060 aa10.11□□□□□ -0.79
HMGB3P31-201ENST00000413333 SOX12O15370 315 aa10.09□□□□□ -0.79
HMGB3P31-201ENST00000413333 FBXO22Q8NEZ5 403 aa10.08□□□□□ -0.8
HMGB3P31-201ENST00000413333 CD44P16070 742 aaKnown RBP10.06□□□□□ -0.8
HMGB3P31-201ENST00000413333 PHF12Q96QT6 1004 aa10.05□□□□□ -0.8
HMGB3P31-201ENST00000413333 LMOD2Q6P5Q4 547 aa10.03□□□□□ -0.8
HMGB3P31-201ENST00000413333 GOLGA2Q08379 1002 aa10.02□□□□□ -0.81
HMGB3P31-201ENST00000413333 E2F4Q16254 413 aa10.01□□□□□ -0.81
HMGB3P31-201ENST00000413333 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.01□□□□□ -0.81
HMGB3P31-201ENST00000413333 TULP1O00294 542 aaPredicted RBP10□□□□□ -0.81
HMGB3P31-201ENST00000413333 ARHGEF1Q92888 912 aaKnown RBP9.99□□□□□ -0.81
HMGB3P31-201ENST00000413333 TMEM106CQ9BVX2 250 aa9.98□□□□□ -0.81
HMGB3P31-201ENST00000413333 MS4A4AQ96JQ5 239 aa9.97□□□□□ -0.81
HMGB3P31-201ENST00000413333 LARP6Q9BRS8 491 aaKnown RBP9.97□□□□□ -0.81
HMGB3P31-201ENST00000413333 PDE4AP27815 886 aa9.95□□□□□ -0.82
HMGB3P31-201ENST00000413333 NCKAP5LQ9HCH0 1330 aa9.95□□□□□ -0.82
HMGB3P31-201ENST00000413333 MKRN3Q13064 507 aaKnown RBP9.94□□□□□ -0.82
HMGB3P31-201ENST00000413333 MS4A3Q96HJ5 214 aa9.94□□□□□ -0.82
HMGB3P31-201ENST00000413333 TRPC6Q9Y210 931 aa9.94□□□□□ -0.82
HMGB3P31-201ENST00000413333 SEMA3EO15041 775 aa9.93□□□□□ -0.82
HMGB3P31-201ENST00000413333 DDX27Q96GQ7 796 aaKnown RBP9.89□□□□□ -0.83
HMGB3P31-201ENST00000413333 TESPA1A2RU30 521 aaPredicted RBP9.88□□□□□ -0.83
HMGB3P31-201ENST00000413333 CRISPLD2Q9H0B8 497 aa9.88□□□□□ -0.83
HMGB3P31-201ENST00000413333 MFSD10Q14728 455 aa9.87□□□□□ -0.83
HMGB3P31-201ENST00000413333 ZC3H15Q8WU90 426 aaKnown RBP9.87□□□□□ -0.83
HMGB3P31-201ENST00000413333 GTF3C3Q9Y5Q9 886 aa9.87□□□□□ -0.83
HMGB3P31-201ENST00000413333 C19orf67A6NJJ6 358 aa9.86□□□□□ -0.83
HMGB3P31-201ENST00000413333 TTLL13PA6NNM8 815 aa9.84□□□□□ -0.83
HMGB3P31-201ENST00000413333 TIE1P35590 1138 aa9.84□□□□□ -0.83
HMGB3P31-201ENST00000413333 TMEM132AQ24JP5 1023 aa9.84□□□□□ -0.83
HMGB3P31-201ENST00000413333 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.84□□□□□ -0.83
HMGB3P31-201ENST00000413333 SMYD5Q6GMV2 418 aa9.83□□□□□ -0.84
HMGB3P31-201ENST00000413333 SLC24A3Q9HC58 644 aa9.8□□□□□ -0.84
HMGB3P31-201ENST00000413333 BMP2KQ9NSY1 1161 aaPredicted RBP9.8□□□□□ -0.84
HMGB3P31-201ENST00000413333 TRIM35Q9UPQ4 493 aa9.79□□□□□ -0.84
HMGB3P31-201ENST00000413333 CAMK2BQ13554 666 aa9.78□□□□□ -0.84
HMGB3P31-201ENST00000413333 PPP1R15BQ5SWA1 713 aa9.78□□□□□ -0.84
HMGB3P31-201ENST00000413333 SP7Q8TDD2 431 aaPredicted RBP9.78□□□□□ -0.84
HMGB3P31-201ENST00000413333 TIMELESSQ9UNS1 1208 aa9.78□□□□□ -0.84
HMGB3P31-201ENST00000413333 BRPF1P55201 1214 aaPredicted RBP9.77□□□□□ -0.85
HMGB3P31-201ENST00000413333 ARIH1Q9Y4X5 557 aaPredicted RBP9.77□□□□□ -0.85
HMGB3P31-201ENST00000413333 GALR2O43603 387 aaPredicted RBP9.76□□□□□ -0.85
HMGB3P31-201ENST00000413333 DPY19L2Q6NUT2 758 aa9.76□□□□□ -0.85
HMGB3P31-201ENST00000413333 NEUROD2Q15784 382 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms