RNA–Protein interactions for RNA: ENST00000308330.2

LEMD3-201, Transcript of LEM domain containing 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LEMD3, Length 4,764 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LEMD3-201ENST00000308330 NPM2Q86SE8 214 aaKnown RBP20.73■□□□□ 0.91
LEMD3-201ENST00000308330 TSPY4P0CV99 314 aa20.73■□□□□ 0.91
LEMD3-201ENST00000308330 TSPY10P0CW01 314 aa20.73■□□□□ 0.91
LEMD3-201ENST00000308330 NCLP19338 710 aaKnown RBP20.73■□□□□ 0.91
LEMD3-201ENST00000308330 CDK11BP21127 795 aaKnown RBP20.72■□□□□ 0.91
LEMD3-201ENST00000308330 RBM19Q9Y4C8 960 aaKnown RBP20.71■□□□□ 0.91
LEMD3-201ENST00000308330 MTUS2Q5JR59 1369 aa20.7■□□□□ 0.9
LEMD3-201ENST00000308330 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.69■□□□□ 0.9
LEMD3-201ENST00000308330 PLEKHD1A6NEE1 506 aa20.69■□□□□ 0.9
LEMD3-201ENST00000308330 KIF27Q86VH2 1401 aa20.68■□□□□ 0.9
LEMD3-201ENST00000308330 SALL2Q9Y467 1007 aaPredicted RBP20.66■□□□□ 0.9
LEMD3-201ENST00000308330 MIER1Q8N108 512 aa20.63■□□□□ 0.89
LEMD3-201ENST00000308330 CLIP1P30622 1438 aa20.61■□□□□ 0.89
LEMD3-201ENST00000308330 NOP58Q9Y2X3 529 aaKnown RBP20.6■□□□□ 0.89
LEMD3-201ENST00000308330 MROH2BQ7Z745 1585 aa20.59■□□□□ 0.89
LEMD3-201ENST00000308330 HSP90AA1P07900 732 aaKnown RBP20.58■□□□□ 0.88
LEMD3-201ENST00000308330 RSPH6AQ9H0K4 717 aa20.58■□□□□ 0.88
LEMD3-201ENST00000308330 PDS5BQ9NTI5 1447 aa20.57■□□□□ 0.88
LEMD3-201ENST00000308330 EEA1Q15075 1411 aa20.56■□□□□ 0.88
LEMD3-201ENST00000308330 SMARCA2P51531 1590 aa20.51■□□□□ 0.87
LEMD3-201ENST00000308330 MYO15BQ96JP2 1530 aa20.5■□□□□ 0.87
LEMD3-201ENST00000308330 ANP32BQ92688 251 aaKnown RBP20.5■□□□□ 0.87
LEMD3-201ENST00000308330 TRHP20396 242 aaPredicted RBP20.5■□□□□ 0.87
LEMD3-201ENST00000308330 HSP90AA2PQ14568 343 aaPredicted RBP20.49■□□□□ 0.87
LEMD3-201ENST00000308330 PDE4CQ08493 712 aa20.48■□□□□ 0.87
LEMD3-201ENST00000308330 CUX2O14529 1486 aa20.47■□□□□ 0.87
LEMD3-201ENST00000308330 AMER1Q5JTC6 1135 aaPredicted RBP20.45■□□□□ 0.86
LEMD3-201ENST00000308330 TDRD9Q8NDG6 1382 aaKnown RBP20.45■□□□□ 0.86
LEMD3-201ENST00000308330 CCDC88BA6NC98 1476 aa20.45■□□□□ 0.86
LEMD3-201ENST00000308330 PPM1GO15355 546 aaPredicted RBP20.45■□□□□ 0.86
LEMD3-201ENST00000308330 TRIM44Q96DX7 344 aaPredicted RBP20.45■□□□□ 0.86
LEMD3-201ENST00000308330 TIMELESSQ9UNS1 1208 aa20.45■□□□□ 0.86
LEMD3-201ENST00000308330 GOLGA3Q08378 1498 aa20.45■□□□□ 0.86
LEMD3-201ENST00000308330 ARID4BQ4LE39 1312 aaPredicted RBP20.44■□□□□ 0.86
LEMD3-201ENST00000308330 CFDP1Q9UEE9 299 aaPredicted RBP20.43■□□□□ 0.86
LEMD3-201ENST00000308330 CARMIL1Q5VZK9 1371 aa20.43■□□□□ 0.86
LEMD3-201ENST00000308330 PLEKHG5O94827 1062 aa20.43■□□□□ 0.86
LEMD3-201ENST00000308330 ANP32CO43423 234 aa20.42■□□□□ 0.86
LEMD3-201ENST00000308330 RRP7BPQ9NSQ0 103 aa20.42■□□□□ 0.86
LEMD3-201ENST00000308330 CADPSQ9ULU8 1353 aa20.41■□□□□ 0.86
LEMD3-201ENST00000308330 ARXQ96QS3 562 aa20.39■□□□□ 0.86
LEMD3-201ENST00000308330 TONSLQ96HA7 1378 aa20.38■□□□□ 0.85
LEMD3-201ENST00000308330 SOGA1O94964 1423 aa20.36■□□□□ 0.85
LEMD3-201ENST00000308330 SENP3Q9H4L4 574 aaPredicted RBP20.35■□□□□ 0.85
LEMD3-201ENST00000308330 CEP162Q5TB80 1403 aa20.35■□□□□ 0.85
LEMD3-201ENST00000308330 KDM2AQ9Y2K7 1162 aa20.34■□□□□ 0.85
LEMD3-201ENST00000308330 ATAD2BQ9ULI0 1458 aa20.34■□□□□ 0.85
LEMD3-201ENST00000308330 CEP164Q9UPV0 1460 aa20.33■□□□□ 0.85
LEMD3-201ENST00000308330 LAS1LQ9Y4W2 734 aaKnown RBP20.28■□□□□ 0.84
LEMD3-201ENST00000308330 TNIKQ9UKE5 1360 aa20.27■□□□□ 0.84
LEMD3-201ENST00000308330 EIF4G1Q04637 1599 aaKnown RBP20.27■□□□□ 0.83
LEMD3-201ENST00000308330 PNNQ9H307 717 aaKnown RBP20.26■□□□□ 0.83
LEMD3-201ENST00000308330 PPP1R15AO75807 674 aaPredicted RBP20.25■□□□□ 0.83
LEMD3-201ENST00000308330 RGL3Q3MIN7 710 aa20.19■□□□□ 0.82
LEMD3-201ENST00000308330 DDRGK1Q96HY6 314 aa20.19■□□□□ 0.82
LEMD3-201ENST00000308330 WIZO95785 1651 aa20.18■□□□□ 0.82
LEMD3-201ENST00000308330 IRX6P78412 446 aaPredicted RBP20.17■□□□□ 0.82
LEMD3-201ENST00000308330 ABCC8Q09428 1581 aa20.16■□□□□ 0.82
LEMD3-201ENST00000308330 MLECQ14165 292 aa20.14■□□□□ 0.82
LEMD3-201ENST00000308330 C14orf37Q86TY3 774 aa20.14■□□□□ 0.82
LEMD3-201ENST00000308330 CARMIL2Q6F5E8 1435 aa20.14■□□□□ 0.82
LEMD3-201ENST00000308330 TOP2AP11388 1531 aaKnown RBP20.13■□□□□ 0.81
LEMD3-201ENST00000308330 PDIA4P13667 645 aaKnown RBP20.12■□□□□ 0.81
LEMD3-201ENST00000308330 CCNB3Q8WWL7 1395 aa20.11■□□□□ 0.81
LEMD3-201ENST00000308330 FHAD1B1AJZ9 1412 aa20.1■□□□□ 0.81
LEMD3-201ENST00000308330 IL27Q8NEV9 243 aa20.1■□□□□ 0.81
LEMD3-201ENST00000308330 JPH4Q96JJ6 628 aa20.09■□□□□ 0.81
LEMD3-201ENST00000308330 HNRNPUQ00839 825 aaKnown RBP eCLIP20.09■□□□□ 0.81
LEMD3-201ENST00000308330 SMARCA4P51532 1647 aa20.07■□□□□ 0.8
LEMD3-201ENST00000308330 FANCIQ9NVI1 1328 aa20.07■□□□□ 0.8
LEMD3-201ENST00000308330 ZMYND15Q9H091 742 aa20.07■□□□□ 0.8
LEMD3-201ENST00000308330 FANCD2Q9BXW9 1451 aa20.06■□□□□ 0.8
LEMD3-201ENST00000308330 CANXP27824 592 aaKnown RBP20.05■□□□□ 0.8
LEMD3-201ENST00000308330 DDX10Q13206 875 aaKnown RBP20.04■□□□□ 0.8
LEMD3-201ENST00000308330 L1TD1Q5T7N2 865 aaKnown RBP20.04■□□□□ 0.8
LEMD3-201ENST00000308330 CYB5RLQ6IPT4 315 aa20.04■□□□□ 0.8
LEMD3-201ENST00000308330 OSCARQ8IYS5 282 aa20.03■□□□□ 0.8
LEMD3-201ENST00000308330 PTMSP20962 102 aa20.01■□□□□ 0.79
LEMD3-201ENST00000308330 GGT6Q6P531 493 aa19.99■□□□□ 0.79
LEMD3-201ENST00000308330 HIRIP3Q9BW71 556 aaPredicted RBP19.98■□□□□ 0.79
LEMD3-201ENST00000308330 PPP4R2Q9NY27 417 aa19.97■□□□□ 0.79
LEMD3-201ENST00000308330 USP35Q9P2H5 1018 aa19.97■□□□□ 0.79
LEMD3-201ENST00000308330 EFCAB2Q5VUJ9 269 aa19.96■□□□□ 0.79
LEMD3-201ENST00000308330 TMC1Q8TDI8 760 aa19.94■□□□□ 0.78
LEMD3-201ENST00000308330 NCAPD3P42695 1498 aa19.93■□□□□ 0.78
LEMD3-201ENST00000308330 APPP05067 770 aa19.92■□□□□ 0.78
LEMD3-201ENST00000308330 ZBTB7CA1YPR0 619 aa19.91■□□□□ 0.78
LEMD3-201ENST00000308330 EIF4G2P78344 907 aaKnown RBP eCLIP19.91■□□□□ 0.782e-7■■■■■ 37.6
LEMD3-201ENST00000308330 DNTTIP2Q5QJE6 756 aaKnown RBP19.91■□□□□ 0.78
LEMD3-201ENST00000308330 TNNT3P45378 269 aaPredicted RBP19.9■□□□□ 0.78
LEMD3-201ENST00000308330 ARID3AQ99856 593 aa19.9■□□□□ 0.78
LEMD3-201ENST00000308330 A0A0G2JS52 829 aa19.89■□□□□ 0.78
LEMD3-201ENST00000308330 IPO9Q96P70 1041 aaKnown RBP19.88■□□□□ 0.77
LEMD3-201ENST00000308330 FAM9BQ8IZU0 186 aa19.87■□□□□ 0.77
LEMD3-201ENST00000308330 KANK4Q5T7N3 995 aaPredicted RBP19.86■□□□□ 0.77
LEMD3-201ENST00000308330 RAPGEF2Q9Y4G8 1499 aa19.85■□□□□ 0.77
LEMD3-201ENST00000308330 FMN1Q68DA7 1419 aa19.85■□□□□ 0.77
LEMD3-201ENST00000308330 HAP1P54257 671 aaPredicted RBP19.85■□□□□ 0.77
LEMD3-201ENST00000308330 UPF2Q9HAU5 1272 aaKnown RBP19.85■□□□□ 0.77
LEMD3-201ENST00000308330 TAF7LQ5H9L4 462 aa19.84■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms