RNA–Protein interactions for RNA: ENST00000370225.3

ABCA4-201, Transcript of ATP binding cassette subfamily A member 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ABCA4, Length 7,309 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4-201ENST00000370225 PPM1GO15355 546 aaPredicted RBP11.45□□□□□ -0.58
ABCA4-201ENST00000370225 LMOD2Q6P5Q4 547 aa11.44□□□□□ -0.58
ABCA4-201ENST00000370225 ACIN1Q9UKV3 1341 aaKnown RBP11.42□□□□□ -0.58
ABCA4-201ENST00000370225 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.42□□□□□ -0.58
ABCA4-201ENST00000370225 MRS2Q9HD23 443 aa11.42□□□□□ -0.58
ABCA4-201ENST00000370225 TULP1O00294 542 aaPredicted RBP11.42□□□□□ -0.58
ABCA4-201ENST00000370225 CCDC136Q96JN2 1154 aa11.41□□□□□ -0.58
ABCA4-201ENST00000370225 TRHP20396 242 aaPredicted RBP11.4□□□□□ -0.58
ABCA4-201ENST00000370225 MYH16Q9H6N6 1097 aa11.4□□□□□ -0.58
ABCA4-201ENST00000370225 NBR1Q14596 966 aa11.4□□□□□ -0.58
ABCA4-201ENST00000370225 EIF5BO60841 1220 aaKnown RBP11.38□□□□□ -0.59
ABCA4-201ENST00000370225 TPRNQ4KMQ1 711 aa11.37□□□□□ -0.59
ABCA4-201ENST00000370225 PLEKHD1A6NEE1 506 aa11.37□□□□□ -0.59
ABCA4-201ENST00000370225 TAOK2Q9UL54 1235 aa11.37□□□□□ -0.59
ABCA4-201ENST00000370225 LAS1LQ9Y4W2 734 aaKnown RBP11.36□□□□□ -0.59
ABCA4-201ENST00000370225 NPHP1O15259 732 aa11.36□□□□□ -0.59
ABCA4-201ENST00000370225 ERCC6Q03468 1493 aa11.35□□□□□ -0.59
ABCA4-201ENST00000370225 CDK11BP21127 795 aaKnown RBP11.34□□□□□ -0.59
ABCA4-201ENST00000370225 MLECQ14165 292 aa11.33□□□□□ -0.59
ABCA4-201ENST00000370225 TNNT2P45379 298 aaPredicted RBP11.33□□□□□ -0.6
ABCA4-201ENST00000370225 NEUROD2Q15784 382 aa11.32□□□□□ -0.6
ABCA4-201ENST00000370225 ZCCHC6Q5VYS8 1495 aaKnown RBP11.3□□□□□ -0.6
ABCA4-201ENST00000370225 EIF4G2P78344 907 aaKnown RBP eCLIP11.3□□□□□ -0.6
ABCA4-201ENST00000370225 SOX12O15370 315 aa11.29□□□□□ -0.6
ABCA4-201ENST00000370225 CFDP1Q9UEE9 299 aaPredicted RBP11.29□□□□□ -0.6
ABCA4-201ENST00000370225 CLIP1P30622 1438 aa11.29□□□□□ -0.6
ABCA4-201ENST00000370225 POGKQ9P215 609 aa11.29□□□□□ -0.6
ABCA4-201ENST00000370225 KNSTRNQ9Y448 316 aa11.25□□□□□ -0.61
ABCA4-201ENST00000370225 CFAP53Q96M91 514 aa11.25□□□□□ -0.61
ABCA4-201ENST00000370225 RB1CC1Q8TDY2 1594 aa11.25□□□□□ -0.61
ABCA4-201ENST00000370225 MIER1Q8N108 512 aa11.24□□□□□ -0.61
ABCA4-201ENST00000370225 CARD11Q9BXL7 1154 aa11.24□□□□□ -0.61
ABCA4-201ENST00000370225 RSF1Q96T23 1441 aaPredicted RBP11.23□□□□□ -0.61
ABCA4-201ENST00000370225 FTSJ3Q8IY81 847 aaKnown RBP11.23□□□□□ -0.61
ABCA4-201ENST00000370225 SAFB2Q14151 953 aaKnown RBP eCLIP11.23□□□□□ -0.61
ABCA4-201ENST00000370225 NCLP19338 710 aaKnown RBP11.22□□□□□ -0.61
ABCA4-201ENST00000370225 CC2D1BQ5T0F9 858 aaKnown RBP11.22□□□□□ -0.61
ABCA4-201ENST00000370225 EIF4G1Q04637 1599 aaKnown RBP11.22□□□□□ -0.61
ABCA4-201ENST00000370225 MAPK8IP3Q9UPT6 1336 aa11.21□□□□□ -0.62
ABCA4-201ENST00000370225 U2SURPO15042 1029 aaKnown RBP11.2□□□□□ -0.62
ABCA4-201ENST00000370225 BAZ1BQ9UIG0 1483 aaKnown RBP11.2□□□□□ -0.62
ABCA4-201ENST00000370225 FRAT1Q92837 279 aaPredicted RBP11.18□□□□□ -0.62
ABCA4-201ENST00000370225 OS9Q13438 667 aaPredicted RBP11.18□□□□□ -0.62
ABCA4-201ENST00000370225 NAP1L2Q9ULW6 460 aaPredicted RBP11.17□□□□□ -0.62
ABCA4-201ENST00000370225 NCBP3Q53F19 620 aaKnown RBP11.16□□□□□ -0.62
ABCA4-201ENST00000370225 CASC1Q6TDU7 716 aa11.16□□□□□ -0.62
ABCA4-201ENST00000370225 GOLGA2Q08379 1002 aa11.16□□□□□ -0.62
ABCA4-201ENST00000370225 CDCA8Q53HL2 280 aa11.15□□□□□ -0.62
ABCA4-201ENST00000370225 GOLGA3Q08378 1498 aa11.15□□□□□ -0.62
ABCA4-201ENST00000370225 STK26Q9P289 416 aa11.15□□□□□ -0.62
ABCA4-201ENST00000370225 ZRSR1Q15695 479 aaKnown RBP11.15□□□□□ -0.63
ABCA4-201ENST00000370225 DCAF1Q9Y4B6 1507 aa11.14□□□□□ -0.63
ABCA4-201ENST00000370225 CEP162Q5TB80 1403 aa11.14□□□□□ -0.63
ABCA4-201ENST00000370225 SIN3AQ96ST3 1273 aa11.14□□□□□ -0.63
ABCA4-201ENST00000370225 SRPK2P78362 688 aaKnown RBP11.14□□□□□ -0.63
ABCA4-201ENST00000370225 BECN1Q14457 450 aa11.13□□□□□ -0.63
ABCA4-201ENST00000370225 NUDCQ9Y266 331 aa11.13□□□□□ -0.63
ABCA4-201ENST00000370225 PAK3O75914 559 aaPredicted RBP11.13□□□□□ -0.63
ABCA4-201ENST00000370225 GGT6Q6P531 493 aa11.12□□□□□ -0.63
ABCA4-201ENST00000370225 CCDC180Q9P1Z9 1646 aa11.12□□□□□ -0.63
ABCA4-201ENST00000370225 DCAF11Q8TEB1 546 aa11.11□□□□□ -0.63
ABCA4-201ENST00000370225 ISY1Q9ULR0 285 aaKnown RBP11.11□□□□□ -0.63
ABCA4-201ENST00000370225 WRNQ14191 1432 aaPredicted RBP eCLIP11.11□□□□□ -0.63
ABCA4-201ENST00000370225 RGS3P49796 1198 aa11.11□□□□□ -0.63
ABCA4-201ENST00000370225 KIF27Q86VH2 1401 aa11.11□□□□□ -0.63
ABCA4-201ENST00000370225 ZNF330Q9Y3S2 320 aaPredicted RBP11.11□□□□□ -0.63
ABCA4-201ENST00000370225 FGD1P98174 961 aa11.11□□□□□ -0.63
ABCA4-201ENST00000370225 SUPT16HQ9Y5B9 1047 aaKnown RBP11.1□□□□□ -0.63
ABCA4-201ENST00000370225 CLSTN1O94985 981 aa11.09□□□□□ -0.63
ABCA4-201ENST00000370225 CCNB3Q8WWL7 1395 aa11.09□□□□□ -0.63
ABCA4-201ENST00000370225 KCNJ4P48050 445 aa11.09□□□□□ -0.63
ABCA4-201ENST00000370225 GOLGA6L22H0YM25 854 aa11.09□□□□□ -0.63
ABCA4-201ENST00000370225 PTMAP06454 111 aaKnown RBP11.08□□□□□ -0.64
ABCA4-201ENST00000370225 PLCB2Q00722 1185 aa11.08□□□□□ -0.64
ABCA4-201ENST00000370225 CCDC9Q9Y3X0 531 aaKnown RBP11.08□□□□□ -0.64
ABCA4-201ENST00000370225 KANK1Q14678 1352 aa11.08□□□□□ -0.64
ABCA4-201ENST00000370225 TRIM44Q96DX7 344 aaPredicted RBP11.08□□□□□ -0.64
ABCA4-201ENST00000370225 DDRGK1Q96HY6 314 aa11.07□□□□□ -0.64
ABCA4-201ENST00000370225 CSB-PGBD3P0DP91 1061 aa11.05□□□□□ -0.64
ABCA4-201ENST00000370225 MYO15BQ96JP2 1530 aa11.05□□□□□ -0.64
ABCA4-201ENST00000370225 APBB1O00213 710 aa11.04□□□□□ -0.64
ABCA4-201ENST00000370225 FOXD1Q16676 465 aa11.04□□□□□ -0.64
ABCA4-201ENST00000370225 NUTM2DQ5VT03 806 aaPredicted RBP11.04□□□□□ -0.64
ABCA4-201ENST00000370225 HDGFP51858 240 aaKnown RBP11.04□□□□□ -0.64
ABCA4-201ENST00000370225 DNTTIP2Q5QJE6 756 aaKnown RBP11.03□□□□□ -0.64
ABCA4-201ENST00000370225 TMF1P82094 1093 aa11.03□□□□□ -0.64
ABCA4-201ENST00000370225 AMER1Q5JTC6 1135 aaPredicted RBP11.03□□□□□ -0.64
ABCA4-201ENST00000370225 MORC1Q86VD1 984 aa11.03□□□□□ -0.64
ABCA4-201ENST00000370225 RTF1Q92541 710 aaKnown RBP11.02□□□□□ -0.65
ABCA4-201ENST00000370225 HSP90AB1P08238 724 aaKnown RBP11.01□□□□□ -0.65
ABCA4-201ENST00000370225 SPRYD3Q8NCJ5 442 aa11.01□□□□□ -0.65
ABCA4-201ENST00000370225 GLIPR1L2Q4G1C9 344 aa11.01□□□□□ -0.65
ABCA4-201ENST00000370225 PNNQ9H307 717 aaKnown RBP11□□□□□ -0.65
ABCA4-201ENST00000370225 CUX2O14529 1486 aa11□□□□□ -0.65
ABCA4-201ENST00000370225 CEP164Q9UPV0 1460 aa10.99□□□□□ -0.65
ABCA4-201ENST00000370225 NUTM2FA1L443 756 aa10.98□□□□□ -0.65
ABCA4-201ENST00000370225 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.97□□□□□ -0.65
ABCA4-201ENST00000370225 NACADO15069 1562 aa10.97□□□□□ -0.65
ABCA4-201ENST00000370225 EEA1Q15075 1411 aa10.97□□□□□ -0.65
ABCA4-201ENST00000370225 HDGFL2Q7Z4V5 671 aaPredicted RBP10.96□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms