RNA–Protein interactions for RNA: ENST00000296051.6

HPS3-201, Transcript of HPS3, biogenesis of lysosomal organelles complex 2 subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HPS3, Length 4,665 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3-201ENST00000296051 SIN3AQ96ST3 1273 aa18.3■□□□□ 0.52
HPS3-201ENST00000296051 EIF5BO60841 1220 aaKnown RBP18.29■□□□□ 0.52
HPS3-201ENST00000296051 MTUS2Q5JR59 1369 aa18.27■□□□□ 0.52
HPS3-201ENST00000296051 TSHZ2Q9NRE2 1034 aa18.27■□□□□ 0.51
HPS3-201ENST00000296051 BAZ1BQ9UIG0 1483 aaKnown RBP18.25■□□□□ 0.51
HPS3-201ENST00000296051 TNIKQ9UKE5 1360 aa18.25■□□□□ 0.51
HPS3-201ENST00000296051 SOGA1O94964 1423 aa18.24■□□□□ 0.51
HPS3-201ENST00000296051 MRS2Q9HD23 443 aa18.24■□□□□ 0.51
HPS3-201ENST00000296051 CCDC136Q96JN2 1154 aa18.23■□□□□ 0.51
HPS3-201ENST00000296051 KDM2AQ9Y2K7 1162 aa18.22■□□□□ 0.51
HPS3-201ENST00000296051 C14orf37Q86TY3 774 aa18.21■□□□□ 0.51
HPS3-201ENST00000296051 A0A0G2JS52 829 aa18.21■□□□□ 0.51
HPS3-201ENST00000296051 RBM19Q9Y4C8 960 aaKnown RBP18.21■□□□□ 0.51
HPS3-201ENST00000296051 NACADO15069 1562 aa18.19■□□□□ 0.5
HPS3-201ENST00000296051 ZBTB47Q9UFB7 747 aaPredicted RBP18.19■□□□□ 0.5
HPS3-201ENST00000296051 PPP1R15AO75807 674 aaPredicted RBP18.18■□□□□ 0.5
HPS3-201ENST00000296051 GOLGA3Q08378 1498 aa18.17■□□□□ 0.5
HPS3-201ENST00000296051 CANXP27824 592 aaKnown RBP18.14■□□□□ 0.49
HPS3-201ENST00000296051 RRP7BPQ9NSQ0 103 aa18.13■□□□□ 0.49
HPS3-201ENST00000296051 B4GALNT3Q6L9W6 998 aa18.11■□□□□ 0.49
HPS3-201ENST00000296051 RTN4Q9NQC3 1192 aaKnown RBP18.1■□□□□ 0.49
HPS3-201ENST00000296051 ZBTB7CA1YPR0 619 aa18.08■□□□□ 0.48
HPS3-201ENST00000296051 CFDP1Q9UEE9 299 aaPredicted RBP18.07■□□□□ 0.48
HPS3-201ENST00000296051 MLECQ14165 292 aa18.07■□□□□ 0.48
HPS3-201ENST00000296051 KANK4Q5T7N3 995 aaPredicted RBP18.07■□□□□ 0.48
HPS3-201ENST00000296051 TMC1Q8TDI8 760 aa18.06■□□□□ 0.48
HPS3-201ENST00000296051 RGL3Q3MIN7 710 aa18.06■□□□□ 0.48
HPS3-201ENST00000296051 WRNQ14191 1432 aaPredicted RBP eCLIP18.05■□□□□ 0.48
HPS3-201ENST00000296051 CCDC88BA6NC98 1476 aa18.05■□□□□ 0.48
HPS3-201ENST00000296051 ARXQ96QS3 562 aa18.04■□□□□ 0.48
HPS3-201ENST00000296051 EEA1Q15075 1411 aa18.02■□□□□ 0.48
HPS3-201ENST00000296051 ABCC8Q09428 1581 aa18.02■□□□□ 0.48
HPS3-201ENST00000296051 MROH2BQ7Z745 1585 aa18.02■□□□□ 0.48
HPS3-201ENST00000296051 EIF4G2P78344 907 aaKnown RBP eCLIP18.01■□□□□ 0.47
HPS3-201ENST00000296051 HAP1P54257 671 aaPredicted RBP17.99■□□□□ 0.47
HPS3-201ENST00000296051 KIF27Q86VH2 1401 aa17.97■□□□□ 0.47
HPS3-201ENST00000296051 LAS1LQ9Y4W2 734 aaKnown RBP17.95■□□□□ 0.46
HPS3-201ENST00000296051 CEP164Q9UPV0 1460 aa17.95■□□□□ 0.46
HPS3-201ENST00000296051 DEKP35659 375 aaKnown RBP17.94■□□□□ 0.46
HPS3-201ENST00000296051 PPP4R2Q9NY27 417 aa17.93■□□□□ 0.46
HPS3-201ENST00000296051 LMOD2Q6P5Q4 547 aa17.93■□□□□ 0.46
HPS3-201ENST00000296051 BAZ1AQ9NRL2 1556 aaPredicted RBP17.91■□□□□ 0.46
HPS3-201ENST00000296051 CCNB3Q8WWL7 1395 aa17.9■□□□□ 0.46
HPS3-201ENST00000296051 NOP58Q9Y2X3 529 aaKnown RBP17.89■□□□□ 0.45
HPS3-201ENST00000296051 TDRD9Q8NDG6 1382 aaKnown RBP17.87■□□□□ 0.45
HPS3-201ENST00000296051 VPS8Q8N3P4 1428 aa17.86■□□□□ 0.45
HPS3-201ENST00000296051 RUSC2Q8N2Y8 1516 aa17.84■□□□□ 0.45
HPS3-201ENST00000296051 PDS5BQ9NTI5 1447 aa17.82■□□□□ 0.44
HPS3-201ENST00000296051 GGT6Q6P531 493 aa17.81■□□□□ 0.44
HPS3-201ENST00000296051 CUX2O14529 1486 aa17.81■□□□□ 0.44
HPS3-201ENST00000296051 CARMIL1Q5VZK9 1371 aa17.8■□□□□ 0.44
HPS3-201ENST00000296051 CCER2I3L3R5 266 aa17.79■□□□□ 0.44
HPS3-201ENST00000296051 RAB3GAP2Q9H2M9 1393 aa17.79■□□□□ 0.44
HPS3-201ENST00000296051 DHX57Q6P158 1386 aaKnown RBP17.78■□□□□ 0.44
HPS3-201ENST00000296051 PPM1GO15355 546 aaPredicted RBP17.77■□□□□ 0.44
HPS3-201ENST00000296051 CYB5RLQ6IPT4 315 aa17.77■□□□□ 0.43
HPS3-201ENST00000296051 WIZO95785 1651 aa17.76■□□□□ 0.43
HPS3-201ENST00000296051 EIF4G1Q04637 1599 aaKnown RBP17.76■□□□□ 0.43
HPS3-201ENST00000296051 POGKQ9P215 609 aa17.75■□□□□ 0.43
HPS3-201ENST00000296051 WDR43Q15061 677 aaKnown RBP eCLIP17.74■□□□□ 0.43
HPS3-201ENST00000296051 FOXD1Q16676 465 aa17.74■□□□□ 0.43
HPS3-201ENST00000296051 HSPA5P11021 654 aaKnown RBP17.73■□□□□ 0.43
HPS3-201ENST00000296051 SETD5Q9C0A6 1442 aa17.69■□□□□ 0.42
HPS3-201ENST00000296051 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.67■□□□□ 0.42
HPS3-201ENST00000296051 RGS3P49796 1198 aa17.67■□□□□ 0.42
HPS3-201ENST00000296051 UPF2Q9HAU5 1272 aaKnown RBP17.64■□□□□ 0.41
HPS3-201ENST00000296051 HSP90AA1P07900 732 aaKnown RBP17.64■□□□□ 0.41
HPS3-201ENST00000296051 SAFB2Q14151 953 aaKnown RBP eCLIP17.63■□□□□ 0.41
HPS3-201ENST00000296051 SOX12O15370 315 aa17.63■□□□□ 0.41
HPS3-201ENST00000296051 RAPGEF2Q9Y4G8 1499 aa17.62■□□□□ 0.41
HPS3-201ENST00000296051 CARD11Q9BXL7 1154 aa17.61■□□□□ 0.41
HPS3-201ENST00000296051 CARMIL2Q6F5E8 1435 aa17.61■□□□□ 0.41
HPS3-201ENST00000296051 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.6■□□□□ 0.41
HPS3-201ENST00000296051 CADPSQ9ULU8 1353 aa17.6■□□□□ 0.41
HPS3-201ENST00000296051 TIMELESSQ9UNS1 1208 aa17.6■□□□□ 0.41
HPS3-201ENST00000296051 EFCAB2Q5VUJ9 269 aa17.59■□□□□ 0.41
HPS3-201ENST00000296051 OSCARQ8IYS5 282 aa17.59■□□□□ 0.41
HPS3-201ENST00000296051 JPH4Q96JJ6 628 aa17.59■□□□□ 0.41
HPS3-201ENST00000296051 HDGFP51858 240 aaKnown RBP17.58■□□□□ 0.4
HPS3-201ENST00000296051 TNNT2P45379 298 aaPredicted RBP17.57■□□□□ 0.4
HPS3-201ENST00000296051 DDRGK1Q96HY6 314 aa17.57■□□□□ 0.4
HPS3-201ENST00000296051 CC2D1BQ5T0F9 858 aaKnown RBP17.55■□□□□ 0.4
HPS3-201ENST00000296051 STK26Q9P289 416 aa17.54■□□□□ 0.4
HPS3-201ENST00000296051 KNSTRNQ9Y448 316 aa17.54■□□□□ 0.4
HPS3-201ENST00000296051 SMARCA2P51531 1590 aa17.53■□□□□ 0.4
HPS3-201ENST00000296051 DCAF11Q8TEB1 546 aa17.53■□□□□ 0.4
HPS3-201ENST00000296051 KANK1Q14678 1352 aa17.52■□□□□ 0.4
HPS3-201ENST00000296051 CDCA8Q53HL2 280 aa17.52■□□□□ 0.4
HPS3-201ENST00000296051 NEUROD2Q15784 382 aa17.52■□□□□ 0.39
HPS3-201ENST00000296051 KIF3BO15066 747 aa17.5■□□□□ 0.39
HPS3-201ENST00000296051 CFAP53Q96M91 514 aa17.5■□□□□ 0.39
HPS3-201ENST00000296051 IPO9Q96P70 1041 aaKnown RBP17.5■□□□□ 0.39
HPS3-201ENST00000296051 FHAD1B1AJZ9 1412 aa17.49■□□□□ 0.39
HPS3-201ENST00000296051 L3MBTL2Q969R5 705 aa17.49■□□□□ 0.39
HPS3-201ENST00000296051 SRPK2P78362 688 aaKnown RBP17.48■□□□□ 0.39
HPS3-201ENST00000296051 NPHP1O15259 732 aa17.48■□□□□ 0.39
HPS3-201ENST00000296051 GLIPR1L2Q4G1C9 344 aa17.48■□□□□ 0.39
HPS3-201ENST00000296051 ANP32BQ92688 251 aaKnown RBP17.47■□□□□ 0.39
HPS3-201ENST00000296051 ATAD2BQ9ULI0 1458 aa17.47■□□□□ 0.39
HPS3-201ENST00000296051 ERICH6BQ5W0A0 696 aa17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 89 ms