RNA–Protein interactions for RNA: ENST00000361654.8

CLIP1-203, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 5,568 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-203ENST00000361654 LMOD2Q6P5Q4 547 aa14.54□□□□□ -0.08
CLIP1-203ENST00000361654 CFAP53Q96M91 514 aa14.54□□□□□ -0.08
CLIP1-203ENST00000361654 HNRNPUQ00839 825 aaKnown RBP eCLIP14.53□□□□□ -0.08
CLIP1-203ENST00000361654 CDCA8Q53HL2 280 aa14.53□□□□□ -0.08
CLIP1-203ENST00000361654 SENP3Q9H4L4 574 aaPredicted RBP14.51□□□□□ -0.09
CLIP1-203ENST00000361654 HDGFP51858 240 aaKnown RBP14.5□□□□□ -0.09
CLIP1-203ENST00000361654 RSF1Q96T23 1441 aaPredicted RBP14.5□□□□□ -0.09
CLIP1-203ENST00000361654 ERCC6Q03468 1493 aa14.49□□□□□ -0.09
CLIP1-203ENST00000361654 POGKQ9P215 609 aa14.46□□□□□ -0.09
CLIP1-203ENST00000361654 DDX10Q13206 875 aaKnown RBP14.45□□□□□ -0.1
CLIP1-203ENST00000361654 CFDP1Q9UEE9 299 aaPredicted RBP14.44□□□□□ -0.1
CLIP1-203ENST00000361654 MRS2Q9HD23 443 aa14.44□□□□□ -0.1
CLIP1-203ENST00000361654 CCDC136Q96JN2 1154 aa14.43□□□□□ -0.1
CLIP1-203ENST00000361654 PPM1GO15355 546 aaPredicted RBP14.42□□□□□ -0.1
CLIP1-203ENST00000361654 EIF5BO60841 1220 aaKnown RBP14.41□□□□□ -0.1
CLIP1-203ENST00000361654 EIF4G2P78344 907 aaKnown RBP eCLIP14.41□□□□□ -0.1
CLIP1-203ENST00000361654 NCLP19338 710 aaKnown RBP14.41□□□□□ -0.1
CLIP1-203ENST00000361654 RGL3Q3MIN7 710 aa14.41□□□□□ -0.1
CLIP1-203ENST00000361654 RRP7BPQ9NSQ0 103 aa14.4□□□□□ -0.1
CLIP1-203ENST00000361654 NUDCQ9Y266 331 aa14.4□□□□□ -0.1
CLIP1-203ENST00000361654 KNSTRNQ9Y448 316 aa14.38□□□□□ -0.11
CLIP1-203ENST00000361654 ZRSR1Q15695 479 aaKnown RBP14.38□□□□□ -0.11
CLIP1-203ENST00000361654 MAPK8IP3Q9UPT6 1336 aa14.37□□□□□ -0.11
CLIP1-203ENST00000361654 GOLGA2Q08379 1002 aa14.36□□□□□ -0.11
CLIP1-203ENST00000361654 FKBP8Q14318 412 aa14.36□□□□□ -0.11
CLIP1-203ENST00000361654 RB1CC1Q8TDY2 1594 aa14.36□□□□□ -0.11
CLIP1-203ENST00000361654 CASC1Q6TDU7 716 aa14.36□□□□□ -0.11
CLIP1-203ENST00000361654 CCDC180Q9P1Z9 1646 aa14.34□□□□□ -0.11
CLIP1-203ENST00000361654 KANK1Q14678 1352 aa14.32□□□□□ -0.12
CLIP1-203ENST00000361654 PNNQ9H307 717 aaKnown RBP14.32□□□□□ -0.12
CLIP1-203ENST00000361654 TULP1O00294 542 aaPredicted RBP14.31□□□□□ -0.12
CLIP1-203ENST00000361654 MLECQ14165 292 aa14.31□□□□□ -0.12
CLIP1-203ENST00000361654 CHMP4BQ9H444 224 aaKnown RBP14.31□□□□□ -0.12
CLIP1-203ENST00000361654 MIER1Q8N108 512 aa14.3□□□□□ -0.12
CLIP1-203ENST00000361654 CLIP1P30622 1438 aa14.3□□□□□ -0.12
CLIP1-203ENST00000361654 GOLGA6L22H0YM25 854 aa14.29□□□□□ -0.12
CLIP1-203ENST00000361654 ANP32EQ9BTT0 268 aa14.29□□□□□ -0.12
CLIP1-203ENST00000361654 BECN1Q14457 450 aa14.28□□□□□ -0.12
CLIP1-203ENST00000361654 FTSJ3Q8IY81 847 aaKnown RBP14.28□□□□□ -0.12
CLIP1-203ENST00000361654 OS9Q13438 667 aaPredicted RBP14.27□□□□□ -0.13
CLIP1-203ENST00000361654 TMX4Q9H1E5 349 aaPredicted RBP14.26□□□□□ -0.13
CLIP1-203ENST00000361654 LAS1LQ9Y4W2 734 aaKnown RBP14.26□□□□□ -0.13
CLIP1-203ENST00000361654 CARD11Q9BXL7 1154 aa14.26□□□□□ -0.13
CLIP1-203ENST00000361654 KIF27Q86VH2 1401 aa14.23□□□□□ -0.13
CLIP1-203ENST00000361654 BAZ1BQ9UIG0 1483 aaKnown RBP14.23□□□□□ -0.13
CLIP1-203ENST00000361654 FGD1P98174 961 aa14.22□□□□□ -0.13
CLIP1-203ENST00000361654 EEA1Q15075 1411 aa14.22□□□□□ -0.13
CLIP1-203ENST00000361654 MS4A1P11836 297 aa14.22□□□□□ -0.13
CLIP1-203ENST00000361654 ZCCHC6Q5VYS8 1495 aaKnown RBP14.22□□□□□ -0.13
CLIP1-203ENST00000361654 CCNB3Q8WWL7 1395 aa14.19□□□□□ -0.14
CLIP1-203ENST00000361654 NEUROD2Q15784 382 aa14.18□□□□□ -0.14
CLIP1-203ENST00000361654 U2SURPO15042 1029 aaKnown RBP14.18□□□□□ -0.14
CLIP1-203ENST00000361654 CSB-PGBD3P0DP91 1061 aa14.17□□□□□ -0.14
CLIP1-203ENST00000361654 KCNJ4P48050 445 aa14.17□□□□□ -0.14
CLIP1-203ENST00000361654 DDRGK1Q96HY6 314 aa14.17□□□□□ -0.14
CLIP1-203ENST00000361654 SRPK2P78362 688 aaKnown RBP14.17□□□□□ -0.14
CLIP1-203ENST00000361654 CCDC9Q9Y3X0 531 aaKnown RBP14.17□□□□□ -0.14
CLIP1-203ENST00000361654 ISY1Q9ULR0 285 aaKnown RBP14.16□□□□□ -0.14
CLIP1-203ENST00000361654 RTF1Q92541 710 aaKnown RBP14.15□□□□□ -0.15
CLIP1-203ENST00000361654 GOLGA3Q08378 1498 aa14.14□□□□□ -0.15
CLIP1-203ENST00000361654 GGT6Q6P531 493 aa14.14□□□□□ -0.15
CLIP1-203ENST00000361654 CHMP4AQ9BY43 222 aa14.14□□□□□ -0.15
CLIP1-203ENST00000361654 SOX12O15370 315 aa14.13□□□□□ -0.15
CLIP1-203ENST00000361654 TNNT2P45379 298 aaPredicted RBP14.12□□□□□ -0.15
CLIP1-203ENST00000361654 TMF1P82094 1093 aa14.12□□□□□ -0.15
CLIP1-203ENST00000361654 WRNQ14191 1432 aaPredicted RBP eCLIP14.12□□□□□ -0.159e-6■■■■■ 50.1
CLIP1-203ENST00000361654 CLSTN1O94985 981 aa14.12□□□□□ -0.15
CLIP1-203ENST00000361654 HDGFL2Q7Z4V5 671 aaPredicted RBP14.12□□□□□ -0.15
CLIP1-203ENST00000361654 NAP1L2Q9ULW6 460 aaPredicted RBP14.11□□□□□ -0.15
CLIP1-203ENST00000361654 GLIPR1L2Q4G1C9 344 aa14.11□□□□□ -0.15
CLIP1-203ENST00000361654 HIRIP3Q9BW71 556 aaPredicted RBP14.11□□□□□ -0.15
CLIP1-203ENST00000361654 PAK3O75914 559 aaPredicted RBP14.1□□□□□ -0.15
CLIP1-203ENST00000361654 TRIM44Q96DX7 344 aaPredicted RBP14.1□□□□□ -0.15
CLIP1-203ENST00000361654 EID1Q9Y6B2 187 aa14.1□□□□□ -0.15
CLIP1-203ENST00000361654 AEBP2Q6ZN18 517 aaPredicted RBP14.1□□□□□ -0.15
CLIP1-203ENST00000361654 TAOK2Q9UL54 1235 aa14.09□□□□□ -0.15
CLIP1-203ENST00000361654 CARMIL2Q6F5E8 1435 aa14.09□□□□□ -0.15
CLIP1-203ENST00000361654 GOLGA6L6A8MZA4 724 aa14.09□□□□□ -0.15
CLIP1-203ENST00000361654 PTMAP06454 111 aaKnown RBP14.09□□□□□ -0.15
CLIP1-203ENST00000361654 NRDCO43847 1150 aa14.08□□□□□ -0.16
CLIP1-203ENST00000361654 FRAT1Q92837 279 aaPredicted RBP14.06□□□□□ -0.16
CLIP1-203ENST00000361654 NACADO15069 1562 aa14.06□□□□□ -0.16
CLIP1-203ENST00000361654 EFCAB2Q5VUJ9 269 aa14.05□□□□□ -0.16
CLIP1-203ENST00000361654 MORC1Q86VD1 984 aa14.05□□□□□ -0.16
CLIP1-203ENST00000361654 G3V3G9 751 aa14.05□□□□□ -0.16
CLIP1-203ENST00000361654 DCAF8Q5TAQ9 597 aa14.05□□□□□ -0.16
CLIP1-203ENST00000361654 SUPT16HQ9Y5B9 1047 aaKnown RBP14.05□□□□□ -0.16
CLIP1-203ENST00000361654 ZNF330Q9Y3S2 320 aaPredicted RBP14.04□□□□□ -0.16
CLIP1-203ENST00000361654 FHAD1B1AJZ9 1412 aa14.04□□□□□ -0.16
CLIP1-203ENST00000361654 SAFB2Q14151 953 aaKnown RBP eCLIP14.04□□□□□ -0.16
CLIP1-203ENST00000361654 NBR1Q14596 966 aa14.04□□□□□ -0.16
CLIP1-203ENST00000361654 CFAP44Q96MT7 982 aa14.04□□□□□ -0.16
CLIP1-203ENST00000361654 NCBP3Q53F19 620 aaKnown RBP14.03□□□□□ -0.16
CLIP1-203ENST00000361654 DCAF11Q8TEB1 546 aa14.03□□□□□ -0.16
CLIP1-203ENST00000361654 STK26Q9P289 416 aa14.03□□□□□ -0.16
CLIP1-203ENST00000361654 EIF4G1Q04637 1599 aaKnown RBP14.03□□□□□ -0.16
CLIP1-203ENST00000361654 GOLGA6L4A6NEF3 574 aa14.02□□□□□ -0.16
CLIP1-203ENST00000361654 CALD1Q05682 793 aaKnown RBP14.02□□□□□ -0.16
CLIP1-203ENST00000361654 MCCP23508 829 aa14.02□□□□□ -0.17
CLIP1-203ENST00000361654 CC2D1BQ5T0F9 858 aaKnown RBP14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms