RNA–Protein interactions for RNA: ENST00000397030.5

MCF2L-208, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 2 BASIC

Gene MCF2L, Length 6,580 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-208ENST00000397030 NCBP3Q53F19 620 aaKnown RBP23.3■■□□□ 1.32
MCF2L-208ENST00000397030 TPRNQ4KMQ1 711 aa23.29■■□□□ 1.32
MCF2L-208ENST00000397030 DDX10Q13206 875 aaKnown RBP23.28■■□□□ 1.32
MCF2L-208ENST00000397030 SCRIBQ14160 1630 aa23.28■■□□□ 1.32
MCF2L-208ENST00000397030 FKBP8Q14318 412 aa23.27■■□□□ 1.32
MCF2L-208ENST00000397030 EIF5BO60841 1220 aaKnown RBP23.22■■□□□ 1.31
MCF2L-208ENST00000397030 RGL3Q3MIN7 710 aa23.22■■□□□ 1.31
MCF2L-208ENST00000397030 SENP3-EIF4A1A0A087X0R7 540 aa23.19■■□□□ 1.3
MCF2L-208ENST00000397030 LAS1LQ9Y4W2 734 aaKnown RBP23.17■■□□□ 1.3
MCF2L-208ENST00000397030 MLECQ14165 292 aa23.17■■□□□ 1.3
MCF2L-208ENST00000397030 HIRIP3Q9BW71 556 aaPredicted RBP23.16■■□□□ 1.3
MCF2L-208ENST00000397030 RRP7BPQ9NSQ0 103 aa23.16■■□□□ 1.3
MCF2L-208ENST00000397030 MTUS2Q5JR59 1369 aa23.13■■□□□ 1.29
MCF2L-208ENST00000397030 CCDC136Q96JN2 1154 aa23.11■■□□□ 1.29
MCF2L-208ENST00000397030 MRS2Q9HD23 443 aa23.08■■□□□ 1.28
MCF2L-208ENST00000397030 IRX6P78412 446 aaPredicted RBP23.07■■□□□ 1.28
MCF2L-208ENST00000397030 NBR1Q14596 966 aa23.07■■□□□ 1.28
MCF2L-208ENST00000397030 SOX12O15370 315 aa23.06■■□□□ 1.28
MCF2L-208ENST00000397030 CLSTN1O94985 981 aa23.05■■□□□ 1.28
MCF2L-208ENST00000397030 POGKQ9P215 609 aa23.04■■□□□ 1.28
MCF2L-208ENST00000397030 PLEKHD1A6NEE1 506 aa23.04■■□□□ 1.28
MCF2L-208ENST00000397030 GOLGA2Q08379 1002 aa23.02■■□□□ 1.28
MCF2L-208ENST00000397030 TNNT2P45379 298 aaPredicted RBP23■■□□□ 1.27
MCF2L-208ENST00000397030 ISY1Q9ULR0 285 aaKnown RBP23■■□□□ 1.27
MCF2L-208ENST00000397030 NEUROD2Q15784 382 aa22.99■■□□□ 1.27
MCF2L-208ENST00000397030 ERCC6Q03468 1493 aa22.99■■□□□ 1.27
MCF2L-208ENST00000397030 NCLP19338 710 aaKnown RBP22.98■■□□□ 1.27
MCF2L-208ENST00000397030 ZRSR1Q15695 479 aaKnown RBP22.95■■□□□ 1.27
MCF2L-208ENST00000397030 CFAP53Q96M91 514 aa22.95■■□□□ 1.26
MCF2L-208ENST00000397030 NAP1L2Q9ULW6 460 aaPredicted RBP22.94■■□□□ 1.26
MCF2L-208ENST00000397030 OS9Q13438 667 aaPredicted RBP22.93■■□□□ 1.26
MCF2L-208ENST00000397030 CCDC9Q9Y3X0 531 aaKnown RBP22.9■■□□□ 1.26
MCF2L-208ENST00000397030 FTSJ3Q8IY81 847 aaKnown RBP22.87■■□□□ 1.25
MCF2L-208ENST00000397030 MAPK8IP3Q9UPT6 1336 aa22.86■■□□□ 1.25
MCF2L-208ENST00000397030 CASC1Q6TDU7 716 aa22.86■■□□□ 1.25
MCF2L-208ENST00000397030 KNSTRNQ9Y448 316 aa22.84■■□□□ 1.25
MCF2L-208ENST00000397030 ZNF330Q9Y3S2 320 aaPredicted RBP22.81■■□□□ 1.24
MCF2L-208ENST00000397030 SAFB2Q14151 953 aaKnown RBP eCLIP22.81■■□□□ 1.24
MCF2L-208ENST00000397030 CFDP1Q9UEE9 299 aaPredicted RBP22.8■■□□□ 1.24
MCF2L-208ENST00000397030 U2SURPO15042 1029 aaKnown RBP22.8■■□□□ 1.24
MCF2L-208ENST00000397030 FGD1P98174 961 aa22.8■■□□□ 1.24
MCF2L-208ENST00000397030 EIF4G2P78344 907 aaKnown RBP eCLIP22.78■■□□□ 1.24
MCF2L-208ENST00000397030 ACIN1Q9UKV3 1341 aaKnown RBP22.78■■□□□ 1.24
MCF2L-208ENST00000397030 PAK3O75914 559 aaPredicted RBP22.76■■□□□ 1.23
MCF2L-208ENST00000397030 ZBTB4Q9P1Z0 1013 aaPredicted RBP22.75■■□□□ 1.23
MCF2L-208ENST00000397030 KCNJ4P48050 445 aa22.73■■□□□ 1.23
MCF2L-208ENST00000397030 CSB-PGBD3P0DP91 1061 aa22.72■■□□□ 1.23
MCF2L-208ENST00000397030 CARD11Q9BXL7 1154 aa22.71■■□□□ 1.23
MCF2L-208ENST00000397030 PTMAP06454 111 aaKnown RBP22.71■■□□□ 1.23
MCF2L-208ENST00000397030 FRAT1Q92837 279 aaPredicted RBP22.71■■□□□ 1.23
MCF2L-208ENST00000397030 NUDCQ9Y266 331 aa22.7■■□□□ 1.23
MCF2L-208ENST00000397030 CC2D1BQ5T0F9 858 aaKnown RBP22.7■■□□□ 1.22
MCF2L-208ENST00000397030 AMER1Q5JTC6 1135 aaPredicted RBP22.69■■□□□ 1.22
MCF2L-208ENST00000397030 BECN1Q14457 450 aa22.69■■□□□ 1.22
MCF2L-208ENST00000397030 PLCB2Q00722 1185 aa22.68■■□□□ 1.22
MCF2L-208ENST00000397030 GOLGA6L22H0YM25 854 aa22.67■■□□□ 1.22
MCF2L-208ENST00000397030 CDCA8Q53HL2 280 aa22.67■■□□□ 1.22
MCF2L-208ENST00000397030 SRPK2P78362 688 aaKnown RBP22.67■■□□□ 1.22
MCF2L-208ENST00000397030 STK26Q9P289 416 aa22.66■■□□□ 1.22
MCF2L-208ENST00000397030 TMX4Q9H1E5 349 aaPredicted RBP22.65■■□□□ 1.22
MCF2L-208ENST00000397030 AEBP2Q6ZN18 517 aaPredicted RBP22.63■■□□□ 1.21
MCF2L-208ENST00000397030 TRIM44Q96DX7 344 aaPredicted RBP22.63■■□□□ 1.21
MCF2L-208ENST00000397030 ZCCHC6Q5VYS8 1495 aaKnown RBP22.62■■□□□ 1.21
MCF2L-208ENST00000397030 RSF1Q96T23 1441 aaPredicted RBP22.61■■□□□ 1.21
MCF2L-208ENST00000397030 HDGFP51858 240 aaKnown RBP22.6■■□□□ 1.21
MCF2L-208ENST00000397030 GGT6Q6P531 493 aa22.6■■□□□ 1.21
MCF2L-208ENST00000397030 DNTTIP2Q5QJE6 756 aaKnown RBP22.59■■□□□ 1.21
MCF2L-208ENST00000397030 PRM3Q9NNZ6 103 aa22.59■■□□□ 1.21
MCF2L-208ENST00000397030 G3V3G9 751 aa22.56■■□□□ 1.2
MCF2L-208ENST00000397030 DCAF8Q5TAQ9 597 aa22.56■■□□□ 1.2
MCF2L-208ENST00000397030 EIF4G1Q04637 1599 aaKnown RBP22.55■■□□□ 1.2
MCF2L-208ENST00000397030 RTF1Q92541 710 aaKnown RBP22.53■■□□□ 1.2
MCF2L-208ENST00000397030 KANK1Q14678 1352 aa22.52■■□□□ 1.2
MCF2L-208ENST00000397030 CLIP1P30622 1438 aa22.51■■□□□ 1.19
MCF2L-208ENST00000397030 RGS3P49796 1198 aa22.51■■□□□ 1.19
MCF2L-208ENST00000397030 GLIPR1L2Q4G1C9 344 aa22.5■■□□□ 1.19
MCF2L-208ENST00000397030 DDRGK1Q96HY6 314 aa22.5■■□□□ 1.19
MCF2L-208ENST00000397030 APBB1O00213 710 aa22.49■■□□□ 1.19
MCF2L-208ENST00000397030 GNL2Q13823 731 aaKnown RBP22.47■■□□□ 1.19
MCF2L-208ENST00000397030 HSP90AB1P08238 724 aaKnown RBP22.45■■□□□ 1.19
MCF2L-208ENST00000397030 MSH5O43196 834 aa22.44■■□□□ 1.18
MCF2L-208ENST00000397030 CHMP3Q9Y3E7 222 aa22.44■■□□□ 1.18
MCF2L-208ENST00000397030 PNNQ9H307 717 aaKnown RBP22.44■■□□□ 1.18
MCF2L-208ENST00000397030 GOLGA6L6A8MZA4 724 aa22.42■■□□□ 1.18
MCF2L-208ENST00000397030 DCAF11Q8TEB1 546 aa22.42■■□□□ 1.18
MCF2L-208ENST00000397030 PDE4CQ08493 712 aa22.41■■□□□ 1.18
MCF2L-208ENST00000397030 ANO8Q9HCE9 1232 aaPredicted RBP22.4■■□□□ 1.18
MCF2L-208ENST00000397030 MORC1Q86VD1 984 aa22.39■■□□□ 1.17
MCF2L-208ENST00000397030 GOLGA6L4A6NEF3 574 aa22.39■■□□□ 1.17
MCF2L-208ENST00000397030 MIER1Q8N108 512 aa22.38■■□□□ 1.17
MCF2L-208ENST00000397030 PHF23Q9BUL5 403 aaPredicted RBP22.38■■□□□ 1.17
MCF2L-208ENST00000397030 NUTM2DQ5VT03 806 aaPredicted RBP22.37■■□□□ 1.17
MCF2L-208ENST00000397030 MEX3CQ5U5Q3 659 aaKnown RBP22.37■■□□□ 1.17
MCF2L-208ENST00000397030 KLHL34Q8N239 644 aa22.36■■□□□ 1.17
MCF2L-208ENST00000397030 CCNB3Q8WWL7 1395 aa22.36■■□□□ 1.17
MCF2L-208ENST00000397030 TAF7LQ5H9L4 462 aa22.35■■□□□ 1.17
MCF2L-208ENST00000397030 SPRYD3Q8NCJ5 442 aa22.34■■□□□ 1.17
MCF2L-208ENST00000397030 HDGFL2Q7Z4V5 671 aaPredicted RBP22.33■■□□□ 1.17
MCF2L-208ENST00000397030 TMF1P82094 1093 aa22.33■■□□□ 1.16
MCF2L-208ENST00000397030 NUTM2FA1L443 756 aa22.32■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 123.6 ms