RNA–Protein interactions for RNA: ENST00000360264.7

CUX1-203, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CUX1, Length 13,762 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-203ENST00000360264 MTUS2Q5JR59 1369 aa12.69□□□□□ -0.38
CUX1-203ENST00000360264 CFAP53Q96M91 514 aa12.68□□□□□ -0.38
CUX1-203ENST00000360264 HAP1P54257 671 aaPredicted RBP12.67□□□□□ -0.38
CUX1-203ENST00000360264 TRIM44Q96DX7 344 aaPredicted RBP12.67□□□□□ -0.38
CUX1-203ENST00000360264 SCRIBQ14160 1630 aa12.67□□□□□ -0.38
CUX1-203ENST00000360264 NRDCO43847 1150 aa12.66□□□□□ -0.38
CUX1-203ENST00000360264 RSF1Q96T23 1441 aaPredicted RBP12.66□□□□□ -0.38
CUX1-203ENST00000360264 GOLGA6L6A8MZA4 724 aa12.65□□□□□ -0.38
CUX1-203ENST00000360264 DDX10Q13206 875 aaKnown RBP12.64□□□□□ -0.39
CUX1-203ENST00000360264 NPHP1O15259 732 aa12.64□□□□□ -0.39
CUX1-203ENST00000360264 DCAF1Q9Y4B6 1507 aa12.61□□□□□ -0.39
CUX1-203ENST00000360264 PTMAP06454 111 aaKnown RBP12.6□□□□□ -0.39
CUX1-203ENST00000360264 CHIC2Q9UKJ5 165 aa12.6□□□□□ -0.39
CUX1-203ENST00000360264 EIF4G2P78344 907 aaKnown RBP eCLIP12.6□□□□□ -0.391e-6■■■■■ 32.2
CUX1-203ENST00000360264 PNNQ9H307 717 aaKnown RBP12.59□□□□□ -0.39
CUX1-203ENST00000360264 SALL2Q9Y467 1007 aaPredicted RBP12.59□□□□□ -0.39
CUX1-203ENST00000360264 NBR1Q14596 966 aa12.59□□□□□ -0.39
CUX1-203ENST00000360264 KDM2AQ9Y2K7 1162 aa12.59□□□□□ -0.39
CUX1-203ENST00000360264 MS4A1P11836 297 aa12.59□□□□□ -0.39
CUX1-203ENST00000360264 FTSJ3Q8IY81 847 aaKnown RBP12.59□□□□□ -0.39
CUX1-203ENST00000360264 NUDCQ9Y266 331 aa12.58□□□□□ -0.39
CUX1-203ENST00000360264 PLEKHD1A6NEE1 506 aa12.58□□□□□ -0.4
CUX1-203ENST00000360264 KNSTRNQ9Y448 316 aa12.57□□□□□ -0.4
CUX1-203ENST00000360264 ARID4BQ4LE39 1312 aaPredicted RBP12.57□□□□□ -0.4
CUX1-203ENST00000360264 ZBTB7CA1YPR0 619 aa12.54□□□□□ -0.4
CUX1-203ENST00000360264 CCDC180Q9P1Z9 1646 aa12.54□□□□□ -0.4
CUX1-203ENST00000360264 GOLGA2Q08379 1002 aa12.53□□□□□ -0.4
CUX1-203ENST00000360264 EEA1Q15075 1411 aa12.53□□□□□ -0.4
CUX1-203ENST00000360264 L1TD1Q5T7N2 865 aaKnown RBP12.53□□□□□ -0.4
CUX1-203ENST00000360264 ARXQ96QS3 562 aa12.53□□□□□ -0.4
CUX1-203ENST00000360264 CFAP44Q96MT7 982 aa12.52□□□□□ -0.4
CUX1-203ENST00000360264 KAT6BQ8WYB5 2073 aa12.52□□□□□ -0.41
CUX1-203ENST00000360264 MAPK8IP3Q9UPT6 1336 aa12.52□□□□□ -0.41
CUX1-203ENST00000360264 HDGFP51858 240 aaKnown RBP12.51□□□□□ -0.41
CUX1-203ENST00000360264 CHAF1AQ13111 956 aaPredicted RBP12.49□□□□□ -0.41
CUX1-203ENST00000360264 FGD1P98174 961 aa12.49□□□□□ -0.41
CUX1-203ENST00000360264 CLIP1P30622 1438 aa12.49□□□□□ -0.41
CUX1-203ENST00000360264 DNTTIP2Q5QJE6 756 aaKnown RBP12.49□□□□□ -0.41
CUX1-203ENST00000360264 PPM1GO15355 546 aaPredicted RBP12.47□□□□□ -0.41
CUX1-203ENST00000360264 OS9Q13438 667 aaPredicted RBP12.46□□□□□ -0.41
CUX1-203ENST00000360264 MCCP23508 829 aa12.45□□□□□ -0.42
CUX1-203ENST00000360264 RRP7BPQ9NSQ0 103 aa12.45□□□□□ -0.42
CUX1-203ENST00000360264 KANK1Q14678 1352 aa12.45□□□□□ -0.42
CUX1-203ENST00000360264 RB1CC1Q8TDY2 1594 aa12.45□□□□□ -0.42
CUX1-203ENST00000360264 ERICH6BQ5W0A0 696 aa12.44□□□□□ -0.42
CUX1-203ENST00000360264 GOLGA3Q08378 1498 aa12.43□□□□□ -0.42
CUX1-203ENST00000360264 KCNH8Q96L42 1107 aa12.43□□□□□ -0.42
CUX1-203ENST00000360264 POGKQ9P215 609 aa12.43□□□□□ -0.42
CUX1-203ENST00000360264 KCNJ4P48050 445 aa12.43□□□□□ -0.42
CUX1-203ENST00000360264 TULP1O00294 542 aaPredicted RBP12.42□□□□□ -0.42
CUX1-203ENST00000360264 CHMP4AQ9BY43 222 aa12.42□□□□□ -0.42
CUX1-203ENST00000360264 CFDP1Q9UEE9 299 aaPredicted RBP12.4□□□□□ -0.42
CUX1-203ENST00000360264 CARD11Q9BXL7 1154 aa12.4□□□□□ -0.42
CUX1-203ENST00000360264 KIF27Q86VH2 1401 aa12.39□□□□□ -0.43
CUX1-203ENST00000360264 KIAA2012Q0VF49 1180 aa12.39□□□□□ -0.43
CUX1-203ENST00000360264 GOLGA6L4A6NEF3 574 aa12.39□□□□□ -0.43
CUX1-203ENST00000360264 PLEKHG5O94827 1062 aa12.39□□□□□ -0.43
CUX1-203ENST00000360264 RGL3Q3MIN7 710 aa12.38□□□□□ -0.43
CUX1-203ENST00000360264 LMOD2Q6P5Q4 547 aa12.37□□□□□ -0.43
CUX1-203ENST00000360264 HSCBQ8IWL3 235 aa12.37□□□□□ -0.43
CUX1-203ENST00000360264 TMX4Q9H1E5 349 aaPredicted RBP12.37□□□□□ -0.43
CUX1-203ENST00000360264 ZCCHC6Q5VYS8 1495 aaKnown RBP12.36□□□□□ -0.43
CUX1-203ENST00000360264 HSP90AB1P08238 724 aaKnown RBP12.36□□□□□ -0.43
CUX1-203ENST00000360264 KIAA1211Q6ZU35 1233 aa12.34□□□□□ -0.43
CUX1-203ENST00000360264 TMF1P82094 1093 aa12.34□□□□□ -0.43
CUX1-203ENST00000360264 CCDC34Q96HJ3 373 aa12.34□□□□□ -0.43
CUX1-203ENST00000360264 CALD1Q05682 793 aaKnown RBP12.34□□□□□ -0.43
CUX1-203ENST00000360264 FHAD1B1AJZ9 1412 aa12.33□□□□□ -0.44
CUX1-203ENST00000360264 ERCC6Q03468 1493 aa12.33□□□□□ -0.44
CUX1-203ENST00000360264 PTMSP20962 102 aa12.33□□□□□ -0.44
CUX1-203ENST00000360264 NAP1L2Q9ULW6 460 aaPredicted RBP12.32□□□□□ -0.44
CUX1-203ENST00000360264 IPO8O15397 1037 aaKnown RBP12.32□□□□□ -0.44
CUX1-203ENST00000360264 GPATCH3Q96I76 525 aa12.31□□□□□ -0.44
CUX1-203ENST00000360264 LAS1LQ9Y4W2 734 aaKnown RBP12.31□□□□□ -0.44
CUX1-203ENST00000360264 USP35Q9P2H5 1018 aa12.31□□□□□ -0.44
CUX1-203ENST00000360264 NAP1L5Q96NT1 182 aaPredicted RBP12.31□□□□□ -0.44
CUX1-203ENST00000360264 CLSTN1O94985 981 aa12.31□□□□□ -0.44
CUX1-203ENST00000360264 RTF1Q92541 710 aaKnown RBP12.3□□□□□ -0.44
CUX1-203ENST00000360264 HTATSF1O43719 755 aaKnown RBP12.3□□□□□ -0.44
CUX1-203ENST00000360264 HDAC5Q9UQL6 1122 aa12.3□□□□□ -0.44
CUX1-203ENST00000360264 BAZ1BQ9UIG0 1483 aaKnown RBP12.3□□□□□ -0.44
CUX1-203ENST00000360264 GNL2Q13823 731 aaKnown RBP12.3□□□□□ -0.44
CUX1-203ENST00000360264 PLCB2Q00722 1185 aa12.29□□□□□ -0.44
CUX1-203ENST00000360264 MSNP26038 577 aaKnown RBP12.29□□□□□ -0.44
CUX1-203ENST00000360264 PPP4R2Q9NY27 417 aa12.29□□□□□ -0.44
CUX1-203ENST00000360264 CCNB3Q8WWL7 1395 aa12.29□□□□□ -0.44
CUX1-203ENST00000360264 CEP164Q9UPV0 1460 aa12.29□□□□□ -0.44
CUX1-203ENST00000360264 FRAT1Q92837 279 aaPredicted RBP12.28□□□□□ -0.44
CUX1-203ENST00000360264 IRX6P78412 446 aaPredicted RBP12.27□□□□□ -0.44
CUX1-203ENST00000360264 MIER1Q8N108 512 aa12.27□□□□□ -0.44
CUX1-203ENST00000360264 TIMELESSQ9UNS1 1208 aa12.27□□□□□ -0.45
CUX1-203ENST00000360264 SENP3Q9H4L4 574 aaPredicted RBP12.26□□□□□ -0.45
CUX1-203ENST00000360264 TPRNQ4KMQ1 711 aa12.26□□□□□ -0.45
CUX1-203ENST00000360264 TPM4P67936 248 aa12.25□□□□□ -0.45
CUX1-203ENST00000360264 NACADO15069 1562 aa12.25□□□□□ -0.45
CUX1-203ENST00000360264 ISY1Q9ULR0 285 aaKnown RBP12.25□□□□□ -0.45
CUX1-203ENST00000360264 U2SURPO15042 1029 aaKnown RBP12.25□□□□□ -0.45
CUX1-203ENST00000360264 NOC3LQ8WTT2 800 aaKnown RBP12.25□□□□□ -0.45
CUX1-203ENST00000360264 EIF3AQ14152 1382 aaKnown RBP12.24□□□□□ -0.45
CUX1-203ENST00000360264 HDGFL2Q7Z4V5 671 aaPredicted RBP12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms