RNA–Protein interactions for RNA: ENST00000354071.7

BRCA1-202, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best) BASIC

Gene BRCA1, Length 4,497 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-202ENST00000354071 TAOK2Q9UL54 1235 aa3.59□□□□□ -1.83
BRCA1-202ENST00000354071 FBXO3Q9UK99 471 aa3.59□□□□□ -1.84
BRCA1-202ENST00000354071 ZNF579Q8NAF0 562 aaKnown RBP3.58□□□□□ -1.84
BRCA1-202ENST00000354071 NKX1-1Q15270 411 aaPredicted RBP3.58□□□□□ -1.84
BRCA1-202ENST00000354071 RGL2O15211 777 aa3.58□□□□□ -1.84
BRCA1-202ENST00000354071 KIF12Q96FN5 646 aa3.58□□□□□ -1.84
BRCA1-202ENST00000354071 PRR29P0C7W0 189 aa3.57□□□□□ -1.84
BRCA1-202ENST00000354071 POTEJP0CG39 1038 aa3.57□□□□□ -1.84
BRCA1-202ENST00000354071 TPRNQ4KMQ1 711 aa3.57□□□□□ -1.84
BRCA1-202ENST00000354071 PELP1Q8IZL8 1130 aaKnown RBP3.56□□□□□ -1.84
BRCA1-202ENST00000354071 SGIP1Q9BQI5 828 aa3.56□□□□□ -1.84
BRCA1-202ENST00000354071 CLEC11AQ9Y240 323 aa3.54□□□□□ -1.84
BRCA1-202ENST00000354071 SP7Q8TDD2 431 aaPredicted RBP3.54□□□□□ -1.84
BRCA1-202ENST00000354071 BCANQ96GW7 911 aa3.54□□□□□ -1.84
BRCA1-202ENST00000354071 POTEB2H3BUK9 544 aa3.54□□□□□ -1.84
BRCA1-202ENST00000354071 ASTLQ6HA08 431 aaPredicted RBP3.54□□□□□ -1.84
BRCA1-202ENST00000354071 IFNL1Q8IU54 200 aa3.54□□□□□ -1.84
BRCA1-202ENST00000354071 GALR2O43603 387 aaPredicted RBP3.53□□□□□ -1.84
BRCA1-202ENST00000354071 CLCN6P51797 869 aa3.52□□□□□ -1.85
BRCA1-202ENST00000354071 MS4A4AQ96JQ5 239 aa3.52□□□□□ -1.85
BRCA1-202ENST00000354071 SPOCK2Q92563 424 aa3.52□□□□□ -1.85
BRCA1-202ENST00000354071 MAP3K13O43283 966 aa3.52□□□□□ -1.85
BRCA1-202ENST00000354071 FBXO22Q8NEZ5 403 aa3.52□□□□□ -1.85
BRCA1-202ENST00000354071 CFAP44Q96MT7 982 aa3.52□□□□□ -1.85
BRCA1-202ENST00000354071 PHF12Q96QT6 1004 aa3.52□□□□□ -1.85
BRCA1-202ENST00000354071 PAXIP1Q6ZW49 1069 aaPredicted RBP3.52□□□□□ -1.85
BRCA1-202ENST00000354071 TSHZ2Q9NRE2 1034 aa3.51□□□□□ -1.85
BRCA1-202ENST00000354071 GABBR2O75899 941 aa3.5□□□□□ -1.85
BRCA1-202ENST00000354071 PDCD7Q8N8D1 485 aaKnown RBP3.5□□□□□ -1.85
BRCA1-202ENST00000354071 MS4A3Q96HJ5 214 aa3.49□□□□□ -1.85
BRCA1-202ENST00000354071 VSIG10Q8N0Z9 540 aa3.49□□□□□ -1.85
BRCA1-202ENST00000354071 CD44P16070 742 aaKnown RBP3.49□□□□□ -1.85
BRCA1-202ENST00000354071 MIER1Q8N108 512 aa3.49□□□□□ -1.85
BRCA1-202ENST00000354071 BMP2KQ9NSY1 1161 aaPredicted RBP3.49□□□□□ -1.85
BRCA1-202ENST00000354071 MFRPQ9BY79 579 aa3.48□□□□□ -1.85
BRCA1-202ENST00000354071 ATMINO43313 823 aaPredicted RBP3.47□□□□□ -1.85
BRCA1-202ENST00000354071 ECM2O94769 699 aaPredicted RBP3.47□□□□□ -1.85
BRCA1-202ENST00000354071 PYGBP11216 843 aa3.47□□□□□ -1.85
BRCA1-202ENST00000354071 IRX5P78411 483 aaPredicted RBP3.47□□□□□ -1.85
BRCA1-202ENST00000354071 TIMELESSQ9UNS1 1208 aa3.47□□□□□ -1.85
BRCA1-202ENST00000354071 TMEM121BQ9BXQ6 578 aaPredicted RBP3.47□□□□□ -1.85
BRCA1-202ENST00000354071 TTLL13PA6NNM8 815 aa3.46□□□□□ -1.85
BRCA1-202ENST00000354071 HS6ST3Q8IZP7 471 aa3.46□□□□□ -1.85
BRCA1-202ENST00000354071 GTPBP6O43824 516 aaPredicted RBP3.46□□□□□ -1.86
BRCA1-202ENST00000354071 ATN1P54259 1190 aaPredicted RBP3.46□□□□□ -1.86
BRCA1-202ENST00000354071 PCDHB8Q9UN66 801 aa3.45□□□□□ -1.86
BRCA1-202ENST00000354071 PCDHB13Q9Y5F0 798 aa3.45□□□□□ -1.86
BRCA1-202ENST00000354071 LCE2DQ5TA82 110 aaPredicted RBP3.45□□□□□ -1.86
BRCA1-202ENST00000354071 KLHL34Q8N239 644 aa3.45□□□□□ -1.86
BRCA1-202ENST00000354071 BBXQ8WY36 941 aaPredicted RBP3.44□□□□□ -1.86
BRCA1-202ENST00000354071 COLQQ9Y215 455 aaPredicted RBP3.44□□□□□ -1.86
BRCA1-202ENST00000354071 KIF3CO14782 793 aa3.44□□□□□ -1.86
BRCA1-202ENST00000354071 TULP1O00294 542 aaPredicted RBP3.43□□□□□ -1.86
BRCA1-202ENST00000354071 PPP1R37O75864 691 aa3.43□□□□□ -1.86
BRCA1-202ENST00000354071 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP3.43□□□□□ -1.86
BRCA1-202ENST00000354071 RIOK3O14730 519 aaKnown RBP3.43□□□□□ -1.86
BRCA1-202ENST00000354071 ZFP91Q96JP5 570 aaPredicted RBP3.43□□□□□ -1.86
BRCA1-202ENST00000354071 CHGAP10645 457 aaKnown RBP3.43□□□□□ -1.86
BRCA1-202ENST00000354071 TMEM92Q6UXU6 159 aa3.43□□□□□ -1.86
BRCA1-202ENST00000354071 PLCD3Q8N3E9 789 aa3.43□□□□□ -1.86
BRCA1-202ENST00000354071 ZBTB4Q9P1Z0 1013 aaPredicted RBP3.42□□□□□ -1.86
BRCA1-202ENST00000354071 KDM4FA0A1W2PPD8 638 aa3.42□□□□□ -1.86
BRCA1-202ENST00000354071 CADPS2Q86UW7 1296 aa3.42□□□□□ -1.86
BRCA1-202ENST00000354071 ZRANB1Q9UGI0 708 aa3.42□□□□□ -1.86
BRCA1-202ENST00000354071 GSE1Q14687 1217 aa3.42□□□□□ -1.86
BRCA1-202ENST00000354071 TIE1P35590 1138 aa3.41□□□□□ -1.86
BRCA1-202ENST00000354071 TSPYL2Q9H2G4 693 aaPredicted RBP3.41□□□□□ -1.86
BRCA1-202ENST00000354071 ZBTB47Q9UFB7 747 aaPredicted RBP3.41□□□□□ -1.86
BRCA1-202ENST00000354071 SPRYD3Q8NCJ5 442 aa3.4□□□□□ -1.86
BRCA1-202ENST00000354071 NCKAP5LQ9HCH0 1330 aa3.4□□□□□ -1.86
BRCA1-202ENST00000354071 FAM212AQ96EL1 285 aa3.4□□□□□ -1.86
BRCA1-202ENST00000354071 TRIM41Q8WV44 630 aa3.39□□□□□ -1.87
BRCA1-202ENST00000354071 DPY19L2Q6NUT2 758 aa3.39□□□□□ -1.87
BRCA1-202ENST00000354071 CIZ1Q9ULV3 898 aaPredicted RBP3.39□□□□□ -1.87
BRCA1-202ENST00000354071 OTUD5Q96G74 571 aa3.38□□□□□ -1.87
BRCA1-202ENST00000354071 EFCAB3Q8N7B9 438 aa3.37□□□□□ -1.87
BRCA1-202ENST00000354071 HAX1O00165 279 aa3.37□□□□□ -1.87
BRCA1-202ENST00000354071 VGFO15240 615 aaPredicted RBP3.36□□□□□ -1.87
BRCA1-202ENST00000354071 PSEN1P49768 467 aa3.36□□□□□ -1.87
BRCA1-202ENST00000354071 TRIM35Q9UPQ4 493 aa3.36□□□□□ -1.87
BRCA1-202ENST00000354071 PDAP1Q13442 181 aaKnown RBP3.35□□□□□ -1.87
BRCA1-202ENST00000354071 IER5LQ5T953 404 aa3.35□□□□□ -1.87
BRCA1-202ENST00000354071 BCL11BQ9C0K0 894 aaPredicted RBP3.35□□□□□ -1.87
BRCA1-202ENST00000354071 NBR1Q14596 966 aa3.35□□□□□ -1.87
BRCA1-202ENST00000354071 CRISPLD2Q9H0B8 497 aa3.35□□□□□ -1.87
BRCA1-202ENST00000354071 ZNF467Q7Z7K2 595 aaPredicted RBP3.34□□□□□ -1.87
BRCA1-202ENST00000354071 PHF8Q9UPP1 1060 aa3.34□□□□□ -1.87
BRCA1-202ENST00000354071 GTF3C3Q9Y5Q9 886 aa3.34□□□□□ -1.87
BRCA1-202ENST00000354071 DCAF8Q5TAQ9 597 aa3.34□□□□□ -1.87
BRCA1-202ENST00000354071 MFSD10Q14728 455 aa3.34□□□□□ -1.87
BRCA1-202ENST00000354071 CAMK2BQ13554 666 aa3.33□□□□□ -1.88
BRCA1-202ENST00000354071 TMEM106CQ9BVX2 250 aa3.33□□□□□ -1.88
BRCA1-202ENST00000354071 HOXB3P14651 431 aaPredicted RBP3.32□□□□□ -1.88
BRCA1-202ENST00000354071 SOX12O15370 315 aa3.31□□□□□ -1.88
BRCA1-202ENST00000354071 ARIH1Q9Y4X5 557 aaPredicted RBP3.31□□□□□ -1.88
BRCA1-202ENST00000354071 MICALL2Q8IY33 904 aa3.3□□□□□ -1.88
BRCA1-202ENST00000354071 CABP2Q9NPB3 220 aa3.3□□□□□ -1.88
BRCA1-202ENST00000354071 METRNQ9UJH8 293 aa3.29□□□□□ -1.88
BRCA1-202ENST00000354071 TMEM132AQ24JP5 1023 aa3.29□□□□□ -1.88
BRCA1-202ENST00000354071 POTEB3A0JP26 581 aa3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms