RNA–Protein interactions for RNA: ENST00000374541.3

PTPN3-202, Transcript of protein tyrosine phosphatase, non-receptor type 3, humanhuman

APPRIS P1 TSL 5 BASIC

Gene PTPN3, Length 6,703 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN3-202ENST00000374541 DIEXFQ68CQ4 756 aaKnown RBP8.68□□□□□ -1.02
PTPN3-202ENST00000374541 NPHP1O15259 732 aa8.67□□□□□ -1.02
PTPN3-202ENST00000374541 GLIPR1L2Q4G1C9 344 aa8.67□□□□□ -1.02
PTPN3-202ENST00000374541 MROH2BQ7Z745 1585 aa8.66□□□□□ -1.02
PTPN3-202ENST00000374541 RSF1Q96T23 1441 aaPredicted RBP8.64□□□□□ -1.03
PTPN3-202ENST00000374541 SF3B2Q13435 895 aaKnown RBP8.62□□□□□ -1.03
PTPN3-202ENST00000374541 CARMIL2Q6F5E8 1435 aa8.61□□□□□ -1.03
PTPN3-202ENST00000374541 ANP32BQ92688 251 aaKnown RBP8.61□□□□□ -1.03
PTPN3-202ENST00000374541 ANP32AP39687 249 aaKnown RBP8.61□□□□□ -1.03
PTPN3-202ENST00000374541 CEP164Q9UPV0 1460 aa8.61□□□□□ -1.03
PTPN3-202ENST00000374541 GGT6Q6P531 493 aa8.6□□□□□ -1.03
PTPN3-202ENST00000374541 WIZO95785 1651 aa8.6□□□□□ -1.03
PTPN3-202ENST00000374541 ARXQ96QS3 562 aa8.6□□□□□ -1.03
PTPN3-202ENST00000374541 EID1Q9Y6B2 187 aa8.59□□□□□ -1.03
PTPN3-202ENST00000374541 ANP32CO43423 234 aa8.59□□□□□ -1.03
PTPN3-202ENST00000374541 PIP4K2BP78356 416 aa8.59□□□□□ -1.03
PTPN3-202ENST00000374541 PEG3Q9GZU2 1588 aa8.59□□□□□ -1.03
PTPN3-202ENST00000374541 KLHL34Q8N239 644 aa8.57□□□□□ -1.04
PTPN3-202ENST00000374541 CSRNP3Q8WYN3 585 aa8.56□□□□□ -1.04
PTPN3-202ENST00000374541 TDRD9Q8NDG6 1382 aaKnown RBP8.56□□□□□ -1.04
PTPN3-202ENST00000374541 SOGA1O94964 1423 aa8.54□□□□□ -1.04
PTPN3-202ENST00000374541 CHIC2Q9UKJ5 165 aa8.54□□□□□ -1.04
PTPN3-202ENST00000374541 GTF3C3Q9Y5Q9 886 aa8.53□□□□□ -1.04
PTPN3-202ENST00000374541 CANXP27824 592 aaKnown RBP8.53□□□□□ -1.04
PTPN3-202ENST00000374541 CFDP1Q9UEE9 299 aaPredicted RBP8.53□□□□□ -1.04
PTPN3-202ENST00000374541 MTUS2Q5JR59 1369 aa8.53□□□□□ -1.04
PTPN3-202ENST00000374541 SMARCA4P51532 1647 aa8.53□□□□□ -1.04
PTPN3-202ENST00000374541 CADPSQ9ULU8 1353 aa8.51□□□□□ -1.05
PTPN3-202ENST00000374541 NEUROD1Q13562 356 aa8.5□□□□□ -1.05
PTPN3-202ENST00000374541 JPH4Q96JJ6 628 aa8.5□□□□□ -1.05
PTPN3-202ENST00000374541 POGKQ9P215 609 aa8.49□□□□□ -1.05
PTPN3-202ENST00000374541 MSH5O43196 834 aa8.49□□□□□ -1.05
PTPN3-202ENST00000374541 BAZ1AQ9NRL2 1556 aaPredicted RBP8.49□□□□□ -1.05
PTPN3-202ENST00000374541 KANK1Q14678 1352 aa8.48□□□□□ -1.05
PTPN3-202ENST00000374541 WRNQ14191 1432 aaPredicted RBP eCLIP8.48□□□□□ -1.05
PTPN3-202ENST00000374541 EFCAB2Q5VUJ9 269 aa8.48□□□□□ -1.05
PTPN3-202ENST00000374541 UPF2Q9HAU5 1272 aaKnown RBP8.47□□□□□ -1.05
PTPN3-202ENST00000374541 EIF5BO60841 1220 aaKnown RBP8.47□□□□□ -1.05
PTPN3-202ENST00000374541 CSB-PGBD3P0DP91 1061 aa8.47□□□□□ -1.05
PTPN3-202ENST00000374541 CC2D2AQ9P2K1 1620 aa8.46□□□□□ -1.05
PTPN3-202ENST00000374541 KIF27Q86VH2 1401 aa8.46□□□□□ -1.06
PTPN3-202ENST00000374541 PAK3O75914 559 aaPredicted RBP8.46□□□□□ -1.06
PTPN3-202ENST00000374541 DMRT2Q9Y5R5 561 aa8.46□□□□□ -1.06
PTPN3-202ENST00000374541 DNAJC5Q9H3Z4 198 aa8.45□□□□□ -1.06
PTPN3-202ENST00000374541 BCL11AQ9H165 835 aa8.45□□□□□ -1.06
PTPN3-202ENST00000374541 ACIN1Q9UKV3 1341 aaKnown RBP8.45□□□□□ -1.06
PTPN3-202ENST00000374541 TMX4Q9H1E5 349 aaPredicted RBP8.44□□□□□ -1.06
PTPN3-202ENST00000374541 CUX2O14529 1486 aa8.44□□□□□ -1.06
PTPN3-202ENST00000374541 CLIP1P30622 1438 aa8.44□□□□□ -1.06
PTPN3-202ENST00000374541 FANCD2Q9BXW9 1451 aa8.43□□□□□ -1.06
PTPN3-202ENST00000374541 NUTM2BA6NNL0 878 aaPredicted RBP8.42□□□□□ -1.06
PTPN3-202ENST00000374541 NUTM2EB1AL46 878 aaPredicted RBP8.42□□□□□ -1.06
PTPN3-202ENST00000374541 HSP90AA1P07900 732 aaKnown RBP8.42□□□□□ -1.06
PTPN3-202ENST00000374541 NUTM2AQ8IVF1 878 aaPredicted RBP8.42□□□□□ -1.06
PTPN3-202ENST00000374541 PPP1R1BQ9UD71 204 aaPredicted RBP8.42□□□□□ -1.06
PTPN3-202ENST00000374541 KDM2AQ9Y2K7 1162 aa8.42□□□□□ -1.06
PTPN3-202ENST00000374541 ATF3P18847 181 aa8.42□□□□□ -1.06
PTPN3-202ENST00000374541 PTPRGP23470 1445 aa8.41□□□□□ -1.06
PTPN3-202ENST00000374541 EVA1CP58658 441 aa8.41□□□□□ -1.06
PTPN3-202ENST00000374541 NUTM2DQ5VT03 806 aaPredicted RBP8.4□□□□□ -1.06
PTPN3-202ENST00000374541 LOC105371045A0A1W2PR82 267 aa8.4□□□□□ -1.06
PTPN3-202ENST00000374541 WASHC2CQ9Y4E1 1318 aa8.4□□□□□ -1.06
PTPN3-202ENST00000374541 ANP32EQ9BTT0 268 aa8.39□□□□□ -1.07
PTPN3-202ENST00000374541 UBAP1LF5GYI3 381 aa8.38□□□□□ -1.07
PTPN3-202ENST00000374541 SOX12O15370 315 aa8.38□□□□□ -1.07
PTPN3-202ENST00000374541 TMC1Q8TDI8 760 aa8.38□□□□□ -1.07
PTPN3-202ENST00000374541 RGL3Q3MIN7 710 aa8.38□□□□□ -1.07
PTPN3-202ENST00000374541 ABCC8Q09428 1581 aa8.37□□□□□ -1.07
PTPN3-202ENST00000374541 POGZQ7Z3K3 1410 aa8.37□□□□□ -1.07
PTPN3-202ENST00000374541 MRC2Q9UBG0 1479 aa8.36□□□□□ -1.07
PTPN3-202ENST00000374541 KIF3BO15066 747 aa8.36□□□□□ -1.07
PTPN3-202ENST00000374541 CARMIL1Q5VZK9 1371 aa8.35□□□□□ -1.07
PTPN3-202ENST00000374541 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.35□□□□□ -1.07
PTPN3-202ENST00000374541 CCNB3Q8WWL7 1395 aa8.35□□□□□ -1.07
PTPN3-202ENST00000374541 TOP2AP11388 1531 aaKnown RBP8.35□□□□□ -1.07
PTPN3-202ENST00000374541 TNNT2P45379 298 aaPredicted RBP8.35□□□□□ -1.07
PTPN3-202ENST00000374541 PPM1GO15355 546 aaPredicted RBP8.34□□□□□ -1.07
PTPN3-202ENST00000374541 SPAG9O60271 1321 aaKnown RBP8.34□□□□□ -1.07
PTPN3-202ENST00000374541 STK26Q9P289 416 aa8.34□□□□□ -1.07
PTPN3-202ENST00000374541 ATAD2BQ9ULI0 1458 aa8.33□□□□□ -1.08
PTPN3-202ENST00000374541 CDK11BP21127 795 aaKnown RBP8.33□□□□□ -1.08
PTPN3-202ENST00000374541 RRP7BPQ9NSQ0 103 aa8.32□□□□□ -1.08
PTPN3-202ENST00000374541 TOM1O60784 492 aa8.32□□□□□ -1.08
PTPN3-202ENST00000374541 SAFB2Q14151 953 aaKnown RBP eCLIP8.31□□□□□ -1.08
PTPN3-202ENST00000374541 PROSER2Q86WR7 435 aaPredicted RBP8.31□□□□□ -1.08
PTPN3-202ENST00000374541 G3V3G9 751 aa8.3□□□□□ -1.08
PTPN3-202ENST00000374541 DCAF8Q5TAQ9 597 aa8.3□□□□□ -1.08
PTPN3-202ENST00000374541 CCDC88BA6NC98 1476 aa8.3□□□□□ -1.08
PTPN3-202ENST00000374541 NGDNQ8NEJ9 315 aaKnown RBP8.29□□□□□ -1.08
PTPN3-202ENST00000374541 DDRGK1Q96HY6 314 aa8.29□□□□□ -1.08
PTPN3-202ENST00000374541 AQRO60306 1485 aaKnown RBP eCLIP8.29□□□□□ -1.08
PTPN3-202ENST00000374541 NUTM2FA1L443 756 aa8.29□□□□□ -1.08
PTPN3-202ENST00000374541 FKBP8Q14318 412 aa8.29□□□□□ -1.08
PTPN3-202ENST00000374541 EIF4G2P78344 907 aaKnown RBP eCLIP8.28□□□□□ -1.08
PTPN3-202ENST00000374541 NESP48681 1621 aa8.28□□□□□ -1.08
PTPN3-202ENST00000374541 ZNF330Q9Y3S2 320 aaPredicted RBP8.28□□□□□ -1.08
PTPN3-202ENST00000374541 SRPK2P78362 688 aaKnown RBP8.27□□□□□ -1.09
PTPN3-202ENST00000374541 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.27□□□□□ -1.09
PTPN3-202ENST00000374541 BECN1Q14457 450 aa8.27□□□□□ -1.09
PTPN3-202ENST00000374541 GOLGA6L22H0YM25 854 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms