RNA–Protein interactions for RNA: ENST00000356435.9

PTPRD-202, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

APPRIS P1 TSL 5 BASIC

Gene PTPRD, Length 9,472 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-202ENST00000356435 NCLP19338 710 aaKnown RBP7.31□□□□□ -1.24
PTPRD-202ENST00000356435 MTUS2Q5JR59 1369 aa7.31□□□□□ -1.24
PTPRD-202ENST00000356435 TMC1Q8TDI8 760 aa7.31□□□□□ -1.24
PTPRD-202ENST00000356435 PLEKHG5O94827 1062 aa7.31□□□□□ -1.24
PTPRD-202ENST00000356435 FAM9BQ8IZU0 186 aa7.31□□□□□ -1.24
PTPRD-202ENST00000356435 HNRNPUQ00839 825 aaKnown RBP eCLIP7.3□□□□□ -1.24
PTPRD-202ENST00000356435 CHIC2Q9UKJ5 165 aa7.3□□□□□ -1.24
PTPRD-202ENST00000356435 ZRSR1Q15695 479 aaKnown RBP7.3□□□□□ -1.24
PTPRD-202ENST00000356435 GLIPR1L2Q4G1C9 344 aa7.3□□□□□ -1.24
PTPRD-202ENST00000356435 CASC1Q6TDU7 716 aa7.3□□□□□ -1.24
PTPRD-202ENST00000356435 SUPT16HQ9Y5B9 1047 aaKnown RBP7.3□□□□□ -1.24
PTPRD-202ENST00000356435 EIF5BO60841 1220 aaKnown RBP7.29□□□□□ -1.24
PTPRD-202ENST00000356435 CFAP53Q96M91 514 aa7.29□□□□□ -1.24
PTPRD-202ENST00000356435 ARXQ96QS3 562 aa7.29□□□□□ -1.24
PTPRD-202ENST00000356435 CCDC136Q96JN2 1154 aa7.28□□□□□ -1.24
PTPRD-202ENST00000356435 KDM2AQ9Y2K7 1162 aa7.28□□□□□ -1.24
PTPRD-202ENST00000356435 TIMELESSQ9UNS1 1208 aa7.27□□□□□ -1.25
PTPRD-202ENST00000356435 CEP164Q9UPV0 1460 aa7.26□□□□□ -1.25
PTPRD-202ENST00000356435 CDCA8Q53HL2 280 aa7.26□□□□□ -1.25
PTPRD-202ENST00000356435 SALL2Q9Y467 1007 aaPredicted RBP7.26□□□□□ -1.25
PTPRD-202ENST00000356435 GOLGA6L22H0YM25 854 aa7.26□□□□□ -1.25
PTPRD-202ENST00000356435 BECN1Q14457 450 aa7.26□□□□□ -1.25
PTPRD-202ENST00000356435 FKBP8Q14318 412 aa7.25□□□□□ -1.25
PTPRD-202ENST00000356435 ERICH6BQ5W0A0 696 aa7.25□□□□□ -1.25
PTPRD-202ENST00000356435 KCNH8Q96L42 1107 aa7.25□□□□□ -1.25
PTPRD-202ENST00000356435 MRS2Q9HD23 443 aa7.25□□□□□ -1.25
PTPRD-202ENST00000356435 PLEKHD1A6NEE1 506 aa7.25□□□□□ -1.25
PTPRD-202ENST00000356435 CLIP1P30622 1438 aa7.25□□□□□ -1.25
PTPRD-202ENST00000356435 VPS8Q8N3P4 1428 aa7.24□□□□□ -1.25
PTPRD-202ENST00000356435 TSHZ2Q9NRE2 1034 aa7.24□□□□□ -1.25
PTPRD-202ENST00000356435 ERCC6Q03468 1493 aa7.24□□□□□ -1.25
PTPRD-202ENST00000356435 BAZ1AQ9NRL2 1556 aaPredicted RBP7.24□□□□□ -1.25
PTPRD-202ENST00000356435 TULP1O00294 542 aaPredicted RBP7.24□□□□□ -1.25
PTPRD-202ENST00000356435 SENP3Q9H4L4 574 aaPredicted RBP7.24□□□□□ -1.25
PTPRD-202ENST00000356435 NACADO15069 1562 aa7.23□□□□□ -1.25
PTPRD-202ENST00000356435 EIF4G2P78344 907 aaKnown RBP eCLIP7.23□□□□□ -1.25
PTPRD-202ENST00000356435 LMOD2Q6P5Q4 547 aa7.23□□□□□ -1.25
PTPRD-202ENST00000356435 MAPK8IP3Q9UPT6 1336 aa7.23□□□□□ -1.25
PTPRD-202ENST00000356435 GOLGA2Q08379 1002 aa7.23□□□□□ -1.25
PTPRD-202ENST00000356435 GOLGA6L6A8MZA4 724 aa7.22□□□□□ -1.25
PTPRD-202ENST00000356435 DDRGK1Q96HY6 314 aa7.22□□□□□ -1.25
PTPRD-202ENST00000356435 KNSTRNQ9Y448 316 aa7.21□□□□□ -1.26
PTPRD-202ENST00000356435 DDX10Q13206 875 aaKnown RBP7.21□□□□□ -1.26
PTPRD-202ENST00000356435 FTSJ3Q8IY81 847 aaKnown RBP7.21□□□□□ -1.26
PTPRD-202ENST00000356435 POGKQ9P215 609 aa7.21□□□□□ -1.26
PTPRD-202ENST00000356435 CHMP4BQ9H444 224 aaKnown RBP7.21□□□□□ -1.26
PTPRD-202ENST00000356435 BAZ1BQ9UIG0 1483 aaKnown RBP7.2□□□□□ -1.26
PTPRD-202ENST00000356435 CCER2I3L3R5 266 aa7.2□□□□□ -1.26
PTPRD-202ENST00000356435 CLSTN1O94985 981 aa7.2□□□□□ -1.26
PTPRD-202ENST00000356435 NUDCQ9Y266 331 aa7.2□□□□□ -1.26
PTPRD-202ENST00000356435 PPM1GO15355 546 aaPredicted RBP7.2□□□□□ -1.26
PTPRD-202ENST00000356435 OS9Q13438 667 aaPredicted RBP7.2□□□□□ -1.26
PTPRD-202ENST00000356435 KANK1Q14678 1352 aa7.19□□□□□ -1.26
PTPRD-202ENST00000356435 HDGFP51858 240 aaKnown RBP7.19□□□□□ -1.26
PTPRD-202ENST00000356435 PTMAP06454 111 aaKnown RBP7.18□□□□□ -1.26
PTPRD-202ENST00000356435 TRIM44Q96DX7 344 aaPredicted RBP7.17□□□□□ -1.26
PTPRD-202ENST00000356435 RRP7BPQ9NSQ0 103 aa7.17□□□□□ -1.26
PTPRD-202ENST00000356435 TRHP20396 242 aaPredicted RBP7.17□□□□□ -1.26
PTPRD-202ENST00000356435 FANCIQ9NVI1 1328 aa7.17□□□□□ -1.26
PTPRD-202ENST00000356435 PRKCSHP14314 528 aaPredicted RBP7.17□□□□□ -1.26
PTPRD-202ENST00000356435 CFDP1Q9UEE9 299 aaPredicted RBP7.17□□□□□ -1.26
PTPRD-202ENST00000356435 FGD1P98174 961 aa7.17□□□□□ -1.26
PTPRD-202ENST00000356435 PNNQ9H307 717 aaKnown RBP7.17□□□□□ -1.26
PTPRD-202ENST00000356435 MROH2BQ7Z745 1585 aa7.16□□□□□ -1.26
PTPRD-202ENST00000356435 TOP2AP11388 1531 aaKnown RBP7.15□□□□□ -1.26
PTPRD-202ENST00000356435 NBR1Q14596 966 aa7.15□□□□□ -1.26
PTPRD-202ENST00000356435 TMX4Q9H1E5 349 aaPredicted RBP7.15□□□□□ -1.26
PTPRD-202ENST00000356435 NRDCO43847 1150 aa7.15□□□□□ -1.26
PTPRD-202ENST00000356435 LAS1LQ9Y4W2 734 aaKnown RBP7.15□□□□□ -1.26
PTPRD-202ENST00000356435 MS4A1P11836 297 aa7.15□□□□□ -1.27
PTPRD-202ENST00000356435 CECR2Q9BXF3 1484 aa7.14□□□□□ -1.27
PTPRD-202ENST00000356435 DHX57Q6P158 1386 aaKnown RBP7.14□□□□□ -1.27
PTPRD-202ENST00000356435 RGL3Q3MIN7 710 aa7.14□□□□□ -1.27
PTPRD-202ENST00000356435 ISY1Q9ULR0 285 aaKnown RBP7.14□□□□□ -1.27
PTPRD-202ENST00000356435 KCNJ4P48050 445 aa7.13□□□□□ -1.27
PTPRD-202ENST00000356435 RBM19Q9Y4C8 960 aaKnown RBP7.13□□□□□ -1.27
PTPRD-202ENST00000356435 CCDC88BA6NC98 1476 aa7.13□□□□□ -1.27
PTPRD-202ENST00000356435 CARD11Q9BXL7 1154 aa7.13□□□□□ -1.27
PTPRD-202ENST00000356435 TNNT2P45379 298 aaPredicted RBP7.12□□□□□ -1.27
PTPRD-202ENST00000356435 NAP1L2Q9ULW6 460 aaPredicted RBP7.12□□□□□ -1.27
PTPRD-202ENST00000356435 TAOK2Q9UL54 1235 aa7.12□□□□□ -1.27
PTPRD-202ENST00000356435 CCNB3Q8WWL7 1395 aa7.11□□□□□ -1.27
PTPRD-202ENST00000356435 SOGA1O94964 1423 aa7.11□□□□□ -1.27
PTPRD-202ENST00000356435 TPRNQ4KMQ1 711 aa7.11□□□□□ -1.27
PTPRD-202ENST00000356435 L1TD1Q5T7N2 865 aaKnown RBP7.11□□□□□ -1.27
PTPRD-202ENST00000356435 KIF27Q86VH2 1401 aa7.11□□□□□ -1.27
PTPRD-202ENST00000356435 NCBP3Q53F19 620 aaKnown RBP7.11□□□□□ -1.27
PTPRD-202ENST00000356435 DNTTIP2Q5QJE6 756 aaKnown RBP7.1□□□□□ -1.27
PTPRD-202ENST00000356435 MCCP23508 829 aa7.1□□□□□ -1.27
PTPRD-202ENST00000356435 EIF4G1Q04637 1599 aaKnown RBP7.09□□□□□ -1.27
PTPRD-202ENST00000356435 GNL2Q13823 731 aaKnown RBP7.09□□□□□ -1.27
PTPRD-202ENST00000356435 GOLGA6L4A6NEF3 574 aa7.09□□□□□ -1.27
PTPRD-202ENST00000356435 NEUROD2Q15784 382 aa7.09□□□□□ -1.27
PTPRD-202ENST00000356435 KIF21BO75037 1637 aa7.08□□□□□ -1.28
PTPRD-202ENST00000356435 U2SURPO15042 1029 aaKnown RBP7.08□□□□□ -1.28
PTPRD-202ENST00000356435 KIAA2012Q0VF49 1180 aa7.08□□□□□ -1.28
PTPRD-202ENST00000356435 CUX2O14529 1486 aa7.08□□□□□ -1.28
PTPRD-202ENST00000356435 CHAF1AQ13111 956 aaPredicted RBP7.08□□□□□ -1.28
PTPRD-202ENST00000356435 MLECQ14165 292 aa7.08□□□□□ -1.28
PTPRD-202ENST00000356435 CSB-PGBD3P0DP91 1061 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms