RNA–Protein interactions for RNA: ENST00000396594.7

GNE-202, Transcript of glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase, humanhuman

TSL 1 (best) BASIC

Gene GNE, Length 5,298 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GNE-202ENST00000396594 CFDP1Q9UEE9 299 aaPredicted RBP20.86■□□□□ 0.93
GNE-202ENST00000396594 ANP32BQ92688 251 aaKnown RBP20.86■□□□□ 0.93
GNE-202ENST00000396594 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.84■□□□□ 0.932e-6■□□□□ 8.5
GNE-202ENST00000396594 KANK1Q14678 1352 aa20.83■□□□□ 0.93
GNE-202ENST00000396594 CFAP53Q96M91 514 aa20.83■□□□□ 0.93
GNE-202ENST00000396594 TOP2AP11388 1531 aaKnown RBP20.82■□□□□ 0.92
GNE-202ENST00000396594 HDGFP51858 240 aaKnown RBP20.82■□□□□ 0.92
GNE-202ENST00000396594 CARMIL1Q5VZK9 1371 aa20.81■□□□□ 0.92
GNE-202ENST00000396594 CHIC2Q9UKJ5 165 aa20.81■□□□□ 0.92
GNE-202ENST00000396594 ABCC8Q09428 1581 aa20.8■□□□□ 0.92
GNE-202ENST00000396594 CCNB3Q8WWL7 1395 aa20.79■□□□□ 0.92
GNE-202ENST00000396594 PPP1R15AO75807 674 aaPredicted RBP20.79■□□□□ 0.92
GNE-202ENST00000396594 MYH16Q9H6N6 1097 aa20.79■□□□□ 0.92
GNE-202ENST00000396594 CHMP4BQ9H444 224 aaKnown RBP20.77■□□□□ 0.92
GNE-202ENST00000396594 HNRNPUQ00839 825 aaKnown RBP eCLIP20.77■□□□□ 0.91
GNE-202ENST00000396594 CUX2O14529 1486 aa20.76■□□□□ 0.91
GNE-202ENST00000396594 FMN1Q68DA7 1419 aa20.75■□□□□ 0.91
GNE-202ENST00000396594 PNNQ9H307 717 aaKnown RBP20.73■□□□□ 0.91
GNE-202ENST00000396594 MRS2Q9HD23 443 aa20.7■□□□□ 0.9
GNE-202ENST00000396594 HSP90AA1P07900 732 aaKnown RBP20.69■□□□□ 0.9
GNE-202ENST00000396594 DDX10Q13206 875 aaKnown RBP20.69■□□□□ 0.9
GNE-202ENST00000396594 NPM2Q86SE8 214 aaKnown RBP20.68■□□□□ 0.9
GNE-202ENST00000396594 MS4A1P11836 297 aa20.66■□□□□ 0.9
GNE-202ENST00000396594 ANP32EQ9BTT0 268 aa20.66■□□□□ 0.9
GNE-202ENST00000396594 ARHGAP35Q9NRY4 1499 aa20.64■□□□□ 0.9
GNE-202ENST00000396594 CECR2Q9BXF3 1484 aa20.64■□□□□ 0.9
GNE-202ENST00000396594 VPS8Q8N3P4 1428 aa20.64■□□□□ 0.9
GNE-202ENST00000396594 CCDC88BA6NC98 1476 aa20.64■□□□□ 0.89
GNE-202ENST00000396594 RSPH4AQ5TD94 716 aa20.62■□□□□ 0.89
GNE-202ENST00000396594 FAM9BQ8IZU0 186 aa20.62■□□□□ 0.89
GNE-202ENST00000396594 NUDCQ9Y266 331 aa20.62■□□□□ 0.89
GNE-202ENST00000396594 RRP7BPQ9NSQ0 103 aa20.62■□□□□ 0.89
GNE-202ENST00000396594 CCDC136Q96JN2 1154 aa20.61■□□□□ 0.89
GNE-202ENST00000396594 KCNH8Q96L42 1107 aa20.61■□□□□ 0.89
GNE-202ENST00000396594 KNSTRNQ9Y448 316 aa20.61■□□□□ 0.89
GNE-202ENST00000396594 KDM2AQ9Y2K7 1162 aa20.6■□□□□ 0.89
GNE-202ENST00000396594 DDRGK1Q96HY6 314 aa20.59■□□□□ 0.89
GNE-202ENST00000396594 MROH2BQ7Z745 1585 aa20.58■□□□□ 0.89
GNE-202ENST00000396594 EIF4G1Q04637 1599 aaKnown RBP20.58■□□□□ 0.88
GNE-202ENST00000396594 HAP1P54257 671 aaPredicted RBP20.57■□□□□ 0.88
GNE-202ENST00000396594 SOGA1O94964 1423 aa20.57■□□□□ 0.88
GNE-202ENST00000396594 CADPSQ9ULU8 1353 aa20.56■□□□□ 0.88
GNE-202ENST00000396594 FKBP8Q14318 412 aa20.56■□□□□ 0.88
GNE-202ENST00000396594 CFAP44Q96MT7 982 aa20.52■□□□□ 0.88
GNE-202ENST00000396594 BECN1Q14457 450 aa20.52■□□□□ 0.87
GNE-202ENST00000396594 CARD11Q9BXL7 1154 aa20.52■□□□□ 0.87
GNE-202ENST00000396594 ARID4BQ4LE39 1312 aaPredicted RBP20.5■□□□□ 0.87
GNE-202ENST00000396594 CHMP4AQ9BY43 222 aa20.5■□□□□ 0.87
GNE-202ENST00000396594 RAPGEF2Q9Y4G8 1499 aa20.49■□□□□ 0.87
GNE-202ENST00000396594 SETD5Q9C0A6 1442 aa20.48■□□□□ 0.87
GNE-202ENST00000396594 CASC1Q6TDU7 716 aa20.48■□□□□ 0.87
GNE-202ENST00000396594 SMARCA4P51532 1647 aa20.47■□□□□ 0.87
GNE-202ENST00000396594 TMF1P82094 1093 aa20.47■□□□□ 0.87
GNE-202ENST00000396594 MAPK8IP3Q9UPT6 1336 aa20.46■□□□□ 0.87
GNE-202ENST00000396594 CCDC18Q5T9S5 1454 aa20.46■□□□□ 0.87
GNE-202ENST00000396594 ANKRD30AQ9BXX3 1397 aa20.45■□□□□ 0.86
GNE-202ENST00000396594 C14orf37Q86TY3 774 aa20.45■□□□□ 0.86
GNE-202ENST00000396594 EFCAB2Q5VUJ9 269 aa20.43■□□□□ 0.86
GNE-202ENST00000396594 ATAD2BQ9ULI0 1458 aa20.43■□□□□ 0.86
GNE-202ENST00000396594 POGKQ9P215 609 aa20.42■□□□□ 0.86
GNE-202ENST00000396594 EIF3AQ14152 1382 aaKnown RBP20.42■□□□□ 0.86
GNE-202ENST00000396594 GOLGA6L22H0YM25 854 aa20.38■□□□□ 0.85
GNE-202ENST00000396594 NCLP19338 710 aaKnown RBP20.37■□□□□ 0.85
GNE-202ENST00000396594 CCER2I3L3R5 266 aa20.35■□□□□ 0.85
GNE-202ENST00000396594 CALD1Q05682 793 aaKnown RBP20.33■□□□□ 0.84
GNE-202ENST00000396594 RGL3Q3MIN7 710 aa20.31■□□□□ 0.84
GNE-202ENST00000396594 ERICH6BQ5W0A0 696 aa20.3■□□□□ 0.84
GNE-202ENST00000396594 PLPPR3Q6T4P5 718 aa20.3■□□□□ 0.84
GNE-202ENST00000396594 UACAQ9BZF9 1416 aa20.29■□□□□ 0.84
GNE-202ENST00000396594 SCAF1Q9H7N4 1312 aaKnown RBP20.29■□□□□ 0.84
GNE-202ENST00000396594 ROCK2O75116 1388 aaKnown RBP20.29■□□□□ 0.84
GNE-202ENST00000396594 FTSJ3Q8IY81 847 aaKnown RBP20.27■□□□□ 0.84
GNE-202ENST00000396594 BCL11AQ9H165 835 aa20.27■□□□□ 0.83
GNE-202ENST00000396594 CDK11BP21127 795 aaKnown RBP20.26■□□□□ 0.83
GNE-202ENST00000396594 WIZO95785 1651 aa20.25■□□□□ 0.83
GNE-202ENST00000396594 HDGFL2Q7Z4V5 671 aaPredicted RBP20.24■□□□□ 0.83
GNE-202ENST00000396594 FANCD2Q9BXW9 1451 aa20.22■□□□□ 0.83
GNE-202ENST00000396594 RALBP1Q15311 655 aa20.21■□□□□ 0.83
GNE-202ENST00000396594 HDAC5Q9UQL6 1122 aa20.21■□□□□ 0.83
GNE-202ENST00000396594 STAC3Q96MF2 364 aa20.2■□□□□ 0.82
GNE-202ENST00000396594 KTN1Q86UP2 1357 aaKnown RBP20.2■□□□□ 0.82
GNE-202ENST00000396594 MIER1Q8N108 512 aa20.19■□□□□ 0.82
GNE-202ENST00000396594 PPM1GO15355 546 aaPredicted RBP20.18■□□□□ 0.82
GNE-202ENST00000396594 PPP4R2Q9NY27 417 aa20.18■□□□□ 0.82
GNE-202ENST00000396594 PHLDB1Q86UU1 1377 aa20.18■□□□□ 0.82
GNE-202ENST00000396594 SALL2Q9Y467 1007 aaPredicted RBP20.18■□□□□ 0.82
GNE-202ENST00000396594 NCAPD3P42695 1498 aa20.16■□□□□ 0.82
GNE-202ENST00000396594 GLIPR1L2Q4G1C9 344 aa20.15■□□□□ 0.82
GNE-202ENST00000396594 DCAF11Q8TEB1 546 aa20.14■□□□□ 0.81
GNE-202ENST00000396594 CUX1P39880 1505 aa20.14■□□□□ 0.81
GNE-202ENST00000396594 TDRD9Q8NDG6 1382 aaKnown RBP20.13■□□□□ 0.81
GNE-202ENST00000396594 IPO8O15397 1037 aaKnown RBP20.12■□□□□ 0.81
GNE-202ENST00000396594 ZRSR1Q15695 479 aaKnown RBP20.12■□□□□ 0.81
GNE-202ENST00000396594 NUP155O75694 1391 aa20.1■□□□□ 0.81
GNE-202ENST00000396594 ZBTB7CA1YPR0 619 aa20.1■□□□□ 0.81
GNE-202ENST00000396594 PKD2Q13563 968 aa20.1■□□□□ 0.81
GNE-202ENST00000396594 MORC1Q86VD1 984 aa20.1■□□□□ 0.81
GNE-202ENST00000396594 SPAG9O60271 1321 aaKnown RBP20.08■□□□□ 0.81
GNE-202ENST00000396594 PTMSP20962 102 aa20.08■□□□□ 0.8
GNE-202ENST00000396594 EID1Q9Y6B2 187 aa20.06■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms