RNA–Protein interactions for RNA: ENST00000292535.11

CUX1-201, Transcript of cut like homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CUX1, Length 13,747 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-201ENST00000292535 HAP1P54257 671 aaPredicted RBP12.23□□□□□ -0.45
CUX1-201ENST00000292535 NPHP1O15259 732 aa12.22□□□□□ -0.45
CUX1-201ENST00000292535 SALL2Q9Y467 1007 aaPredicted RBP12.22□□□□□ -0.45
CUX1-201ENST00000292535 PTMAP06454 111 aaKnown RBP12.22□□□□□ -0.45
CUX1-201ENST00000292535 GOLGA6L6A8MZA4 724 aa12.21□□□□□ -0.45
CUX1-201ENST00000292535 PPP1R15AO75807 674 aaPredicted RBP12.21□□□□□ -0.45
CUX1-201ENST00000292535 NRDCO43847 1150 aa12.2□□□□□ -0.46
CUX1-201ENST00000292535 DDX10Q13206 875 aaKnown RBP12.2□□□□□ -0.46
CUX1-201ENST00000292535 CHMP4BQ9H444 224 aaKnown RBP12.18□□□□□ -0.46
CUX1-201ENST00000292535 CFAP53Q96M91 514 aa12.18□□□□□ -0.46
CUX1-201ENST00000292535 ZBTB7CA1YPR0 619 aa12.17□□□□□ -0.46
CUX1-201ENST00000292535 CHMP7Q8WUX9 453 aaPredicted RBP12.16□□□□□ -0.46
CUX1-201ENST00000292535 MTUS2Q5JR59 1369 aa12.15□□□□□ -0.46
CUX1-201ENST00000292535 CHIC2Q9UKJ5 165 aa12.15□□□□□ -0.46
CUX1-201ENST00000292535 KDM2AQ9Y2K7 1162 aa12.15□□□□□ -0.47
CUX1-201ENST00000292535 FTSJ3Q8IY81 847 aaKnown RBP12.14□□□□□ -0.47
CUX1-201ENST00000292535 TULP1O00294 542 aaPredicted RBP12.12□□□□□ -0.47
CUX1-201ENST00000292535 DNTTIP2Q5QJE6 756 aaKnown RBP12.12□□□□□ -0.47
CUX1-201ENST00000292535 ARID4BQ4LE39 1312 aaPredicted RBP12.1□□□□□ -0.47
CUX1-201ENST00000292535 GOLGA2Q08379 1002 aa12.1□□□□□ -0.47
CUX1-201ENST00000292535 EIF4G2P78344 907 aaKnown RBP eCLIP12.09□□□□□ -0.471e-6■■■■■ 34
CUX1-201ENST00000292535 KNSTRNQ9Y448 316 aa12.08□□□□□ -0.47
CUX1-201ENST00000292535 NUDCQ9Y266 331 aa12.08□□□□□ -0.48
CUX1-201ENST00000292535 SCRIBQ14160 1630 aa12.08□□□□□ -0.48
CUX1-201ENST00000292535 CHAF1AQ13111 956 aaPredicted RBP12.08□□□□□ -0.48
CUX1-201ENST00000292535 RSF1Q96T23 1441 aaPredicted RBP12.08□□□□□ -0.48
CUX1-201ENST00000292535 FGD1P98174 961 aa12.07□□□□□ -0.48
CUX1-201ENST00000292535 L1TD1Q5T7N2 865 aaKnown RBP12.07□□□□□ -0.48
CUX1-201ENST00000292535 MS4A1P11836 297 aa12.06□□□□□ -0.48
CUX1-201ENST00000292535 PNNQ9H307 717 aaKnown RBP12.06□□□□□ -0.48
CUX1-201ENST00000292535 PPM1GO15355 546 aaPredicted RBP12.05□□□□□ -0.48
CUX1-201ENST00000292535 PLEKHG5O94827 1062 aa12.05□□□□□ -0.48
CUX1-201ENST00000292535 KAT6BQ8WYB5 2073 aa12.05□□□□□ -0.48
CUX1-201ENST00000292535 MAPK8IP3Q9UPT6 1336 aa12.05□□□□□ -0.48
CUX1-201ENST00000292535 DCAF1Q9Y4B6 1507 aa12.04□□□□□ -0.48
CUX1-201ENST00000292535 OS9Q13438 667 aaPredicted RBP12.04□□□□□ -0.48
CUX1-201ENST00000292535 PLEKHD1A6NEE1 506 aa12.02□□□□□ -0.48
CUX1-201ENST00000292535 ERICH6BQ5W0A0 696 aa12.01□□□□□ -0.49
CUX1-201ENST00000292535 KCNJ4P48050 445 aa12□□□□□ -0.49
CUX1-201ENST00000292535 MCCP23508 829 aa11.99□□□□□ -0.49
CUX1-201ENST00000292535 CFAP44Q96MT7 982 aa11.99□□□□□ -0.49
CUX1-201ENST00000292535 RRP7BPQ9NSQ0 103 aa11.98□□□□□ -0.49
CUX1-201ENST00000292535 KIAA2012Q0VF49 1180 aa11.97□□□□□ -0.49
CUX1-201ENST00000292535 CLSTN1O94985 981 aa11.97□□□□□ -0.49
CUX1-201ENST00000292535 NAP1L5Q96NT1 182 aaPredicted RBP11.97□□□□□ -0.49
CUX1-201ENST00000292535 TPRNQ4KMQ1 711 aa11.97□□□□□ -0.49
CUX1-201ENST00000292535 GOLGA6L4A6NEF3 574 aa11.96□□□□□ -0.49
CUX1-201ENST00000292535 LMOD2Q6P5Q4 547 aa11.95□□□□□ -0.5
CUX1-201ENST00000292535 KCNH8Q96L42 1107 aa11.95□□□□□ -0.5
CUX1-201ENST00000292535 POGKQ9P215 609 aa11.95□□□□□ -0.5
CUX1-201ENST00000292535 CLIP1P30622 1438 aa11.95□□□□□ -0.5
CUX1-201ENST00000292535 HDGFP51858 240 aaKnown RBP11.95□□□□□ -0.5
CUX1-201ENST00000292535 NAP1L2Q9ULW6 460 aaPredicted RBP11.94□□□□□ -0.5
CUX1-201ENST00000292535 HSP90AB1P08238 724 aaKnown RBP11.94□□□□□ -0.5
CUX1-201ENST00000292535 PLCB2Q00722 1185 aa11.94□□□□□ -0.5
CUX1-201ENST00000292535 SENP3Q9H4L4 574 aaPredicted RBP11.94□□□□□ -0.5
CUX1-201ENST00000292535 HSCBQ8IWL3 235 aa11.94□□□□□ -0.5
CUX1-201ENST00000292535 NCBP3Q53F19 620 aaKnown RBP11.93□□□□□ -0.5
CUX1-201ENST00000292535 RGL3Q3MIN7 710 aa11.93□□□□□ -0.5
CUX1-201ENST00000292535 IRX6P78412 446 aaPredicted RBP11.93□□□□□ -0.5
CUX1-201ENST00000292535 CARD11Q9BXL7 1154 aa11.92□□□□□ -0.5
CUX1-201ENST00000292535 KANK1Q14678 1352 aa11.91□□□□□ -0.5
CUX1-201ENST00000292535 LAS1LQ9Y4W2 734 aaKnown RBP11.91□□□□□ -0.5
CUX1-201ENST00000292535 MSNP26038 577 aaKnown RBP11.9□□□□□ -0.5
CUX1-201ENST00000292535 TMX4Q9H1E5 349 aaPredicted RBP11.9□□□□□ -0.5
CUX1-201ENST00000292535 KIAA1211Q6ZU35 1233 aa11.9□□□□□ -0.51
CUX1-201ENST00000292535 EEA1Q15075 1411 aa11.89□□□□□ -0.51
CUX1-201ENST00000292535 GNL2Q13823 731 aaKnown RBP11.89□□□□□ -0.51
CUX1-201ENST00000292535 TAOK2Q9UL54 1235 aa11.88□□□□□ -0.51
CUX1-201ENST00000292535 ISY1Q9ULR0 285 aaKnown RBP11.88□□□□□ -0.51
CUX1-201ENST00000292535 NOC3LQ8WTT2 800 aaKnown RBP11.88□□□□□ -0.51
CUX1-201ENST00000292535 CFDP1Q9UEE9 299 aaPredicted RBP11.88□□□□□ -0.51
CUX1-201ENST00000292535 FRAT1Q92837 279 aaPredicted RBP11.87□□□□□ -0.51
CUX1-201ENST00000292535 CCDC34Q96HJ3 373 aa11.86□□□□□ -0.51
CUX1-201ENST00000292535 GOLGA3Q08378 1498 aa11.86□□□□□ -0.51
CUX1-201ENST00000292535 HIRIP3Q9BW71 556 aaPredicted RBP11.86□□□□□ -0.51
CUX1-201ENST00000292535 ZCCHC6Q5VYS8 1495 aaKnown RBP11.85□□□□□ -0.51
CUX1-201ENST00000292535 CHMP4AQ9BY43 222 aa11.85□□□□□ -0.51
CUX1-201ENST00000292535 GPATCH3Q96I76 525 aa11.85□□□□□ -0.51
CUX1-201ENST00000292535 MIER1Q8N108 512 aa11.85□□□□□ -0.51
CUX1-201ENST00000292535 USP35Q9P2H5 1018 aa11.84□□□□□ -0.51
CUX1-201ENST00000292535 DRC7Q8IY82 874 aa11.84□□□□□ -0.51
CUX1-201ENST00000292535 TMF1P82094 1093 aa11.84□□□□□ -0.51
CUX1-201ENST00000292535 PTMSP20962 102 aa11.84□□□□□ -0.51
CUX1-201ENST00000292535 RTF1Q92541 710 aaKnown RBP11.84□□□□□ -0.51
CUX1-201ENST00000292535 HTATSF1O43719 755 aaKnown RBP11.83□□□□□ -0.52
CUX1-201ENST00000292535 NEUROD2Q15784 382 aa11.83□□□□□ -0.52
CUX1-201ENST00000292535 PPP4R2Q9NY27 417 aa11.83□□□□□ -0.52
CUX1-201ENST00000292535 AMER1Q5JTC6 1135 aaPredicted RBP11.82□□□□□ -0.52
CUX1-201ENST00000292535 PRM3Q9NNZ6 103 aa11.82□□□□□ -0.52
CUX1-201ENST00000292535 RGS3P49796 1198 aa11.82□□□□□ -0.52
CUX1-201ENST00000292535 IPO8O15397 1037 aaKnown RBP11.82□□□□□ -0.52
CUX1-201ENST00000292535 CALD1Q05682 793 aaKnown RBP11.82□□□□□ -0.52
CUX1-201ENST00000292535 TPM4P67936 248 aa11.82□□□□□ -0.52
CUX1-201ENST00000292535 NOP58Q9Y2X3 529 aaKnown RBP11.82□□□□□ -0.52
CUX1-201ENST00000292535 CCDC180Q9P1Z9 1646 aa11.81□□□□□ -0.52
CUX1-201ENST00000292535 U2SURPO15042 1029 aaKnown RBP11.81□□□□□ -0.52
CUX1-201ENST00000292535 KIF27Q86VH2 1401 aa11.8□□□□□ -0.52
CUX1-201ENST00000292535 GBP4Q96PP9 640 aa11.79□□□□□ -0.52
CUX1-201ENST00000292535 RB1CC1Q8TDY2 1594 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms